RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 GRIN3BO60391 1043 aa14.7□□□□□ -0.06
VTI1BP3-201ENST00000550220 AKAP4Q5JQC9 854 aa14.7□□□□□ -0.06
VTI1BP3-201ENST00000550220 RC3H1Q5TC82 1133 aaKnown RBP14.7□□□□□ -0.06
VTI1BP3-201ENST00000550220 RBM42Q9BTD8 480 aaKnown RBP14.7□□□□□ -0.06
VTI1BP3-201ENST00000550220 GNPATO15228 680 aa14.69□□□□□ -0.06
VTI1BP3-201ENST00000550220 PHF14O94880 888 aa14.69□□□□□ -0.06
VTI1BP3-201ENST00000550220 ADRA2BP18089 450 aa14.69□□□□□ -0.06
VTI1BP3-201ENST00000550220 ITPK1Q13572 414 aa14.69□□□□□ -0.06
VTI1BP3-201ENST00000550220 TRAPPC3LQ5T215 181 aa14.69□□□□□ -0.06
VTI1BP3-201ENST00000550220 MSL1Q68DK7 614 aa14.69□□□□□ -0.06
VTI1BP3-201ENST00000550220 RTCBQ9Y3I0 505 aaKnown RBP14.69□□□□□ -0.06
VTI1BP3-201ENST00000550220 NFATC2IPQ8NCF5 419 aa14.68□□□□□ -0.06
VTI1BP3-201ENST00000550220 NLGN1Q8N2Q7 840 aa14.67□□□□□ -0.06
VTI1BP3-201ENST00000550220 CNTNAP4Q9C0A0 1308 aa14.66□□□□□ -0.06
VTI1BP3-201ENST00000550220 C5P01031 1676 aa14.66□□□□□ -0.06
VTI1BP3-201ENST00000550220 PELP1Q8IZL8 1130 aaKnown RBP14.66□□□□□ -0.06
VTI1BP3-201ENST00000550220 ITGB4P16144 1822 aa14.66□□□□□ -0.06
VTI1BP3-201ENST00000550220 TOGARAM1Q9Y4F4 1720 aa14.66□□□□□ -0.06
VTI1BP3-201ENST00000550220 KDM6AO15550 1401 aaPredicted RBP14.66□□□□□ -0.06
VTI1BP3-201ENST00000550220 RPS6KA4O75676 772 aa14.65□□□□□ -0.06
VTI1BP3-201ENST00000550220 HMOX1P09601 288 aa14.65□□□□□ -0.06
VTI1BP3-201ENST00000550220 NLGN2Q8NFZ4 835 aa14.65□□□□□ -0.06
VTI1BP3-201ENST00000550220 CFAP53Q96M91 514 aa14.65□□□□□ -0.06
VTI1BP3-201ENST00000550220 C4BP0C0L5 1744 aa14.65□□□□□ -0.06
VTI1BP3-201ENST00000550220 COL24A1Q17RW2 1714 aa14.65□□□□□ -0.06
VTI1BP3-201ENST00000550220 PTCD1O75127 700 aaKnown RBP14.64□□□□□ -0.07
VTI1BP3-201ENST00000550220 RFC4P35249 363 aa14.64□□□□□ -0.07
VTI1BP3-201ENST00000550220 AMIGO3Q86WK7 504 aa14.64□□□□□ -0.07
VTI1BP3-201ENST00000550220 SLC4A9Q96Q91 983 aa14.64□□□□□ -0.07
VTI1BP3-201ENST00000550220 SLC52A2Q9HAB3 445 aa14.64□□□□□ -0.07
VTI1BP3-201ENST00000550220 ZNF784Q8NCA9 323 aaPredicted RBP14.63□□□□□ -0.07
VTI1BP3-201ENST00000550220 RNMTO43148 476 aaKnown RBP14.62□□□□□ -0.07
VTI1BP3-201ENST00000550220 MTHFSDQ2M296 383 aaKnown RBP14.62□□□□□ -0.07
VTI1BP3-201ENST00000550220 GAS2L2Q8NHY3 880 aa14.62□□□□□ -0.07
VTI1BP3-201ENST00000550220 ARHGEF1Q92888 912 aaKnown RBP14.62□□□□□ -0.07
VTI1BP3-201ENST00000550220 NUDCQ9Y266 331 aa14.62□□□□□ -0.07
VTI1BP3-201ENST00000550220 U2SURPO15042 1029 aaKnown RBP14.61□□□□□ -0.07
VTI1BP3-201ENST00000550220 LGR6Q9HBX8 967 aa14.61□□□□□ -0.07
VTI1BP3-201ENST00000550220 TAF1LQ8IZX4 1826 aa14.61□□□□□ -0.07
VTI1BP3-201ENST00000550220 TUBGCP6Q96RT7 1819 aa14.6□□□□□ -0.07
VTI1BP3-201ENST00000550220 MMP10P09238 476 aa14.6□□□□□ -0.07
VTI1BP3-201ENST00000550220 SMIM5Q71RC9 77 aa14.6□□□□□ -0.07
VTI1BP3-201ENST00000550220 VSIG10Q8N0Z9 540 aa14.6□□□□□ -0.07
VTI1BP3-201ENST00000550220 UTRNP46939 3433 aa14.6□□□□□ -0.07
VTI1BP3-201ENST00000550220 YBX3P16989 372 aaKnown RBP eCLIP14.59□□□□□ -0.07
VTI1BP3-201ENST00000550220 CRKLP46109 303 aaKnown RBP14.59□□□□□ -0.07
VTI1BP3-201ENST00000550220 TGFB2P61812 414 aa14.59□□□□□ -0.07
VTI1BP3-201ENST00000550220 CNGB1Q14028 1251 aaPredicted RBP14.59□□□□□ -0.07
VTI1BP3-201ENST00000550220 GNAT3A8MTJ3 354 aa14.58□□□□□ -0.08
VTI1BP3-201ENST00000550220 GYS1P13807 737 aa14.58□□□□□ -0.08
VTI1BP3-201ENST00000550220 CCDC87Q9NVE4 849 aa14.58□□□□□ -0.08
VTI1BP3-201ENST00000550220 PARP3Q9Y6F1 533 aa14.58□□□□□ -0.08
VTI1BP3-201ENST00000550220 ZNF831Q5JPB2 1677 aa14.58□□□□□ -0.08
VTI1BP3-201ENST00000550220 TEFQ10587 303 aa14.57□□□□□ -0.08
VTI1BP3-201ENST00000550220 TTC5Q8N0Z6 440 aa14.57□□□□□ -0.08
VTI1BP3-201ENST00000550220 UBR3Q6ZT12 1888 aa14.57□□□□□ -0.08
VTI1BP3-201ENST00000550220 ZPR1O75312 459 aa14.56□□□□□ -0.08
VTI1BP3-201ENST00000550220 INTS5Q6P9B9 1019 aaKnown RBP14.56□□□□□ -0.08
VTI1BP3-201ENST00000550220 TEX13AQ9BXU3 409 aaPredicted RBP14.56□□□□□ -0.08
VTI1BP3-201ENST00000550220 FCHSD2O94868 740 aa14.55□□□□□ -0.08
VTI1BP3-201ENST00000550220 STARD3NLO95772 234 aa14.55□□□□□ -0.08
VTI1BP3-201ENST00000550220 PPP2R1AP30153 589 aa14.55□□□□□ -0.08
VTI1BP3-201ENST00000550220 DNAJC10Q8IXB1 793 aa14.55□□□□□ -0.08
VTI1BP3-201ENST00000550220 CYP19A1P11511 503 aaPredicted RBP14.54□□□□□ -0.08
VTI1BP3-201ENST00000550220 SLC39A6Q13433 755 aa14.54□□□□□ -0.08
VTI1BP3-201ENST00000550220 USP42Q9H9J4 1324 aaKnown RBP14.54□□□□□ -0.08
VTI1BP3-201ENST00000550220 COL3A1P02461 1466 aaPredicted RBP14.53□□□□□ -0.08
VTI1BP3-201ENST00000550220 U2AF1L5P0DN76 240 aaPredicted RBP14.53□□□□□ -0.08
VTI1BP3-201ENST00000550220 PRKAR2BP31323 418 aa14.53□□□□□ -0.08
VTI1BP3-201ENST00000550220 U2AF1Q01081 240 aaKnown RBP eCLIP14.53□□□□□ -0.08
VTI1BP3-201ENST00000550220 IL17REQ8NFR9 667 aa14.53□□□□□ -0.08
VTI1BP3-201ENST00000550220 CHD4Q14839 1912 aa14.53□□□□□ -0.08
VTI1BP3-201ENST00000550220 MRC1P22897 1456 aa14.52□□□□□ -0.08
VTI1BP3-201ENST00000550220 A0A087WZG4 1122 aa14.52□□□□□ -0.09
VTI1BP3-201ENST00000550220 NEFMP07197 916 aa14.52□□□□□ -0.09
VTI1BP3-201ENST00000550220 ZNF790Q6PG37 636 aa14.52□□□□□ -0.09
VTI1BP3-201ENST00000550220 RTF1Q92541 710 aaKnown RBP14.52□□□□□ -0.09
VTI1BP3-201ENST00000550220 RSPH6AQ9H0K4 717 aa14.52□□□□□ -0.09
VTI1BP3-201ENST00000550220 NARFQ9UHQ1 456 aa14.52□□□□□ -0.09
VTI1BP3-201ENST00000550220 SOS1Q07889 1333 aaPredicted RBP14.51□□□□□ -0.09
VTI1BP3-201ENST00000550220 HTATSF1O43719 755 aaKnown RBP14.51□□□□□ -0.09
VTI1BP3-201ENST00000550220 FKBP8Q14318 412 aa14.51□□□□□ -0.09
VTI1BP3-201ENST00000550220 GIGYF1O75420 1035 aaPredicted RBP14.5□□□□□ -0.09
VTI1BP3-201ENST00000550220 TM4SF1P30408 202 aa14.5□□□□□ -0.09
VTI1BP3-201ENST00000550220 NPM2Q86SE8 214 aaKnown RBP14.5□□□□□ -0.09
VTI1BP3-201ENST00000550220 PHACTR3Q96KR7 559 aa14.5□□□□□ -0.09
VTI1BP3-201ENST00000550220 FMNL2Q96PY5 1086 aa14.5□□□□□ -0.09
VTI1BP3-201ENST00000550220 PNNQ9H307 717 aaKnown RBP14.5□□□□□ -0.09
VTI1BP3-201ENST00000550220 SRP68Q9UHB9 627 aaKnown RBP14.5□□□□□ -0.09
VTI1BP3-201ENST00000550220 SCN11AQ9UI33 1791 aa14.5□□□□□ -0.09
VTI1BP3-201ENST00000550220 A0A0G2JLW4 131 aa14.49□□□□□ -0.09
VTI1BP3-201ENST00000550220 BTBD11A6QL63 1104 aa14.49□□□□□ -0.09
VTI1BP3-201ENST00000550220 C1QTNF8P60827 252 aa14.49□□□□□ -0.09
VTI1BP3-201ENST00000550220 USPL1Q5W0Q7 1092 aa14.49□□□□□ -0.09
VTI1BP3-201ENST00000550220 C10orf71Q711Q0 1435 aa14.49□□□□□ -0.09
VTI1BP3-201ENST00000550220 CEMIPQ8WUJ3 1361 aa14.48□□□□□ -0.09
VTI1BP3-201ENST00000550220 DPEP1P16444 411 aa14.48□□□□□ -0.09
VTI1BP3-201ENST00000550220 ZNF496Q96IT1 587 aaPredicted RBP14.48□□□□□ -0.09
VTI1BP3-201ENST00000550220 PIM2Q9P1W9 311 aa14.48□□□□□ -0.09
VTI1BP3-201ENST00000550220 BCS1LQ9Y276 419 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms