RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 WASHC2AQ641Q2 1341 aa17.93■□□□□ 0.46
USP28-212ENST00000544750 EYA1Q99502 592 aa17.92■□□□□ 0.46
USP28-212ENST00000544750 KDRP35968 1356 aa17.91■□□□□ 0.46
USP28-212ENST00000544750 GNPATO15228 680 aa17.91■□□□□ 0.46
USP28-212ENST00000544750 ATP6V1AP38606 617 aa17.91■□□□□ 0.46
USP28-212ENST00000544750 TRIM26Q12899 539 aaPredicted RBP17.91■□□□□ 0.46
USP28-212ENST00000544750 TMOD3Q9NYL9 352 aa17.91■□□□□ 0.46
USP28-212ENST00000544750 C4AP0C0L4 1744 aa17.91■□□□□ 0.46
USP28-212ENST00000544750 C10orf71Q711Q0 1435 aa17.9■□□□□ 0.46
USP28-212ENST00000544750 MMP10P09238 476 aa17.9■□□□□ 0.46
USP28-212ENST00000544750 PHKG2P15735 406 aa17.9■□□□□ 0.46
USP28-212ENST00000544750 ATG3Q9NT62 314 aa17.9■□□□□ 0.46
USP28-212ENST00000544750 TGFB2P61812 414 aa17.89■□□□□ 0.45
USP28-212ENST00000544750 IFNL2Q8IZJ0 200 aa17.89■□□□□ 0.45
USP28-212ENST00000544750 SLC4A9Q96Q91 983 aa17.89■□□□□ 0.45
USP28-212ENST00000544750 PLEKHG2Q9H7P9 1386 aa17.89■□□□□ 0.45
USP28-212ENST00000544750 WDR90Q96KV7 1748 aa17.89■□□□□ 0.45
USP28-212ENST00000544750 CDCA8Q53HL2 280 aa17.88■□□□□ 0.45
USP28-212ENST00000544750 DNAJC5GQ8N7S2 189 aa17.88■□□□□ 0.45
USP28-212ENST00000544750 SBF1O95248 1867 aa17.87■□□□□ 0.45
USP28-212ENST00000544750 APLP1P51693 650 aa17.87■□□□□ 0.45
USP28-212ENST00000544750 TOMM70O94826 608 aa17.86■□□□□ 0.45
USP28-212ENST00000544750 POLKQ9UBT6 870 aa17.86■□□□□ 0.45
USP28-212ENST00000544750 A0A0G2JLW4 131 aa17.85■□□□□ 0.45
USP28-212ENST00000544750 PPM1GO15355 546 aaPredicted RBP17.85■□□□□ 0.45
USP28-212ENST00000544750 TRAPPC3LQ5T215 181 aa17.85■□□□□ 0.45
USP28-212ENST00000544750 RC3H1Q5TC82 1133 aaKnown RBP17.85■□□□□ 0.45
USP28-212ENST00000544750 NLGN1Q8N2Q7 840 aa17.85■□□□□ 0.45
USP28-212ENST00000544750 BCS1LQ9Y276 419 aa17.85■□□□□ 0.45
USP28-212ENST00000544750 ARHGEF1Q92888 912 aaKnown RBP17.84■□□□□ 0.45
USP28-212ENST00000544750 RTCBQ9Y3I0 505 aaKnown RBP17.84■□□□□ 0.45
USP28-212ENST00000544750 CNTNAP4Q9C0A0 1308 aa17.83■□□□□ 0.44
USP28-212ENST00000544750 GYS1P13807 737 aa17.83■□□□□ 0.44
USP28-212ENST00000544750 ADRA2BP18089 450 aa17.83■□□□□ 0.44
USP28-212ENST00000544750 KCNA3P22001 575 aa17.83■□□□□ 0.44
USP28-212ENST00000544750 ERVV-2B6SEH9 535 aa17.82■□□□□ 0.44
USP28-212ENST00000544750 DPEP1P16444 411 aa17.82■□□□□ 0.44
USP28-212ENST00000544750 EIF4A2Q14240 407 aaKnown RBP17.82■□□□□ 0.44
USP28-212ENST00000544750 NMRK2Q9NPI5 230 aa17.82■□□□□ 0.44
USP28-212ENST00000544750 ADAMTS7Q9UKP4 1686 aa17.82■□□□□ 0.44
USP28-212ENST00000544750 KDM6AO15550 1401 aaPredicted RBP17.81■□□□□ 0.44
USP28-212ENST00000544750 RPS6KA4O75676 772 aa17.81■□□□□ 0.44
USP28-212ENST00000544750 CCDC87Q9NVE4 849 aa17.81■□□□□ 0.44
USP28-212ENST00000544750 TJP1Q07157 1748 aa17.81■□□□□ 0.44
USP28-212ENST00000544750 ARHGAP27Q6ZUM4 889 aa17.8■□□□□ 0.44
USP28-212ENST00000544750 DCAF5Q96JK2 942 aa17.79■□□□□ 0.44
USP28-212ENST00000544750 SCN11AQ9UI33 1791 aa17.79■□□□□ 0.44
USP28-212ENST00000544750 TNRC6CQ9HCJ0 1690 aaKnown RBP17.78■□□□□ 0.44
USP28-212ENST00000544750 FCHSD2O94868 740 aa17.78■□□□□ 0.44
USP28-212ENST00000544750 RBM46Q8TBY0 533 aaKnown RBP17.78■□□□□ 0.44
USP28-212ENST00000544750 RBM42Q9BTD8 480 aaKnown RBP17.78■□□□□ 0.44
USP28-212ENST00000544750 VIRMAQ69YN4 1812 aaKnown RBP17.77■□□□□ 0.44
USP28-212ENST00000544750 C9orf131Q5VYM1 1079 aa17.77■□□□□ 0.44
USP28-212ENST00000544750 PARP3Q9Y6F1 533 aa17.77■□□□□ 0.44
USP28-212ENST00000544750 AFDNP55196 1824 aaKnown RBP17.77■□□□□ 0.43
USP28-212ENST00000544750 HSP90AB1P08238 724 aaKnown RBP17.76■□□□□ 0.43
USP28-212ENST00000544750 RFC4P35249 363 aa17.76■□□□□ 0.43
USP28-212ENST00000544750 KCPQ6ZWJ8 1503 aa17.76■□□□□ 0.43
USP28-212ENST00000544750 CCDC88AQ3V6T2 1871 aa17.75■□□□□ 0.43
USP28-212ENST00000544750 DDR1Q08345 913 aa17.74■□□□□ 0.43
USP28-212ENST00000544750 JMYQ8N9B5 988 aa17.74■□□□□ 0.43
USP28-212ENST00000544750 PIM2Q9P1W9 311 aa17.74■□□□□ 0.43
USP28-212ENST00000544750 DLEC1Q9Y238 1755 aa17.74■□□□□ 0.43
USP28-212ENST00000544750 PCNTO95613 3336 aa17.74■□□□□ 0.43
USP28-212ENST00000544750 NRXN2Q9P2S2 1712 aa17.73■□□□□ 0.43
USP28-212ENST00000544750 PLEKHO1Q53GL0 409 aaPredicted RBP17.73■□□□□ 0.43
USP28-212ENST00000544750 KLRG1Q96E93 195 aa17.73■□□□□ 0.43
USP28-212ENST00000544750 SRP68Q9UHB9 627 aaKnown RBP17.73■□□□□ 0.43
USP28-212ENST00000544750 USP42Q9H9J4 1324 aaKnown RBP17.72■□□□□ 0.43
USP28-212ENST00000544750 CRKLP46109 303 aaKnown RBP17.72■□□□□ 0.43
USP28-212ENST00000544750 CABP4P57796 275 aa17.72■□□□□ 0.43
USP28-212ENST00000544750 HTRA3P83110 453 aa17.72■□□□□ 0.43
USP28-212ENST00000544750 FSTL1Q12841 308 aa17.72■□□□□ 0.43
USP28-212ENST00000544750 FKBP8Q14318 412 aa17.72■□□□□ 0.43
USP28-212ENST00000544750 ZNF530Q6P9A1 599 aaPredicted RBP17.72■□□□□ 0.43
USP28-212ENST00000544750 TNNT2P45379 298 aaPredicted RBP17.71■□□□□ 0.43
USP28-212ENST00000544750 AMOTQ4VCS5 1084 aa17.71■□□□□ 0.43
USP28-212ENST00000544750 PTCD1O75127 700 aaKnown RBP17.7■□□□□ 0.42
USP28-212ENST00000544750 TM4SF1P30408 202 aa17.7■□□□□ 0.42
USP28-212ENST00000544750 DALRD3Q5D0E6 543 aaKnown RBP17.7■□□□□ 0.42
USP28-212ENST00000544750 POLRMTO00411 1230 aaKnown RBP17.69■□□□□ 0.42
USP28-212ENST00000544750 AEBP1Q8IUX7 1158 aa17.69■□□□□ 0.42
USP28-212ENST00000544750 NFATC2IPQ8NCF5 419 aa17.69■□□□□ 0.42
USP28-212ENST00000544750 RNF181Q9P0P0 153 aa17.69■□□□□ 0.42
USP28-212ENST00000544750 KDM2BQ8NHM5 1336 aa17.69■□□□□ 0.42
USP28-212ENST00000544750 CHRNA5P30532 468 aa17.68■□□□□ 0.42
USP28-212ENST00000544750 MTHFSP49914 203 aa17.68■□□□□ 0.42
USP28-212ENST00000544750 COL13A1Q5TAT6 717 aaPredicted RBP17.68■□□□□ 0.42
USP28-212ENST00000544750 INTS5Q6P9B9 1019 aaKnown RBP17.68■□□□□ 0.42
USP28-212ENST00000544750 C16orf71Q8IYS4 520 aaPredicted RBP17.68■□□□□ 0.42
USP28-212ENST00000544750 RRAGCQ9HB90 399 aa17.67■□□□□ 0.42
USP28-212ENST00000544750 TIAM2Q8IVF5 1701 aa17.67■□□□□ 0.42
USP28-212ENST00000544750 DICER1Q9UPY3 1922 aaKnown RBP17.65■□□□□ 0.42
USP28-212ENST00000544750 ZC3H4Q9UPT8 1303 aaKnown RBP17.65■□□□□ 0.42
USP28-212ENST00000544750 MRC1P22897 1456 aa17.64■□□□□ 0.41
USP28-212ENST00000544750 PRELPP51888 382 aa17.64■□□□□ 0.41
USP28-212ENST00000544750 C1orf141Q5JVX7 400 aa17.64■□□□□ 0.41
USP28-212ENST00000544750 SOS1Q07889 1333 aaPredicted RBP17.64■□□□□ 0.41
USP28-212ENST00000544750 UBR2Q8IWV8 1755 aa17.63■□□□□ 0.41
USP28-212ENST00000544750 DNAJC10Q8IXB1 793 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms