RNA–Protein interactions for RNA: ENST00000549271.1

DDX54-206, Transcript of DEAD-box helicase 54, humanhuman

TSL 2

Gene DDX54, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-206ENST00000549271 C4AP0C0L4 1744 aa17.14■□□□□ 0.33
DDX54-206ENST00000549271 LOC102724428A0A0B4J2F2 783 aa17.14■□□□□ 0.33
DDX54-206ENST00000549271 SLC24A1O60721 1099 aa17.14■□□□□ 0.33
DDX54-206ENST00000549271 SIK1P57059 783 aa17.14■□□□□ 0.33
DDX54-206ENST00000549271 C9orf131Q5VYM1 1079 aa17.14■□□□□ 0.33
DDX54-206ENST00000549271 SBF1O95248 1867 aa17.14■□□□□ 0.33
DDX54-206ENST00000549271 GNPATO15228 680 aa17.13■□□□□ 0.33
DDX54-206ENST00000549271 FCHSD2O94868 740 aa17.12■□□□□ 0.33
DDX54-206ENST00000549271 DPEP1P16444 411 aa17.12■□□□□ 0.33
DDX54-206ENST00000549271 ITPK1Q13572 414 aa17.12■□□□□ 0.33
DDX54-206ENST00000549271 RRS1Q15050 365 aaKnown RBP17.12■□□□□ 0.33
DDX54-206ENST00000549271 TESK2Q96S53 571 aa17.12■□□□□ 0.33
DDX54-206ENST00000549271 KDM2BQ8NHM5 1336 aa17.12■□□□□ 0.33
DDX54-206ENST00000549271 NKX1-1Q15270 411 aaPredicted RBP17.11■□□□□ 0.33
DDX54-206ENST00000549271 INSRP06213 1382 aa17.11■□□□□ 0.33
DDX54-206ENST00000549271 KCNA3P22001 575 aa17.1■□□□□ 0.33
DDX54-206ENST00000549271 NLGN1Q8N2Q7 840 aa17.1■□□□□ 0.33
DDX54-206ENST00000549271 HSPA1AP0DMV8 641 aaKnown RBP17.09■□□□□ 0.33
DDX54-206ENST00000549271 HSPA1BP0DMV9 641 aaKnown RBP17.09■□□□□ 0.33
DDX54-206ENST00000549271 SMC1BQ8NDV3 1235 aa17.09■□□□□ 0.33
DDX54-206ENST00000549271 PCGF6Q9BYE7 350 aa17.09■□□□□ 0.33
DDX54-206ENST00000549271 RRAGCQ9HB90 399 aa17.09■□□□□ 0.33
DDX54-206ENST00000549271 ZNF831Q5JPB2 1677 aa17.08■□□□□ 0.32
DDX54-206ENST00000549271 ST20-MTHFSA0A0A6YYL1 179 aa17.08■□□□□ 0.32
DDX54-206ENST00000549271 TMF1P82094 1093 aa17.08■□□□□ 0.32
DDX54-206ENST00000549271 HSP90AB2PQ58FF8 381 aa17.08■□□□□ 0.32
DDX54-206ENST00000549271 DCAF5Q96JK2 942 aa17.08■□□□□ 0.32
DDX54-206ENST00000549271 CCDC87Q9NVE4 849 aa17.08■□□□□ 0.32
DDX54-206ENST00000549271 NCAPD2Q15021 1401 aa17.07■□□□□ 0.32
DDX54-206ENST00000549271 SLC34A2O95436 690 aa17.07■□□□□ 0.32
DDX54-206ENST00000549271 ATP6V1AP38606 617 aa17.07■□□□□ 0.32
DDX54-206ENST00000549271 ASAP1Q9ULH1 1129 aa17.07■□□□□ 0.32
DDX54-206ENST00000549271 COL5A3P25940 1745 aaPredicted RBP17.07■□□□□ 0.32
DDX54-206ENST00000549271 TRAPPC3LQ5T215 181 aa17.06■□□□□ 0.32
DDX54-206ENST00000549271 RNF181Q9P0P0 153 aa17.06■□□□□ 0.32
DDX54-206ENST00000549271 FLT4P35916 1363 aa17.05■□□□□ 0.32
DDX54-206ENST00000549271 KIF24Q5T7B8 1368 aa17.05■□□□□ 0.32
DDX54-206ENST00000549271 TMOD3Q9NYL9 352 aa17.05■□□□□ 0.32
DDX54-206ENST00000549271 PIM2Q9P1W9 311 aa17.05■□□□□ 0.32
DDX54-206ENST00000549271 KDRP35968 1356 aa17.04■□□□□ 0.32
DDX54-206ENST00000549271 FYB1O15117 783 aa17.04■□□□□ 0.32
DDX54-206ENST00000549271 GYS1P13807 737 aa17.04■□□□□ 0.32
DDX54-206ENST00000549271 ARHGEF1Q92888 912 aaKnown RBP17.04■□□□□ 0.32
DDX54-206ENST00000549271 RTCBQ9Y3I0 505 aaKnown RBP17.04■□□□□ 0.32
DDX54-206ENST00000549271 MYH14Q7Z406 1995 aaKnown RBP17.03■□□□□ 0.32
DDX54-206ENST00000549271 ADRA2BP18089 450 aa17.03■□□□□ 0.32
DDX54-206ENST00000549271 ATG3Q9NT62 314 aa17.03■□□□□ 0.32
DDX54-206ENST00000549271 PARP3Q9Y6F1 533 aa17.03■□□□□ 0.32
DDX54-206ENST00000549271 KIF20BQ96Q89 1820 aa17.03■□□□□ 0.32
DDX54-206ENST00000549271 DALRD3Q5D0E6 543 aaKnown RBP17.02■□□□□ 0.32
DDX54-206ENST00000549271 GGNBP2Q9H3C7 697 aa17.02■□□□□ 0.32
DDX54-206ENST00000549271 SPG7Q9UQ90 795 aa17.02■□□□□ 0.32
DDX54-206ENST00000549271 ZC3H4Q9UPT8 1303 aaKnown RBP17.01■□□□□ 0.31
DDX54-206ENST00000549271 RC3H1Q5TC82 1133 aaKnown RBP17.01■□□□□ 0.31
DDX54-206ENST00000549271 SLC4A9Q96Q91 983 aa17.01■□□□□ 0.31
DDX54-206ENST00000549271 KDM6AO15550 1401 aaPredicted RBP17.01■□□□□ 0.31
DDX54-206ENST00000549271 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17■□□□□ 0.31
DDX54-206ENST00000549271 CNTNAP4Q9C0A0 1308 aa16.99■□□□□ 0.31
DDX54-206ENST00000549271 CLSPNQ9HAW4 1339 aa16.99■□□□□ 0.31
DDX54-206ENST00000549271 ANKRD26Q9UPS8 1709 aa16.99■□□□□ 0.31
DDX54-206ENST00000549271 RPS6KA4O75676 772 aa16.99■□□□□ 0.31
DDX54-206ENST00000549271 VEGFAP15692 232 aaPredicted RBP16.98■□□□□ 0.31
DDX54-206ENST00000549271 PHKG2P15735 406 aa16.98■□□□□ 0.31
DDX54-206ENST00000549271 RFC4P35249 363 aa16.98■□□□□ 0.31
DDX54-206ENST00000549271 CCDC88AQ3V6T2 1871 aa16.98■□□□□ 0.31
DDX54-206ENST00000549271 TIAM2Q8IVF5 1701 aa16.97■□□□□ 0.31
DDX54-206ENST00000549271 GLTPD2A6NH11 291 aa16.96■□□□□ 0.31
DDX54-206ENST00000549271 IFNL2Q8IZJ0 200 aa16.96■□□□□ 0.31
DDX54-206ENST00000549271 TIMELESSQ9UNS1 1208 aa16.96■□□□□ 0.31
DDX54-206ENST00000549271 CHRNA5P30532 468 aa16.95■□□□□ 0.3
DDX54-206ENST00000549271 DDR1Q08345 913 aa16.95■□□□□ 0.3
DDX54-206ENST00000549271 CDCA8Q53HL2 280 aa16.95■□□□□ 0.3
DDX54-206ENST00000549271 DLEC1Q9Y238 1755 aa16.94■□□□□ 0.3
DDX54-206ENST00000549271 RASSF7Q02833 373 aa16.94■□□□□ 0.3
DDX54-206ENST00000549271 EMILIN1Q9Y6C2 1016 aa16.94■□□□□ 0.3
DDX54-206ENST00000549271 FKBP8Q14318 412 aa16.93■□□□□ 0.3
DDX54-206ENST00000549271 RBM42Q9BTD8 480 aaKnown RBP16.93■□□□□ 0.3
DDX54-206ENST00000549271 ADAMTS7Q9UKP4 1686 aa16.93■□□□□ 0.3
DDX54-206ENST00000549271 POTECB2RU33 542 aa16.92■□□□□ 0.3
DDX54-206ENST00000549271 LMNB1P20700 586 aa16.92■□□□□ 0.3
DDX54-206ENST00000549271 EYA1Q99502 592 aa16.92■□□□□ 0.3
DDX54-206ENST00000549271 SRP68Q9UHB9 627 aaKnown RBP16.92■□□□□ 0.3
DDX54-206ENST00000549271 USP42Q9H9J4 1324 aaKnown RBP16.92■□□□□ 0.3
DDX54-206ENST00000549271 AFDNP55196 1824 aaKnown RBP16.91■□□□□ 0.3
DDX54-206ENST00000549271 ERVV-2B6SEH9 535 aa16.91■□□□□ 0.3
DDX54-206ENST00000549271 POLRMTO00411 1230 aaKnown RBP16.9■□□□□ 0.3
DDX54-206ENST00000549271 PRDM10Q9NQV6 1147 aa16.9■□□□□ 0.3
DDX54-206ENST00000549271 WASHC2AQ641Q2 1341 aa16.9■□□□□ 0.3
DDX54-206ENST00000549271 TJP1Q07157 1748 aa16.9■□□□□ 0.3
DDX54-206ENST00000549271 NRXN2Q9P2S2 1712 aa16.9■□□□□ 0.3
DDX54-206ENST00000549271 FOXN1O15353 648 aa16.89■□□□□ 0.29
DDX54-206ENST00000549271 TM4SF1P30408 202 aa16.89■□□□□ 0.29
DDX54-206ENST00000549271 CREBZFQ9NS37 354 aa16.89■□□□□ 0.29
DDX54-206ENST00000549271 DICER1Q9UPY3 1922 aaKnown RBP16.89■□□□□ 0.29
DDX54-206ENST00000549271 CRKLP46109 303 aaKnown RBP16.88■□□□□ 0.29
DDX54-206ENST00000549271 CCER1Q8TC90 406 aaPredicted RBP16.88■□□□□ 0.29
DDX54-206ENST00000549271 CARD14Q9BXL6 1004 aa16.87■□□□□ 0.29
DDX54-206ENST00000549271 MKRN1Q9UHC7 482 aaKnown RBP16.87■□□□□ 0.29
DDX54-206ENST00000549271 VIRMAQ69YN4 1812 aaKnown RBP16.86■□□□□ 0.29
DDX54-206ENST00000549271 NFKBIEO00221 500 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms