RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 SMPD1P17405 629 aa8.67□□□□□ -1.02
LIMA1-205ENST00000550592 EPHA4P54764 986 aa8.67□□□□□ -1.02
LIMA1-205ENST00000550592 TNS4Q8IZW8 715 aa8.67□□□□□ -1.02
LIMA1-205ENST00000550592 ITPKCQ96DU7 683 aa8.67□□□□□ -1.02
LIMA1-205ENST00000550592 TNFRSF10AO00220 468 aa8.66□□□□□ -1.02
LIMA1-205ENST00000550592 LGR5O75473 907 aa8.66□□□□□ -1.02
LIMA1-205ENST00000550592 ZIC2O95409 532 aaPredicted RBP8.66□□□□□ -1.02
LIMA1-205ENST00000550592 IGFBP4P22692 258 aa8.66□□□□□ -1.02
LIMA1-205ENST00000550592 CBLBQ13191 982 aa8.66□□□□□ -1.02
LIMA1-205ENST00000550592 GAS2L2Q8NHY3 880 aa8.66□□□□□ -1.02
LIMA1-205ENST00000550592 ARHGEF10LQ9HCE6 1279 aa8.66□□□□□ -1.02
LIMA1-205ENST00000550592 SERTAD1Q9UHV2 236 aa8.66□□□□□ -1.02
LIMA1-205ENST00000550592 TIMP2P16035 220 aa8.65□□□□□ -1.02
LIMA1-205ENST00000550592 SCNN1AP37088 669 aa8.65□□□□□ -1.02
LIMA1-205ENST00000550592 SMTNP53814 917 aa8.65□□□□□ -1.02
LIMA1-205ENST00000550592 WDR4P57081 412 aaKnown RBP8.65□□□□□ -1.02
LIMA1-205ENST00000550592 MTFR1Q15390 333 aa8.65□□□□□ -1.02
LIMA1-205ENST00000550592 SND1Q7KZF4 910 aaKnown RBP eCLIP8.65□□□□□ -1.02
LIMA1-205ENST00000550592 MTMR7Q9Y216 660 aa8.65□□□□□ -1.02
LIMA1-205ENST00000550592 HRH3Q9Y5N1 445 aa8.65□□□□□ -1.02
LIMA1-205ENST00000550592 A0A1W2PRU2 124 aa8.64□□□□□ -1.03
LIMA1-205ENST00000550592 A6NJY4 79 aa8.64□□□□□ -1.03
LIMA1-205ENST00000550592 IL2RAP01589 272 aa8.64□□□□□ -1.03
LIMA1-205ENST00000550592 PTGIRP43119 386 aa8.64□□□□□ -1.03
LIMA1-205ENST00000550592 FOXK2Q01167 660 aa8.64□□□□□ -1.03
LIMA1-205ENST00000550592 ESYT1Q9BSJ8 1104 aa8.64□□□□□ -1.03
LIMA1-205ENST00000550592 ZFAND3Q9H8U3 227 aa8.64□□□□□ -1.03
LIMA1-205ENST00000550592 SCHIP1Q9P0W5 487 aaPredicted RBP8.64□□□□□ -1.03
LIMA1-205ENST00000550592 ATAD2Q6PL18 1390 aa8.63□□□□□ -1.03
LIMA1-205ENST00000550592 C21orf2O43822 256 aa8.63□□□□□ -1.03
LIMA1-205ENST00000550592 RGS20O76081 388 aa8.63□□□□□ -1.03
LIMA1-205ENST00000550592 CLN3Q13286 438 aa8.63□□□□□ -1.03
LIMA1-205ENST00000550592 FKBP5Q13451 457 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-205ENST00000550592 SCG3Q8WXD2 468 aaKnown RBP8.63□□□□□ -1.03
LIMA1-205ENST00000550592 CNKSR1Q969H4 720 aa8.63□□□□□ -1.03
LIMA1-205ENST00000550592 COL26A1Q96A83 441 aa8.63□□□□□ -1.03
LIMA1-205ENST00000550592 RAB6BQ9NRW1 208 aa8.63□□□□□ -1.03
LIMA1-205ENST00000550592 CDK2AP1O14519 115 aa8.62□□□□□ -1.03
LIMA1-205ENST00000550592 FOXO3O43524 673 aa8.62□□□□□ -1.03
LIMA1-205ENST00000550592 MFAP1P55081 439 aaKnown RBP8.62□□□□□ -1.03
LIMA1-205ENST00000550592 TSPAN10Q9H1Z9 355 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-205ENST00000550592 PTCD1O75127 700 aaKnown RBP8.61□□□□□ -1.03
LIMA1-205ENST00000550592 SERPINB4P48594 390 aa8.61□□□□□ -1.03
LIMA1-205ENST00000550592 STAG2Q8N3U4 1231 aa8.61□□□□□ -1.03
LIMA1-205ENST00000550592 HPS1Q92902 700 aa8.61□□□□□ -1.03
LIMA1-205ENST00000550592 AGBL1Q96MI9 1066 aa8.61□□□□□ -1.03
LIMA1-205ENST00000550592 PURBQ96QR8 312 aaKnown RBP8.61□□□□□ -1.03
LIMA1-205ENST00000550592 EGFL7Q9UHF1 273 aa8.61□□□□□ -1.03
LIMA1-205ENST00000550592 SOWAHDA6NJG2 315 aa8.6□□□□□ -1.03
LIMA1-205ENST00000550592 CENPCQ03188 943 aa8.6□□□□□ -1.03
LIMA1-205ENST00000550592 SEPT3Q9UH03 358 aa8.6□□□□□ -1.03
LIMA1-205ENST00000550592 IQSEC3Q9UPP2 1182 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-205ENST00000550592 CAPN12Q6ZSI9 719 aa8.59□□□□□ -1.03
LIMA1-205ENST00000550592 SLC9A9Q8IVB4 645 aa8.59□□□□□ -1.03
LIMA1-205ENST00000550592 MEIOBQ8N635 442 aa8.59□□□□□ -1.03
LIMA1-205ENST00000550592 FHDC1Q9C0D6 1143 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-205ENST00000550592 PPP1R12BO60237 982 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-205ENST00000550592 RELBQ01201 579 aa8.58□□□□□ -1.04
LIMA1-205ENST00000550592 TLR1Q15399 786 aa8.58□□□□□ -1.04
LIMA1-205ENST00000550592 CCDC27Q2M243 656 aa8.58□□□□□ -1.04
LIMA1-205ENST00000550592 POTEAQ6S8J7 498 aa8.58□□□□□ -1.04
LIMA1-205ENST00000550592 GTF3C2Q8WUA4 911 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-205ENST00000550592 NLRP3Q96P20 1036 aa8.58□□□□□ -1.04
LIMA1-205ENST00000550592 MKNK1Q9BUB5 465 aa8.58□□□□□ -1.04
LIMA1-205ENST00000550592 C2orf49Q9BVC5 232 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-205ENST00000550592 ZNF395Q9H8N7 513 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-205ENST00000550592 MEN1O00255 615 aa8.57□□□□□ -1.04
LIMA1-205ENST00000550592 PSMA6P60900 246 aaKnown RBP8.57□□□□□ -1.04
LIMA1-205ENST00000550592 TBCELQ5QJ74 424 aa8.57□□□□□ -1.04
LIMA1-205ENST00000550592 RGS22Q8NE09 1264 aa8.57□□□□□ -1.04
LIMA1-205ENST00000550592 CHMP7Q8WUX9 453 aaPredicted RBP8.57□□□□□ -1.04
LIMA1-205ENST00000550592 TSEN34Q9BSV6 310 aaKnown RBP8.57□□□□□ -1.04
LIMA1-205ENST00000550592 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.57□□□□□ -1.042e-6■■■■■ 96.1
LIMA1-205ENST00000550592 USP3Q9Y6I4 520 aa8.57□□□□□ -1.04
LIMA1-205ENST00000550592 CAPN5O15484 640 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-205ENST00000550592 ICMTO60725 284 aa8.56□□□□□ -1.04
LIMA1-205ENST00000550592 PPARGC1BQ86YN6 1023 aaKnown RBP8.56□□□□□ -1.04
LIMA1-205ENST00000550592 ZNF295-AS1Q8N0V1 137 aa8.56□□□□□ -1.04
LIMA1-205ENST00000550592 NBPF15Q8N660 670 aa8.56□□□□□ -1.04
LIMA1-205ENST00000550592 PDZRN3Q9UPQ7 1066 aa8.56□□□□□ -1.04
LIMA1-205ENST00000550592 ABL1P00519 1130 aa8.55□□□□□ -1.04
LIMA1-205ENST00000550592 GPC1P35052 558 aa8.55□□□□□ -1.04
LIMA1-205ENST00000550592 FKBP4Q02790 459 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIMA1-205ENST00000550592 TEAD4Q15561 434 aa8.55□□□□□ -1.04
LIMA1-205ENST00000550592 VTI1AQ96AJ9 217 aa8.55□□□□□ -1.04
LIMA1-205ENST00000550592 DNMT3AQ9Y6K1 912 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-205ENST00000550592 SPINT1O43278 529 aa8.54□□□□□ -1.04
LIMA1-205ENST00000550592 RNF144AP50876 292 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-205ENST00000550592 HIRAP54198 1017 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-205ENST00000550592 SF3B2Q13435 895 aaKnown RBP8.54□□□□□ -1.04
LIMA1-205ENST00000550592 NAA30Q147X3 362 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-205ENST00000550592 ZSCAN10Q96SZ4 725 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-205ENST00000550592 GRIP2Q9C0E4 1043 aa8.54□□□□□ -1.04
LIMA1-205ENST00000550592 SERTM1A2A2V5 107 aa8.53□□□□□ -1.04
LIMA1-205ENST00000550592 AVPP01185 164 aa8.53□□□□□ -1.04
LIMA1-205ENST00000550592 NOS2P35228 1153 aa8.53□□□□□ -1.04
LIMA1-205ENST00000550592 ZNF211Q13398 564 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-205ENST00000550592 ECM1Q16610 540 aa8.53□□□□□ -1.04
LIMA1-205ENST00000550592 CHMP3Q9Y3E7 222 aa8.53□□□□□ -1.04
LIMA1-205ENST00000550592 EML1O00423 815 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms