RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 PTK7Q13308 1070 aa8.64□□□□□ -1.03
SCFD1-209ENST00000553280 CRTC2Q53ET0 693 aaPredicted RBP8.64□□□□□ -1.03
SCFD1-209ENST00000553280 RNF20Q5VTR2 975 aa8.64□□□□□ -1.03
SCFD1-209ENST00000553280 CDCA7Q9BWT1 371 aaPredicted RBP8.64□□□□□ -1.03
SCFD1-209ENST00000553280 PCDHB11Q9Y5F2 797 aa8.64□□□□□ -1.03
SCFD1-209ENST00000553280 USP17L15C9J2P7 530 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 USP17L10C9JJH3 530 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 USP17L13C9JLJ4 530 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 USP17L12C9JPN9 530 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 USP17L11C9JVI0 530 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 USP17L21D6R901 530 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 USP17L18D6R9N7 530 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 USP17L22D6RA61 530 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 USP17L17D6RBQ6 530 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 USP17L19D6RCP7 530 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 USP17L20D6RJB6 530 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 SCTRP47872 440 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 USP17L24Q0WX57 530 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 CC2D2BQ6DHV5 1058 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 RNF217Q8TC41 542 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 FAM200AQ8TCP9 573 aa8.63□□□□□ -1.03
SCFD1-209ENST00000553280 FAM69CQ0P6D2 419 aa8.62□□□□□ -1.03
SCFD1-209ENST00000553280 CCDC27Q2M243 656 aa8.62□□□□□ -1.03
SCFD1-209ENST00000553280 FOXD4L5Q5VV16 416 aaPredicted RBP8.62□□□□□ -1.03
SCFD1-209ENST00000553280 PHLDB3Q6NSJ2 640 aa8.62□□□□□ -1.03
SCFD1-209ENST00000553280 SSFA2P28290 1259 aa8.61□□□□□ -1.03
SCFD1-209ENST00000553280 ERVK-9P63128 1117 aa8.61□□□□□ -1.03
SCFD1-209ENST00000553280 EML3Q32P44 896 aa8.61□□□□□ -1.03
SCFD1-209ENST00000553280 TXNDC2Q86VQ3 553 aa8.61□□□□□ -1.03
SCFD1-209ENST00000553280 ANKMY2Q8IV38 441 aa8.61□□□□□ -1.03
SCFD1-209ENST00000553280 CCER1Q8TC90 406 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-209ENST00000553280 FOXD4L4Q8WXT5 416 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-209ENST00000553280 MEN1O00255 615 aa8.6□□□□□ -1.03
SCFD1-209ENST00000553280 TSGA10IPQ3SY00 556 aa8.6□□□□□ -1.03
SCFD1-209ENST00000553280 CCDC155Q8N6L0 562 aa8.6□□□□□ -1.03
SCFD1-209ENST00000553280 CLP1Q92989 425 aaKnown RBP8.6□□□□□ -1.03
SCFD1-209ENST00000553280 TRIM52Q96A61 297 aa8.6□□□□□ -1.03
SCFD1-209ENST00000553280 ARID4AP29374 1257 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-209ENST00000553280 TRIM50Q86XT4 487 aa8.59□□□□□ -1.03
SCFD1-209ENST00000553280 CCDC125Q86Z20 511 aa8.59□□□□□ -1.03
SCFD1-209ENST00000553280 OGFOD1Q8N543 542 aa8.59□□□□□ -1.03
SCFD1-209ENST00000553280 CCDC85AQ96PX6 553 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-209ENST00000553280 ESF1Q9H501 851 aaKnown RBP8.59□□□□□ -1.03
SCFD1-209ENST00000553280 A0A1W2PRU2 124 aa8.58□□□□□ -1.04
SCFD1-209ENST00000553280 SLC35F4A4IF30 521 aa8.58□□□□□ -1.04
SCFD1-209ENST00000553280 VSIG8P0DPA2 414 aa8.58□□□□□ -1.04
SCFD1-209ENST00000553280 ATP1A2P50993 1020 aa8.58□□□□□ -1.04
SCFD1-209ENST00000553280 CLDN10P78369 228 aa8.58□□□□□ -1.04
SCFD1-209ENST00000553280 PRICKLE2Q7Z3G6 844 aa8.58□□□□□ -1.04
SCFD1-209ENST00000553280 OSBPL3Q9H4L5 887 aa8.58□□□□□ -1.04
SCFD1-209ENST00000553280 SLAIN2Q9P270 581 aa8.58□□□□□ -1.04
SCFD1-209ENST00000553280 NOD1Q9Y239 953 aa8.58□□□□□ -1.04
SCFD1-209ENST00000553280 RHOQP17081 205 aa8.57□□□□□ -1.04
SCFD1-209ENST00000553280 DPYDQ12882 1025 aa8.57□□□□□ -1.04
SCFD1-209ENST00000553280 LYSMD3Q7Z3D4 306 aa8.57□□□□□ -1.04
SCFD1-209ENST00000553280 CYP2U1Q7Z449 544 aa8.57□□□□□ -1.04
SCFD1-209ENST00000553280 LARGE2Q8N3Y3 721 aa8.57□□□□□ -1.04
SCFD1-209ENST00000553280 DNAAF2Q9NVR5 837 aaKnown RBP8.57□□□□□ -1.04
SCFD1-209ENST00000553280 ZBTB7BO15156 539 aaPredicted RBP8.56□□□□□ -1.04
SCFD1-209ENST00000553280 SWI5Q1ZZU3 235 aa8.56□□□□□ -1.04
SCFD1-209ENST00000553280 GPR161Q8N6U8 529 aaKnown RBP8.56□□□□□ -1.04
SCFD1-209ENST00000553280 ARHGEF10LQ9HCE6 1279 aa8.56□□□□□ -1.04
SCFD1-209ENST00000553280 RAB6BQ9NRW1 208 aa8.56□□□□□ -1.04
SCFD1-209ENST00000553280 DOLKQ9UPQ8 538 aa8.56□□□□□ -1.04
SCFD1-209ENST00000553280 AMOTL2Q9Y2J4 779 aa8.56□□□□□ -1.04
SCFD1-209ENST00000553280 SENP3-EIF4A1A0A087X0R7 540 aa8.55□□□□□ -1.04
SCFD1-209ENST00000553280 CDC14CA4D256 554 aa8.55□□□□□ -1.04
SCFD1-209ENST00000553280 RNF144AP50876 292 aaPredicted RBP8.55□□□□□ -1.04
SCFD1-209ENST00000553280 ZSCAN1Q8NBB4 408 aa8.55□□□□□ -1.04
SCFD1-209ENST00000553280 NLRP3Q96P20 1036 aa8.55□□□□□ -1.04
SCFD1-209ENST00000553280 DKK1O94907 266 aa8.54□□□□□ -1.04
SCFD1-209ENST00000553280 ITGA6P23229 1130 aa8.54□□□□□ -1.04
SCFD1-209ENST00000553280 LORP23490 312 aaPredicted RBP8.54□□□□□ -1.04
SCFD1-209ENST00000553280 ATP2B4P23634 1241 aa8.54□□□□□ -1.04
SCFD1-209ENST00000553280 SIX5Q8N196 739 aa8.54□□□□□ -1.04
SCFD1-209ENST00000553280 STK17AQ9UEE5 414 aa8.54□□□□□ -1.04
SCFD1-209ENST00000553280 MYCP01106 439 aaPredicted RBP8.53□□□□□ -1.04
SCFD1-209ENST00000553280 RBM25P49756 843 aaKnown RBP8.53□□□□□ -1.04
SCFD1-209ENST00000553280 SLC27A3Q5K4L6 730 aa8.53□□□□□ -1.04
SCFD1-209ENST00000553280 VWA5B2Q8N398 1253 aa8.53□□□□□ -1.04
SCFD1-209ENST00000553280 ZNF428Q96B54 188 aa8.53□□□□□ -1.04
SCFD1-209ENST00000553280 ZNF594Q96JF6 807 aaPredicted RBP8.53□□□□□ -1.04
SCFD1-209ENST00000553280 CLN3Q13286 438 aa8.52□□□□□ -1.05
SCFD1-209ENST00000553280 OXLD1Q5BKU9 147 aa8.52□□□□□ -1.05
SCFD1-209ENST00000553280 C1orf216Q8TAB5 229 aa8.52□□□□□ -1.05
SCFD1-209ENST00000553280 CNTNAP3BQ96NU0 1288 aa8.52□□□□□ -1.05
SCFD1-209ENST00000553280 CNTNAP3Q9BZ76 1288 aa8.52□□□□□ -1.05
SCFD1-209ENST00000553280 GPC1P35052 558 aa8.51□□□□□ -1.05
SCFD1-209ENST00000553280 SEC13P55735 322 aa8.51□□□□□ -1.05
SCFD1-209ENST00000553280 GTF2IP78347 998 aa8.51□□□□□ -1.05
SCFD1-209ENST00000553280 KRT76Q01546 638 aa8.51□□□□□ -1.05
SCFD1-209ENST00000553280 POU4F2Q12837 409 aa8.51□□□□□ -1.05
SCFD1-209ENST00000553280 USP4Q13107 963 aa8.51□□□□□ -1.05
SCFD1-209ENST00000553280 NANOS1Q8WY41 292 aaKnown RBP8.51□□□□□ -1.05
SCFD1-209ENST00000553280 SIRT1Q96EB6 747 aa8.51□□□□□ -1.05
SCFD1-209ENST00000553280 COL25A1Q9BXS0 654 aaPredicted RBP8.51□□□□□ -1.05
SCFD1-209ENST00000553280 KIAA1024Q9UPX6 916 aa8.51□□□□□ -1.05
SCFD1-209ENST00000553280 PCDHGA11Q9Y5H2 935 aa8.51□□□□□ -1.05
SCFD1-209ENST00000553280 STAU1O95793 577 aaKnown RBP8.5□□□□□ -1.05
SCFD1-209ENST00000553280 CCDC102BQ68D86 513 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms