RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 KIAA1551Q9HCM1 1747 aa21.49■■□□□ 1.03
CHMP1A-206ENST00000549139 KIF13BQ9NQT8 1826 aa21.48■■□□□ 1.03
CHMP1A-206ENST00000549139 PER1O15534 1290 aaPredicted RBP21.47■■□□□ 1.03
CHMP1A-206ENST00000549139 ITPK1Q13572 414 aa21.47■■□□□ 1.03
CHMP1A-206ENST00000549139 PXDNLA1KZ92 1463 aa21.46■■□□□ 1.03
CHMP1A-206ENST00000549139 DNAJC5GQ8N7S2 189 aa21.46■■□□□ 1.03
CHMP1A-206ENST00000549139 APLP1P51693 650 aa21.45■■□□□ 1.02
CHMP1A-206ENST00000549139 EMILIN1Q9Y6C2 1016 aa21.45■■□□□ 1.02
CHMP1A-206ENST00000549139 GNPATO15228 680 aa21.44■■□□□ 1.02
CHMP1A-206ENST00000549139 ASAP1Q9ULH1 1129 aa21.44■■□□□ 1.02
CHMP1A-206ENST00000549139 MMP10P09238 476 aa21.43■■□□□ 1.02
CHMP1A-206ENST00000549139 AMER1Q5JTC6 1135 aaPredicted RBP21.43■■□□□ 1.02
CHMP1A-206ENST00000549139 N4BP2Q86UW6 1770 aaPredicted RBP21.43■■□□□ 1.02
CHMP1A-206ENST00000549139 TOMM70O94826 608 aa21.42■■□□□ 1.02
CHMP1A-206ENST00000549139 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.42■■□□□ 1.02
CHMP1A-206ENST00000549139 SPG7Q9UQ90 795 aa21.42■■□□□ 1.02
CHMP1A-206ENST00000549139 ATP6V1AP38606 617 aa21.41■■□□□ 1.02
CHMP1A-206ENST00000549139 TGFB2P61812 414 aa21.41■■□□□ 1.02
CHMP1A-206ENST00000549139 TMOD3Q9NYL9 352 aa21.41■■□□□ 1.02
CHMP1A-206ENST00000549139 C10orf71Q711Q0 1435 aa21.4■■□□□ 1.02
CHMP1A-206ENST00000549139 MORC1Q86VD1 984 aa21.4■■□□□ 1.02
CHMP1A-206ENST00000549139 ATG3Q9NT62 314 aa21.4■■□□□ 1.02
CHMP1A-206ENST00000549139 KDRP35968 1356 aa21.39■■□□□ 1.02
CHMP1A-206ENST00000549139 EYA1Q99502 592 aa21.39■■□□□ 1.01
CHMP1A-206ENST00000549139 POLKQ9UBT6 870 aa21.39■■□□□ 1.01
CHMP1A-206ENST00000549139 BRCA1P38398 1863 aaKnown RBP21.39■■□□□ 1.01
CHMP1A-206ENST00000549139 A0A0G2JLW4 131 aa21.38■■□□□ 1.01
CHMP1A-206ENST00000549139 PHKG2P15735 406 aa21.38■■□□□ 1.01
CHMP1A-206ENST00000549139 TNNT2P45379 298 aaPredicted RBP21.37■■□□□ 1.01
CHMP1A-206ENST00000549139 IFNL2Q8IZJ0 200 aa21.37■■□□□ 1.01
CHMP1A-206ENST00000549139 SLC4A9Q96Q91 983 aa21.37■■□□□ 1.01
CHMP1A-206ENST00000549139 NMRK2Q9NPI5 230 aa21.37■■□□□ 1.01
CHMP1A-206ENST00000549139 BCS1LQ9Y276 419 aa21.37■■□□□ 1.01
CHMP1A-206ENST00000549139 NPC1L1Q9UHC9 1359 aa21.36■■□□□ 1.01
CHMP1A-206ENST00000549139 NLGN1Q8N2Q7 840 aa21.36■■□□□ 1.01
CHMP1A-206ENST00000549139 ZNF831Q5JPB2 1677 aa21.36■■□□□ 1.01
CHMP1A-206ENST00000549139 PCNTO95613 3336 aa21.36■■□□□ 1.01
CHMP1A-206ENST00000549139 PPM1GO15355 546 aaPredicted RBP21.35■■□□□ 1.01
CHMP1A-206ENST00000549139 TRAPPC3LQ5T215 181 aa21.35■■□□□ 1.01
CHMP1A-206ENST00000549139 DPEP1P16444 411 aa21.34■■□□□ 1.01
CHMP1A-206ENST00000549139 ARHGAP27Q6ZUM4 889 aa21.34■■□□□ 1.01
CHMP1A-206ENST00000549139 ARHGEF1Q92888 912 aaKnown RBP21.34■■□□□ 1.01
CHMP1A-206ENST00000549139 RTCBQ9Y3I0 505 aaKnown RBP21.34■■□□□ 1.01
CHMP1A-206ENST00000549139 C4AP0C0L4 1744 aa21.34■■□□□ 1.01
CHMP1A-206ENST00000549139 WDR90Q96KV7 1748 aa21.33■■□□□ 1.01
CHMP1A-206ENST00000549139 GYS1P13807 737 aa21.33■■□□□ 1.01
CHMP1A-206ENST00000549139 ADRA2BP18089 450 aa21.33■■□□□ 1.01
CHMP1A-206ENST00000549139 KCNA3P22001 575 aa21.33■■□□□ 1.01
CHMP1A-206ENST00000549139 MYH14Q7Z406 1995 aaKnown RBP21.33■■□□□ 1.01
CHMP1A-206ENST00000549139 COL5A3P25940 1745 aaPredicted RBP21.32■■□□□ 1
CHMP1A-206ENST00000549139 CC2D1BQ5T0F9 858 aaKnown RBP21.32■■□□□ 1
CHMP1A-206ENST00000549139 RC3H1Q5TC82 1133 aaKnown RBP21.32■■□□□ 1
CHMP1A-206ENST00000549139 RBM46Q8TBY0 533 aaKnown RBP21.32■■□□□ 1
CHMP1A-206ENST00000549139 ARFGEF1Q9Y6D6 1849 aa21.32■■□□□ 1
CHMP1A-206ENST00000549139 CCDC87Q9NVE4 849 aa21.31■■□□□ 1
CHMP1A-206ENST00000549139 PLEKHG2Q9H7P9 1386 aa21.31■■□□□ 1
CHMP1A-206ENST00000549139 CNTNAP4Q9C0A0 1308 aa21.3■■□□□ 1
CHMP1A-206ENST00000549139 FCHSD2O94868 740 aa21.3■■□□□ 1
CHMP1A-206ENST00000549139 RPS6KA4O75676 772 aa21.29■■□□□ 1
CHMP1A-206ENST00000549139 C9orf131Q5VYM1 1079 aa21.29■■□□□ 1
CHMP1A-206ENST00000549139 ERVV-2B6SEH9 535 aa21.28■■□□□ 1
CHMP1A-206ENST00000549139 JMYQ8N9B5 988 aa21.28■■□□□ 1
CHMP1A-206ENST00000549139 HTRA3P83110 453 aa21.27■■□□□ 1
CHMP1A-206ENST00000549139 EIF4A2Q14240 407 aaKnown RBP21.27■■□□□ 1
CHMP1A-206ENST00000549139 KLRG1Q96E93 195 aa21.27■■□□□ 1
CHMP1A-206ENST00000549139 PARP3Q9Y6F1 533 aa21.27■■□□□ 1
CHMP1A-206ENST00000549139 RFC4P35249 363 aa21.26■□□□□ 0.99
CHMP1A-206ENST00000549139 DCAF5Q96JK2 942 aa21.26■□□□□ 0.99
CHMP1A-206ENST00000549139 RBM42Q9BTD8 480 aaKnown RBP21.26■□□□□ 0.99
CHMP1A-206ENST00000549139 FSTL1Q12841 308 aa21.25■□□□□ 0.99
CHMP1A-206ENST00000549139 COL13A1Q5TAT6 717 aaPredicted RBP21.24■□□□□ 0.99
CHMP1A-206ENST00000549139 PIM2Q9P1W9 311 aa21.24■□□□□ 0.99
CHMP1A-206ENST00000549139 SBF1O95248 1867 aa21.24■□□□□ 0.99
CHMP1A-206ENST00000549139 KCPQ6ZWJ8 1503 aa21.24■□□□□ 0.99
CHMP1A-206ENST00000549139 KDM6AO15550 1401 aaPredicted RBP21.23■□□□□ 0.99
CHMP1A-206ENST00000549139 MTHFSP49914 203 aa21.23■□□□□ 0.99
CHMP1A-206ENST00000549139 CNGB1Q14028 1251 aaPredicted RBP21.22■□□□□ 0.99
CHMP1A-206ENST00000549139 HSP90AB1P08238 724 aaKnown RBP21.21■□□□□ 0.99
CHMP1A-206ENST00000549139 DDR1Q08345 913 aa21.21■□□□□ 0.99
CHMP1A-206ENST00000549139 C16orf71Q8IYS4 520 aaPredicted RBP21.21■□□□□ 0.99
CHMP1A-206ENST00000549139 DDX10Q13206 875 aaKnown RBP21.2■□□□□ 0.98
CHMP1A-206ENST00000549139 FKBP8Q14318 412 aa21.2■□□□□ 0.98
CHMP1A-206ENST00000549139 DALRD3Q5D0E6 543 aaKnown RBP21.2■□□□□ 0.98
CHMP1A-206ENST00000549139 SRP68Q9UHB9 627 aaKnown RBP21.2■□□□□ 0.98
CHMP1A-206ENST00000549139 KDM2BQ8NHM5 1336 aa21.2■□□□□ 0.98
CHMP1A-206ENST00000549139 RNF181Q9P0P0 153 aa21.19■□□□□ 0.98
CHMP1A-206ENST00000549139 USP42Q9H9J4 1324 aaKnown RBP21.19■□□□□ 0.98
CHMP1A-206ENST00000549139 ADAMTS7Q9UKP4 1686 aa21.18■□□□□ 0.98
CHMP1A-206ENST00000549139 CRKLP46109 303 aaKnown RBP21.18■□□□□ 0.98
CHMP1A-206ENST00000549139 RRAGCQ9HB90 399 aa21.18■□□□□ 0.98
CHMP1A-206ENST00000549139 TNRC6CQ9HCJ0 1690 aaKnown RBP21.18■□□□□ 0.98
CHMP1A-206ENST00000549139 CHRNA5P30532 468 aa21.17■□□□□ 0.98
CHMP1A-206ENST00000549139 IL13P35225 146 aa21.17■□□□□ 0.98
CHMP1A-206ENST00000549139 CABP4P57796 275 aa21.17■□□□□ 0.98
CHMP1A-206ENST00000549139 PLEKHO1Q53GL0 409 aaPredicted RBP21.17■□□□□ 0.98
CHMP1A-206ENST00000549139 TJP1Q07157 1748 aa21.16■□□□□ 0.98
CHMP1A-206ENST00000549139 PTCD1O75127 700 aaKnown RBP21.16■□□□□ 0.98
CHMP1A-206ENST00000549139 ZNF530Q6P9A1 599 aaPredicted RBP21.16■□□□□ 0.98
CHMP1A-206ENST00000549139 POLRMTO00411 1230 aaKnown RBP21.15■□□□□ 0.98
CHMP1A-206ENST00000549139 TM4SF1P30408 202 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms