RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 PDE3AQ14432 1141 aa39.07■■■■□ 3.84
CCM2-219ENST00000544363 SLC52A2Q9HAB3 445 aa39.07■■■■□ 3.84
CCM2-219ENST00000544363 NKX1-1Q15270 411 aaPredicted RBP39.06■■■■□ 3.84
CCM2-219ENST00000544363 FNBP4Q8N3X1 1017 aaPredicted RBP39.06■■■■□ 3.84
CCM2-219ENST00000544363 PPP4R2Q9NY27 417 aa39.06■■■■□ 3.84
CCM2-219ENST00000544363 WNK3Q9BYP7 1800 aa39.05■■■■□ 3.84
CCM2-219ENST00000544363 EXOC6Q8TAG9 804 aa39.05■■■■□ 3.84
CCM2-219ENST00000544363 MRC1P22897 1456 aa39.05■■■■□ 3.84
CCM2-219ENST00000544363 DDX54Q8TDD1 881 aaKnown RBP39.04■■■■□ 3.84
CCM2-219ENST00000544363 CDCA7Q9BWT1 371 aaPredicted RBP39.04■■■■□ 3.84
CCM2-219ENST00000544363 SOS1Q07889 1333 aaPredicted RBP39.04■■■■□ 3.84
CCM2-219ENST00000544363 MRPL50Q8N5N7 158 aaKnown RBP39.03■■■■□ 3.84
CCM2-219ENST00000544363 CRBNQ96SW2 442 aa39.03■■■■□ 3.84
CCM2-219ENST00000544363 KIF16BQ96L93 1317 aa39.03■■■■□ 3.84
CCM2-219ENST00000544363 BCL9LQ86UU0 1499 aa39.03■■■■□ 3.84
CCM2-219ENST00000544363 ZKSCAN2Q63HK3 967 aa39.03■■■■□ 3.84
CCM2-219ENST00000544363 EIF4A1P60842 406 aaKnown RBP39.01■■■■□ 3.84
CCM2-219ENST00000544363 NOB1Q9ULX3 412 aaKnown RBP39■■■■□ 3.83
CCM2-219ENST00000544363 NFATC2IPQ8NCF5 419 aa39■■■■□ 3.83
CCM2-219ENST00000544363 CCDC9Q9Y3X0 531 aaKnown RBP39■■■■□ 3.83
CCM2-219ENST00000544363 KCNQ3O43525 872 aa38.99■■■■□ 3.83
CCM2-219ENST00000544363 IPO8O15397 1037 aaKnown RBP38.98■■■■□ 3.83
CCM2-219ENST00000544363 VPS72Q15906 364 aa38.98■■■■□ 3.83
CCM2-219ENST00000544363 EXOC5O00471 708 aa38.97■■■■□ 3.83
CCM2-219ENST00000544363 TCERG1O14776 1098 aaKnown RBP38.97■■■■□ 3.83
CCM2-219ENST00000544363 MEX3CQ5U5Q3 659 aaKnown RBP38.97■■■■□ 3.83
CCM2-219ENST00000544363 ERVV-2B6SEH9 535 aa38.96■■■■□ 3.83
CCM2-219ENST00000544363 CABP4P57796 275 aa38.96■■■■□ 3.83
CCM2-219ENST00000544363 BARGINQ6ZT62 677 aa38.96■■■■□ 3.83
CCM2-219ENST00000544363 MS4A1P11836 297 aa38.95■■■■□ 3.83
CCM2-219ENST00000544363 ATF7IPQ6VMQ6 1270 aa38.95■■■■□ 3.83
CCM2-219ENST00000544363 PANK1Q8TE04 598 aa38.94■■■■□ 3.82
CCM2-219ENST00000544363 USP21Q9UK80 565 aa38.94■■■■□ 3.82
CCM2-219ENST00000544363 TNS2Q63HR2 1409 aa38.93■■■■□ 3.82
CCM2-219ENST00000544363 TNNQ9UQP3 1299 aa38.93■■■■□ 3.82
CCM2-219ENST00000544363 TNKS1BP1Q9C0C2 1729 aaKnown RBP38.93■■■■□ 3.82
CCM2-219ENST00000544363 HOXB7P09629 217 aa38.92■■■■□ 3.82
CCM2-219ENST00000544363 TRIM27P14373 513 aa38.92■■■■□ 3.82
CCM2-219ENST00000544363 ZNF790Q6PG37 636 aa38.91■■■■□ 3.82
CCM2-219ENST00000544363 ARHGAP45Q92619 1136 aa38.91■■■■□ 3.82
CCM2-219ENST00000544363 DZIP1LQ8IYY4 767 aaKnown RBP38.9■■■■□ 3.82
CCM2-219ENST00000544363 HEG1Q9ULI3 1381 aa38.9■■■■□ 3.82
CCM2-219ENST00000544363 RLBP1P12271 317 aa38.89■■■■□ 3.82
CCM2-219ENST00000544363 CCDC30Q5VVM6 783 aa38.89■■■■□ 3.82
CCM2-219ENST00000544363 CLUAP1Q96AJ1 413 aa38.89■■■■□ 3.82
CCM2-219ENST00000544363 SLC39A6Q13433 755 aa38.88■■■■□ 3.81
CCM2-219ENST00000544363 FTSJ3Q8IY81 847 aaKnown RBP38.88■■■■□ 3.81
CCM2-219ENST00000544363 DDB1Q16531 1140 aa38.87■■■■□ 3.81
CCM2-219ENST00000544363 COG6Q9Y2V7 657 aa38.86■■■■□ 3.81
CCM2-219ENST00000544363 CHMP4AQ9BY43 222 aa38.85■■■■□ 3.81
CCM2-219ENST00000544363 SLC4A2P04920 1241 aa38.85■■■■□ 3.81
CCM2-219ENST00000544363 STK31Q9BXU1 1019 aa38.85■■■■□ 3.81
CCM2-219ENST00000544363 TOGARAM1Q9Y4F4 1720 aa38.84■■■■□ 3.81
CCM2-219ENST00000544363 GIGYF1O75420 1035 aaPredicted RBP38.83■■■■□ 3.81
CCM2-219ENST00000544363 HDGFL1Q5TGJ6 251 aa38.83■■■■□ 3.81
CCM2-219ENST00000544363 B4GALNT3Q6L9W6 998 aa38.82■■■■□ 3.81
CCM2-219ENST00000544363 TTC5Q8N0Z6 440 aa38.82■■■■□ 3.81
CCM2-219ENST00000544363 AFF2P51816 1311 aa38.82■■■■□ 3.81
CCM2-219ENST00000544363 FAM98CQ17RN3 349 aaKnown RBP38.8■■■■□ 3.8
CCM2-219ENST00000544363 NECTIN2Q92692 538 aa38.8■■■■□ 3.8
CCM2-219ENST00000544363 API5Q9BZZ5 524 aaKnown RBP38.8■■■■□ 3.8
CCM2-219ENST00000544363 CCDC136Q96JN2 1154 aa38.79■■■■□ 3.8
CCM2-219ENST00000544363 PTPRCP08575 1304 aa38.78■■■■□ 3.8
CCM2-219ENST00000544363 MVPQ14764 893 aaKnown RBP38.78■■■■□ 3.8
CCM2-219ENST00000544363 EIF2S2P20042 333 aaKnown RBP38.78■■■■□ 3.8
CCM2-219ENST00000544363 CACNA1FO60840 1977 aa38.77■■■■□ 3.8
CCM2-219ENST00000544363 ZNF496Q96IT1 587 aaPredicted RBP38.77■■■■□ 3.8
CCM2-219ENST00000544363 TMOD3Q9NYL9 352 aa38.77■■■■□ 3.8
CCM2-219ENST00000544363 FMNL2Q96PY5 1086 aa38.76■■■■□ 3.8
CCM2-219ENST00000544363 TMEM57Q8N5G2 664 aa38.74■■■■□ 3.79
CCM2-219ENST00000544363 PAPPAQ13219 1627 aa38.73■■■■□ 3.79
CCM2-219ENST00000544363 ABCC4O15439 1325 aa38.73■■■■□ 3.79
CCM2-219ENST00000544363 G2E3Q7L622 706 aa38.73■■■■□ 3.79
CCM2-219ENST00000544363 MARCH10Q8NA82 808 aaPredicted RBP38.73■■■■□ 3.79
CCM2-219ENST00000544363 AAMPQ13685 434 aa38.72■■■■□ 3.79
CCM2-219ENST00000544363 PRAMEF22A3QJZ6 481 aa38.71■■■■□ 3.79
CCM2-219ENST00000544363 GJD4Q96KN9 370 aaPredicted RBP38.71■■■■□ 3.79
CCM2-219ENST00000544363 ATRNO75882 1429 aa38.71■■■■□ 3.79
CCM2-219ENST00000544363 ITGB4P16144 1822 aa38.71■■■■□ 3.79
CCM2-219ENST00000544363 ITPRIPQ8IWB1 547 aa38.71■■■■□ 3.79
CCM2-219ENST00000544363 TRPC5Q9UL62 973 aaPredicted RBP38.71■■■■□ 3.79
CCM2-219ENST00000544363 SNRPA1P09661 255 aaKnown RBP38.7■■■■□ 3.79
CCM2-219ENST00000544363 PIGBQ92521 554 aa38.7■■■■□ 3.79
CCM2-219ENST00000544363 DDX19BQ9UMR2 479 aa38.7■■■■□ 3.79
CCM2-219ENST00000544363 RGS12O14924 1447 aa38.7■■■■□ 3.79
CCM2-219ENST00000544363 UBR2Q8IWV8 1755 aa38.69■■■■□ 3.78
CCM2-219ENST00000544363 FLIIQ13045 1269 aa38.68■■■■□ 3.78
CCM2-219ENST00000544363 CHPF2Q9P2E5 772 aa38.68■■■■□ 3.78
CCM2-219ENST00000544363 GLI3P10071 1580 aa38.68■■■■□ 3.78
CCM2-219ENST00000544363 C5P01031 1676 aa38.67■■■■□ 3.78
CCM2-219ENST00000544363 DBF4Q9UBU7 674 aaPredicted RBP38.67■■■■□ 3.78
CCM2-219ENST00000544363 BCL9O00512 1426 aa38.66■■■■□ 3.78
CCM2-219ENST00000544363 KCPQ6ZWJ8 1503 aa38.66■■■■□ 3.78
CCM2-219ENST00000544363 THSD7AQ9UPZ6 1657 aa38.65■■■■□ 3.78
CCM2-219ENST00000544363 DOT1LQ8TEK3 1739 aa38.64■■■■□ 3.78
CCM2-219ENST00000544363 A0A0G2JS52 829 aa38.62■■■■□ 3.77
CCM2-219ENST00000544363 PRIM1P49642 420 aaKnown RBP38.62■■■■□ 3.77
CCM2-219ENST00000544363 MYT1Q01538 1121 aa38.62■■■■□ 3.77
CCM2-219ENST00000544363 FKBP5Q13451 457 aaPredicted RBP38.6■■■■□ 3.77
CCM2-219ENST00000544363 PHAXQ9H814 394 aaKnown RBP38.6■■■■□ 3.77
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms