RNA–Protein interactions for RNA: ENST00000543428.5

PSME3-204, Transcript of proteasome activator subunit 3, human

TSL 2

Gene PSME3, Length 956 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSME3-204	ENST00000543428	MAP3K5	Q99683	1374 aa		29.02	■■■□□ 2.24
PSME3-204	ENST00000543428	DIAPH1	O60610	1272 aa	Known RBP	29.02	■■■□□ 2.24
PSME3-204	ENST00000543428	YY1	P25490	414 aa		29.02	■■■□□ 2.24
PSME3-204	ENST00000543428	MSL1	Q68DK7	614 aa		29.02	■■■□□ 2.24
PSME3-204	ENST00000543428	PHF14	O94880	888 aa		29.01	■■■□□ 2.23
PSME3-204	ENST00000543428	KDM6A	O15550	1401 aa	Predicted RBP	29.01	■■■□□ 2.23
PSME3-204	ENST00000543428	HMOX1	P09601	288 aa		29	■■■□□ 2.23
PSME3-204	ENST00000543428	LINC00116	Q8NCU8	138 aa		29	■■■□□ 2.23
PSME3-204	ENST00000543428	RBM42	Q9BTD8	480 aa	Known RBP	29	■■■□□ 2.23
PSME3-204	ENST00000543428	ITPK1	Q13572	414 aa		28.98	■■■□□ 2.23
PSME3-204	ENST00000543428	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	28.97	■■■□□ 2.23
PSME3-204	ENST00000543428	UBR3	Q6ZT12	1888 aa		28.96	■■■□□ 2.23
PSME3-204	ENST00000543428	GNPAT	O15228	680 aa		28.96	■■■□□ 2.23
PSME3-204	ENST00000543428	SSFA2	P28290	1259 aa		28.95	■■■□□ 2.22
PSME3-204	ENST00000543428	AKAP4	Q5JQC9	854 aa		28.95	■■■□□ 2.22
PSME3-204	ENST00000543428	SMIM5	Q71RC9	77 aa		28.94	■■■□□ 2.22
PSME3-204	ENST00000543428	AMIGO3	Q86WK7	504 aa		28.94	■■■□□ 2.22
PSME3-204	ENST00000543428	NFATC2IP	Q8NCF5	419 aa		28.94	■■■□□ 2.22
PSME3-204	ENST00000543428	U2SURP	O15042	1029 aa	Known RBP	28.92	■■■□□ 2.22
PSME3-204	ENST00000543428	GPR162	Q16538	588 aa		28.92	■■■□□ 2.22
PSME3-204	ENST00000543428	SCN11A	Q9UI33	1791 aa		28.9	■■■□□ 2.22
PSME3-204	ENST00000543428	PTCD1	O75127	700 aa	Known RBP	28.9	■■■□□ 2.22
PSME3-204	ENST00000543428	PELP1	Q8IZL8	1130 aa	Known RBP	28.9	■■■□□ 2.22
PSME3-204	ENST00000543428	CFAP53	Q96M91	514 aa		28.89	■■■□□ 2.22
PSME3-204	ENST00000543428	SLC4A9	Q96Q91	983 aa		28.89	■■■□□ 2.22
PSME3-204	ENST00000543428	ZNF831	Q5JPB2	1677 aa		28.89	■■■□□ 2.21
PSME3-204	ENST00000543428	NLGN2	Q8NFZ4	835 aa		28.88	■■■□□ 2.21
PSME3-204	ENST00000543428	RTCB	Q9Y3I0	505 aa	Known RBP	28.88	■■■□□ 2.21
PSME3-204	ENST00000543428	COL3A1	P02461	1466 aa	Predicted RBP	28.87	■■■□□ 2.21
PSME3-204	ENST00000543428	MTHFSD	Q2M296	383 aa	Known RBP	28.87	■■■□□ 2.21
PSME3-204	ENST00000543428	LGR6	Q9HBX8	967 aa		28.86	■■■□□ 2.21
PSME3-204	ENST00000543428	RNMT	O43148	476 aa	Known RBP	28.85	■■■□□ 2.21
PSME3-204	ENST00000543428	RC3H1	Q5TC82	1133 aa	Known RBP	28.85	■■■□□ 2.21
PSME3-204	ENST00000543428	SLC52A2	Q9HAB3	445 aa		28.85	■■■□□ 2.21
PSME3-204	ENST00000543428	TRAPPC3L	Q5T215	181 aa		28.84	■■■□□ 2.21
PSME3-204	ENST00000543428	CNTNAP4	Q9C0A0	1308 aa		28.83	■■■□□ 2.21
PSME3-204	ENST00000543428	COL5A3	P25940	1745 aa	Predicted RBP	28.83	■■■□□ 2.21
PSME3-204	ENST00000543428	CD2AP	Q9Y5K6	639 aa		28.82	■■■□□ 2.2
PSME3-204	ENST00000543428	VIRMA	Q69YN4	1812 aa	Known RBP	28.8	■■■□□ 2.2
PSME3-204	ENST00000543428	ADRA2B	P18089	450 aa		28.8	■■■□□ 2.2
PSME3-204	ENST00000543428	NUDC	Q9Y266	331 aa		28.8	■■■□□ 2.2
PSME3-204	ENST00000543428	CHD4	Q14839	1912 aa		28.8	■■■□□ 2.2
PSME3-204	ENST00000543428	RPS6KA4	O75676	772 aa		28.79	■■■□□ 2.2
PSME3-204	ENST00000543428	PPP2R1A	P30153	589 aa		28.78	■■■□□ 2.2
PSME3-204	ENST00000543428	RFC4	P35249	363 aa		28.78	■■■□□ 2.2
PSME3-204	ENST00000543428	GAS2L2	Q8NHY3	880 aa		28.78	■■■□□ 2.2
PSME3-204	ENST00000543428	MRC1	P22897	1456 aa		28.78	■■■□□ 2.2
PSME3-204	ENST00000543428	CRKL	P46109	303 aa	Known RBP	28.77	■■■□□ 2.2
PSME3-204	ENST00000543428	ARHGEF1	Q92888	912 aa	Known RBP	28.77	■■■□□ 2.2
PSME3-204	ENST00000543428	SLC39A6	Q13433	755 aa		28.76	■■■□□ 2.19
PSME3-204	ENST00000543428	MMP10	P09238	476 aa		28.75	■■■□□ 2.19
PSME3-204	ENST00000543428	NLGN1	Q8N2Q7	840 aa		28.75	■■■□□ 2.19
PSME3-204	ENST00000543428	MYH14	Q7Z406	1995 aa	Known RBP	28.75	■■■□□ 2.19
PSME3-204	ENST00000543428	GNAT3	A8MTJ3	354 aa		28.74	■■■□□ 2.19
PSME3-204	ENST00000543428	TJP1	Q07157	1748 aa		28.74	■■■□□ 2.19
PSME3-204	ENST00000543428	UTRN	P46939	3433 aa		28.74	■■■□□ 2.19
PSME3-204	ENST00000543428	GRIN3B	O60391	1043 aa		28.73	■■■□□ 2.19
PSME3-204	ENST00000543428	PRKAR2B	P31323	418 aa		28.73	■■■□□ 2.19
PSME3-204	ENST00000543428	ADAMTS7	Q9UKP4	1686 aa		28.73	■■■□□ 2.19
PSME3-204	ENST00000543428	U2AF1L5	P0DN76	240 aa	Predicted RBP	28.72	■■■□□ 2.19
PSME3-204	ENST00000543428	U2AF1	Q01081	240 aa	Known RBP eCLIP	28.72	■■■□□ 2.19
PSME3-204	ENST00000543428	TEF	Q10587	303 aa		28.72	■■■□□ 2.19
PSME3-204	ENST00000543428	DNAJC10	Q8IXB1	793 aa		28.72	■■■□□ 2.19
PSME3-204	ENST00000543428	CIC	Q96RK0	1608 aa	Predicted RBP	28.71	■■■□□ 2.19
PSME3-204	ENST00000543428	YBX3	P16989	372 aa	Known RBP eCLIP	28.7	■■■□□ 2.18	1e-6	■■□□□ 14.1
PSME3-204	ENST00000543428	TTC5	Q8N0Z6	440 aa		28.7	■■■□□ 2.18
PSME3-204	ENST00000543428	RSPH6A	Q9H0K4	717 aa		28.7	■■■□□ 2.18
PSME3-204	ENST00000543428	GYS1	P13807	737 aa		28.69	■■■□□ 2.18
PSME3-204	ENST00000543428	CCDC87	Q9NVE4	849 aa		28.69	■■■□□ 2.18
PSME3-204	ENST00000543428	PHACTR3	Q96KR7	559 aa		28.68	■■■□□ 2.18
PSME3-204	ENST00000543428	C4A	P0C0L4	1744 aa		28.67	■■■□□ 2.18
PSME3-204	ENST00000543428	INTS5	Q6P9B9	1019 aa	Known RBP	28.67	■■■□□ 2.18
PSME3-204	ENST00000543428	ZNF784	Q8NCA9	323 aa	Predicted RBP	28.67	■■■□□ 2.18
PSME3-204	ENST00000543428	IL17RE	Q8NFR9	667 aa		28.67	■■■□□ 2.18
PSME3-204	ENST00000543428	GOLGB1	Q14789	3259 aa	Known RBP	28.67	■■■□□ 2.18
PSME3-204	ENST00000543428	KCP	Q6ZWJ8	1503 aa		28.67	■■■□□ 2.18
PSME3-204	ENST00000543428	CYP19A1	P11511	503 aa	Predicted RBP	28.65	■■■□□ 2.18
PSME3-204	ENST00000543428	PARP3	Q9Y6F1	533 aa		28.65	■■■□□ 2.18
PSME3-204	ENST00000543428	FCHSD2	O94868	740 aa		28.64	■■■□□ 2.18
PSME3-204	ENST00000543428	VSIG10	Q8N0Z9	540 aa		28.64	■■■□□ 2.18
PSME3-204	ENST00000543428	SRP68	Q9UHB9	627 aa	Known RBP	28.64	■■■□□ 2.18
PSME3-204	ENST00000543428	WWC3	Q9ULE0	1092 aa		28.64	■■■□□ 2.18
PSME3-204	ENST00000543428	USP42	Q9H9J4	1324 aa	Known RBP	28.63	■■■□□ 2.17
PSME3-204	ENST00000543428	ZPR1	O75312	459 aa		28.62	■■■□□ 2.17
PSME3-204	ENST00000543428	UBR2	Q8IWV8	1755 aa		28.61	■■■□□ 2.17
PSME3-204	ENST00000543428	STARD3NL	O95772	234 aa		28.6	■■■□□ 2.17
PSME3-204	ENST00000543428	ZNF790	Q6PG37	636 aa		28.6	■■■□□ 2.17
PSME3-204	ENST00000543428	RTF1	Q92541	710 aa	Known RBP	28.6	■■■□□ 2.17
PSME3-204	ENST00000543428	SOS1	Q07889	1333 aa	Predicted RBP	28.6	■■■□□ 2.17
PSME3-204	ENST00000543428	FKBP8	Q14318	412 aa		28.59	■■■□□ 2.17
PSME3-204	ENST00000543428	SIPA1L3	O60292	1781 aa	Predicted RBP	28.58	■■■□□ 2.17
PSME3-204	ENST00000543428	NEFM	P07197	916 aa		28.58	■■■□□ 2.17
PSME3-204	ENST00000543428	ZNF496	Q96IT1	587 aa	Predicted RBP	28.58	■■■□□ 2.17
PSME3-204	ENST00000543428	ZBTB1	Q9Y2K1	713 aa		28.58	■■■□□ 2.17
PSME3-204	ENST00000543428	CEMIP	Q8WUJ3	1361 aa		28.58	■■■□□ 2.17
PSME3-204	ENST00000543428	TGFB2	P61812	414 aa		28.57	■■■□□ 2.16
PSME3-204	ENST00000543428	KIF13B	Q9NQT8	1826 aa		28.57	■■■□□ 2.16
PSME3-204	ENST00000543428	BTBD11	A6QL63	1104 aa		28.56	■■■□□ 2.16
PSME3-204	ENST00000543428	CANX	P27824	592 aa	Known RBP	28.56	■■■□□ 2.16
PSME3-204	ENST00000543428	COL15A1	P39059	1388 aa		28.56	■■■□□ 2.16

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms