RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 SOS1Q07889 1333 aaPredicted RBP18.15■□□□□ 0.5
VPS33A-209ENST00000544349 KDM3BQ7LBC6 1761 aa18.14■□□□□ 0.5
VPS33A-209ENST00000544349 API5Q9BZZ5 524 aaKnown RBP18.14■□□□□ 0.5
VPS33A-209ENST00000544349 PCDHB15Q9Y5E8 787 aa18.14■□□□□ 0.49
VPS33A-209ENST00000544349 ABCC4O15439 1325 aa18.13■□□□□ 0.49
VPS33A-209ENST00000544349 TOM1L2Q6ZVM7 507 aa18.13■□□□□ 0.49
VPS33A-209ENST00000544349 CERKQ8TCT0 537 aa18.13■□□□□ 0.49
VPS33A-209ENST00000544349 PKD1L3Q7Z443 1732 aa18.13■□□□□ 0.49
VPS33A-209ENST00000544349 COL22A1Q8NFW1 1626 aaPredicted RBP18.12■□□□□ 0.49
VPS33A-209ENST00000544349 BTBD11A6QL63 1104 aa18.12■□□□□ 0.49
VPS33A-209ENST00000544349 PHKG2P15735 406 aa18.12■□□□□ 0.49
VPS33A-209ENST00000544349 SLC4A2P04920 1241 aa18.11■□□□□ 0.49
VPS33A-209ENST00000544349 SIPA1L3O60292 1781 aaPredicted RBP18.11■□□□□ 0.49
VPS33A-209ENST00000544349 EIF4A1P60842 406 aaKnown RBP18.11■□□□□ 0.49
VPS33A-209ENST00000544349 IFNL2Q8IZJ0 200 aa18.11■□□□□ 0.49
VPS33A-209ENST00000544349 PTPRCP08575 1304 aa18.11■□□□□ 0.49
VPS33A-209ENST00000544349 SCN11AQ9UI33 1791 aa18.11■□□□□ 0.49
VPS33A-209ENST00000544349 CARD10Q9BWT7 1032 aa18.1■□□□□ 0.49
VPS33A-209ENST00000544349 ZBTB40Q9NUA8 1239 aa18.1■□□□□ 0.49
VPS33A-209ENST00000544349 TOM1O60784 492 aa18.1■□□□□ 0.49
VPS33A-209ENST00000544349 EVA1CP58658 441 aa18.1■□□□□ 0.49
VPS33A-209ENST00000544349 CCDC30Q5VVM6 783 aa18.1■□□□□ 0.49
VPS33A-209ENST00000544349 STRN4Q9NRL3 753 aa18.1■□□□□ 0.49
VPS33A-209ENST00000544349 PARP4Q9UKK3 1724 aaKnown RBP18.09■□□□□ 0.49
VPS33A-209ENST00000544349 KCNQ3O43525 872 aa18.09■□□□□ 0.49
VPS33A-209ENST00000544349 PHLPP1O60346 1717 aa18.09■□□□□ 0.49
VPS33A-209ENST00000544349 RGS12O14924 1447 aa18.09■□□□□ 0.49
VPS33A-209ENST00000544349 KDM6AO15550 1401 aaPredicted RBP18.09■□□□□ 0.49
VPS33A-209ENST00000544349 CACNA1FO60840 1977 aa18.09■□□□□ 0.49
VPS33A-209ENST00000544349 CYP27B1O15528 508 aa18.08■□□□□ 0.49
VPS33A-209ENST00000544349 LARP1Q6PKG0 1096 aaKnown RBP18.08■□□□□ 0.49
VPS33A-209ENST00000544349 STK31Q9BXU1 1019 aa18.08■□□□□ 0.49
VPS33A-209ENST00000544349 ZBTB7BO15156 539 aaPredicted RBP18.08■□□□□ 0.48
VPS33A-209ENST00000544349 DEKP35659 375 aaKnown RBP18.08■□□□□ 0.48
VPS33A-209ENST00000544349 CHMP4BQ9H444 224 aaKnown RBP18.08■□□□□ 0.48
VPS33A-209ENST00000544349 COL16A1Q07092 1604 aaPredicted RBP18.08■□□□□ 0.48
VPS33A-209ENST00000544349 COL14A1Q05707 1796 aaKnown RBP18.07■□□□□ 0.48
VPS33A-209ENST00000544349 HOXB7P09629 217 aa18.07■□□□□ 0.48
VPS33A-209ENST00000544349 G2E3Q7L622 706 aa18.07■□□□□ 0.48
VPS33A-209ENST00000544349 DDRGK1Q96HY6 314 aa18.07■□□□□ 0.48
VPS33A-209ENST00000544349 RWDD1Q9H446 243 aaPredicted RBP18.07■□□□□ 0.48
VPS33A-209ENST00000544349 SLC4A3P48751 1232 aa18.06■□□□□ 0.48
VPS33A-209ENST00000544349 DCAF5Q96JK2 942 aa18.06■□□□□ 0.48
VPS33A-209ENST00000544349 SLC52A2Q9HAB3 445 aa18.06■□□□□ 0.48
VPS33A-209ENST00000544349 BTG4Q9NY30 223 aa18.06■□□□□ 0.48
VPS33A-209ENST00000544349 HSP90AB1P08238 724 aaKnown RBP18.05■□□□□ 0.48
VPS33A-209ENST00000544349 IL2RBP14784 551 aa18.05■□□□□ 0.48
VPS33A-209ENST00000544349 INTS3Q68E01 1043 aaKnown RBP18.05■□□□□ 0.48
VPS33A-209ENST00000544349 NECTIN2Q92692 538 aa18.05■□□□□ 0.48
VPS33A-209ENST00000544349 PIP4K2BP78356 416 aa18.05■□□□□ 0.48
VPS33A-209ENST00000544349 HDGFL1Q5TGJ6 251 aa18.05■□□□□ 0.48
VPS33A-209ENST00000544349 ZCRB1Q8TBF4 217 aaKnown RBP18.05■□□□□ 0.48
VPS33A-209ENST00000544349 HEG1Q9ULI3 1381 aa18.04■□□□□ 0.48
VPS33A-209ENST00000544349 CHMP4AQ9BY43 222 aa18.04■□□□□ 0.48
VPS33A-209ENST00000544349 PCDH11XQ9BZA7 1347 aa18.03■□□□□ 0.48
VPS33A-209ENST00000544349 PCDH11YQ9BZA8 1340 aa18.03■□□□□ 0.48
VPS33A-209ENST00000544349 HDAC1Q13547 482 aaPredicted RBP18.03■□□□□ 0.48
VPS33A-209ENST00000544349 NFATC2IPQ8NCF5 419 aa18.03■□□□□ 0.48
VPS33A-209ENST00000544349 MRC1P22897 1456 aa18.03■□□□□ 0.48
VPS33A-209ENST00000544349 FLIIQ13045 1269 aa18.02■□□□□ 0.48
VPS33A-209ENST00000544349 EIF2S2P20042 333 aaKnown RBP18.02■□□□□ 0.47
VPS33A-209ENST00000544349 GIGYF1O75420 1035 aaPredicted RBP18.01■□□□□ 0.47
VPS33A-209ENST00000544349 RTL5Q5HYW3 569 aaPredicted RBP18.01■□□□□ 0.47
VPS33A-209ENST00000544349 ZNF790Q6PG37 636 aa18.01■□□□□ 0.47
VPS33A-209ENST00000544349 PDZRN3Q9UPQ7 1066 aa18.01■□□□□ 0.47
VPS33A-209ENST00000544349 SHANK3Q9BYB0 1731 aa18■□□□□ 0.47
VPS33A-209ENST00000544349 UBAP1LF5GYI3 381 aa18■□□□□ 0.47
VPS33A-209ENST00000544349 SEC24BO95487 1268 aa18■□□□□ 0.47
VPS33A-209ENST00000544349 F6X3S4 739 aa17.99■□□□□ 0.47
VPS33A-209ENST00000544349 SLC39A6Q13433 755 aa17.99■□□□□ 0.47
VPS33A-209ENST00000544349 USP35Q9P2H5 1018 aa17.99■□□□□ 0.47
VPS33A-209ENST00000544349 FKBP5Q13451 457 aaPredicted RBP17.99■□□□□ 0.47
VPS33A-209ENST00000544349 CABP4P57796 275 aa17.98■□□□□ 0.47
VPS33A-209ENST00000544349 NKX1-1Q15270 411 aaPredicted RBP17.98■□□□□ 0.47
VPS33A-209ENST00000544349 CCT4P50991 539 aaKnown RBP17.98■□□□□ 0.47
VPS33A-209ENST00000544349 C1orf115Q9H7X2 142 aa17.98■□□□□ 0.47
VPS33A-209ENST00000544349 CHPF2Q9P2E5 772 aa17.98■□□□□ 0.47
VPS33A-209ENST00000544349 SLC4A10Q6U841 1118 aa17.97■□□□□ 0.47
VPS33A-209ENST00000544349 PHAXQ9H814 394 aaKnown RBP17.97■□□□□ 0.47
VPS33A-209ENST00000544349 PLCH1Q4KWH8 1693 aa17.97■□□□□ 0.47
VPS33A-209ENST00000544349 ADAMTS2O95450 1211 aa17.96■□□□□ 0.47
VPS33A-209ENST00000544349 PRAMEF22A3QJZ6 481 aa17.96■□□□□ 0.47
VPS33A-209ENST00000544349 SMC5Q8IY18 1101 aa17.96■□□□□ 0.47
VPS33A-209ENST00000544349 DDX54Q8TDD1 881 aaKnown RBP17.96■□□□□ 0.47
VPS33A-209ENST00000544349 BCL11AQ9H165 835 aa17.96■□□□□ 0.47
VPS33A-209ENST00000544349 ERVV-2B6SEH9 535 aa17.95■□□□□ 0.46
VPS33A-209ENST00000544349 DBF4Q9UBU7 674 aaPredicted RBP17.95■□□□□ 0.46
VPS33A-209ENST00000544349 DISP2A7MBM2 1401 aa17.95■□□□□ 0.46
VPS33A-209ENST00000544349 TTC5Q8N0Z6 440 aa17.94■□□□□ 0.46
VPS33A-209ENST00000544349 ZNF496Q96IT1 587 aaPredicted RBP17.94■□□□□ 0.46
VPS33A-209ENST00000544349 PXDNLA1KZ92 1463 aa17.93■□□□□ 0.46
VPS33A-209ENST00000544349 MEIS3Q99687 375 aa17.93■□□□□ 0.46
VPS33A-209ENST00000544349 N4BP2Q86UW6 1770 aaPredicted RBP17.93■□□□□ 0.46
VPS33A-209ENST00000544349 C5P01031 1676 aa17.93■□□□□ 0.46
VPS33A-209ENST00000544349 NUTM2BA6NNL0 878 aaPredicted RBP17.93■□□□□ 0.46
VPS33A-209ENST00000544349 NUTM2EB1AL46 878 aaPredicted RBP17.93■□□□□ 0.46
VPS33A-209ENST00000544349 NUTM2AQ8IVF1 878 aaPredicted RBP17.93■□□□□ 0.46
VPS33A-209ENST00000544349 SIRT2Q8IXJ6 389 aa17.93■□□□□ 0.46
VPS33A-209ENST00000544349 NRAPQ86VF7 1730 aa17.93■□□□□ 0.46
VPS33A-209ENST00000544349 ANXA1P04083 346 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms