RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 HDGFL1Q5TGJ6 251 aa18.27■□□□□ 0.52
CLIP1-216ENST00000541410 CHMP4BQ9H444 224 aaKnown RBP18.27■□□□□ 0.52
CLIP1-216ENST00000541410 PHAXQ9H814 394 aaKnown RBP18.26■□□□□ 0.51
CLIP1-216ENST00000541410 LMO7Q8WWI1 1683 aa18.26■□□□□ 0.51
CLIP1-216ENST00000541410 FAM208AQ9UK61 1670 aaKnown RBP18.26■□□□□ 0.51
CLIP1-216ENST00000541410 ANXA1P04083 346 aa18.26■□□□□ 0.51
CLIP1-216ENST00000541410 EIF4A1P60842 406 aaKnown RBP18.26■□□□□ 0.51
CLIP1-216ENST00000541410 NUCB1Q02818 461 aa18.26■□□□□ 0.51
CLIP1-216ENST00000541410 RAPGEF4Q8WZA2 1011 aa18.26■□□□□ 0.51
CLIP1-216ENST00000541410 SLC4A3P48751 1232 aa18.25■□□□□ 0.51
CLIP1-216ENST00000541410 CHD1LQ86WJ1 897 aa18.25■□□□□ 0.51
CLIP1-216ENST00000541410 NCAPD2Q15021 1401 aa18.24■□□□□ 0.51
CLIP1-216ENST00000541410 APBB1O00213 710 aa18.24■□□□□ 0.51
CLIP1-216ENST00000541410 COL18A1P39060 1754 aa18.24■□□□□ 0.51
CLIP1-216ENST00000541410 PRAMEF22A3QJZ6 481 aa18.24■□□□□ 0.51
CLIP1-216ENST00000541410 CAMTA1Q9Y6Y1 1673 aa18.22■□□□□ 0.51
CLIP1-216ENST00000541410 BABAM1Q9NWV8 329 aa18.22■□□□□ 0.51
CLIP1-216ENST00000541410 CHPF2Q9P2E5 772 aa18.22■□□□□ 0.51
CLIP1-216ENST00000541410 MEGF6O75095 1541 aa18.22■□□□□ 0.51
CLIP1-216ENST00000541410 KDM3BQ7LBC6 1761 aa18.21■□□□□ 0.51
CLIP1-216ENST00000541410 SLC39A6Q13433 755 aa18.21■□□□□ 0.51
CLIP1-216ENST00000541410 CEP85Q6P2H3 762 aa18.21■□□□□ 0.51
CLIP1-216ENST00000541410 PRDM11Q9NQV5 511 aa18.21■□□□□ 0.51
CLIP1-216ENST00000541410 CRYBG1Q9Y4K1 1723 aa18.21■□□□□ 0.51
CLIP1-216ENST00000541410 CACNA1FO60840 1977 aa18.21■□□□□ 0.5
CLIP1-216ENST00000541410 ATP10DQ9P241 1426 aa18.2■□□□□ 0.5
CLIP1-216ENST00000541410 TATP17735 454 aaPredicted RBP18.2■□□□□ 0.5
CLIP1-216ENST00000541410 GCC1Q96CN9 775 aa18.2■□□□□ 0.5
CLIP1-216ENST00000541410 CCT4P50991 539 aaKnown RBP18.19■□□□□ 0.5
CLIP1-216ENST00000541410 ANKRD44Q8N8A2 993 aa18.19■□□□□ 0.5
CLIP1-216ENST00000541410 SOS2Q07890 1332 aaPredicted RBP18.18■□□□□ 0.5
CLIP1-216ENST00000541410 NFATC2IPQ8NCF5 419 aa18.18■□□□□ 0.5
CLIP1-216ENST00000541410 C16orf71Q8IYS4 520 aaPredicted RBP18.17■□□□□ 0.5
CLIP1-216ENST00000541410 SMARCA5O60264 1052 aaPredicted RBP18.17■□□□□ 0.5
CLIP1-216ENST00000541410 PHKG2P15735 406 aa18.17■□□□□ 0.5
CLIP1-216ENST00000541410 PROSER3Q2NL68 480 aa18.16■□□□□ 0.5
CLIP1-216ENST00000541410 DCTPP1Q9H773 170 aa18.16■□□□□ 0.5
CLIP1-216ENST00000541410 STRN4Q9NRL3 753 aa18.16■□□□□ 0.5
CLIP1-216ENST00000541410 KDM6AO15550 1401 aaPredicted RBP18.16■□□□□ 0.5
CLIP1-216ENST00000541410 CYP27B1O15528 508 aa18.16■□□□□ 0.5
CLIP1-216ENST00000541410 TOM1L2Q6ZVM7 507 aa18.16■□□□□ 0.5
CLIP1-216ENST00000541410 SPG7Q9UQ90 795 aa18.16■□□□□ 0.5
CLIP1-216ENST00000541410 MFAP1P55081 439 aaKnown RBP18.15■□□□□ 0.5
CLIP1-216ENST00000541410 RPAP2Q8IXW5 612 aaPredicted RBP18.15■□□□□ 0.5
CLIP1-216ENST00000541410 GIGYF1O75420 1035 aaPredicted RBP18.15■□□□□ 0.5
CLIP1-216ENST00000541410 OTUD7AQ8TE49 926 aaPredicted RBP18.15■□□□□ 0.5
CLIP1-216ENST00000541410 PI4KAP2A4QPH2 592 aa18.14■□□□□ 0.49
CLIP1-216ENST00000541410 PI4KAP1Q8N8J0 262 aa18.14■□□□□ 0.49
CLIP1-216ENST00000541410 CPDO75976 1380 aa18.14■□□□□ 0.49
CLIP1-216ENST00000541410 NBR1Q14596 966 aa18.13■□□□□ 0.49
CLIP1-216ENST00000541410 DDRGK1Q96HY6 314 aa18.13■□□□□ 0.49
CLIP1-216ENST00000541410 USP35Q9P2H5 1018 aa18.13■□□□□ 0.49
CLIP1-216ENST00000541410 SOS1Q07889 1333 aaPredicted RBP18.13■□□□□ 0.49
CLIP1-216ENST00000541410 SIPA1L3O60292 1781 aaPredicted RBP18.13■□□□□ 0.49
CLIP1-216ENST00000541410 IFNL2Q8IZJ0 200 aa18.13■□□□□ 0.49
CLIP1-216ENST00000541410 SLC52A2Q9HAB3 445 aa18.13■□□□□ 0.49
CLIP1-216ENST00000541410 SCN11AQ9UI33 1791 aa18.12■□□□□ 0.49
CLIP1-216ENST00000541410 GNAI2P04899 355 aa18.12■□□□□ 0.49
CLIP1-216ENST00000541410 LRRFIP2Q9Y608 721 aaKnown RBP18.12■□□□□ 0.49
CLIP1-216ENST00000541410 PNMA6EA0A0J9YXQ4 647 aa18.12■□□□□ 0.49
CLIP1-216ENST00000541410 USP44Q9H0E7 712 aa18.12■□□□□ 0.49
CLIP1-216ENST00000541410 EXOC6BQ9Y2D4 811 aa18.12■□□□□ 0.49
CLIP1-216ENST00000541410 ZNF790Q6PG37 636 aa18.11■□□□□ 0.49
CLIP1-216ENST00000541410 PIP4K2AP48426 406 aaPredicted RBP18.11■□□□□ 0.49
CLIP1-216ENST00000541410 AIMP1Q12904 312 aaKnown RBP18.11■□□□□ 0.49
CLIP1-216ENST00000541410 HOXB7P09629 217 aa18.1■□□□□ 0.49
CLIP1-216ENST00000541410 UPF2Q9HAU5 1272 aaKnown RBP18.1■□□□□ 0.49
CLIP1-216ENST00000541410 LARP1Q6PKG0 1096 aaKnown RBP18.1■□□□□ 0.49
CLIP1-216ENST00000541410 DBF4Q9UBU7 674 aaPredicted RBP18.1■□□□□ 0.49
CLIP1-216ENST00000541410 DAXXQ9UER7 740 aaPredicted RBP18.1■□□□□ 0.49
CLIP1-216ENST00000541410 WDR17Q8IZU2 1322 aa18.1■□□□□ 0.49
CLIP1-216ENST00000541410 PLEKHM2Q8IWE5 1019 aa18.09■□□□□ 0.49
CLIP1-216ENST00000541410 GNAI3P08754 354 aa18.09■□□□□ 0.49
CLIP1-216ENST00000541410 NBPF7P0C2Y1 421 aaPredicted RBP18.09■□□□□ 0.49
CLIP1-216ENST00000541410 DNAAF4Q8WXU2 420 aa18.09■□□□□ 0.49
CLIP1-216ENST00000541410 ZNF496Q96IT1 587 aaPredicted RBP18.09■□□□□ 0.49
CLIP1-216ENST00000541410 SRCIN1Q9C0H9 1055 aa18.09■□□□□ 0.49
CLIP1-216ENST00000541410 OVOS2A0A0G2JMS6 1433 aa18.08■□□□□ 0.49
CLIP1-216ENST00000541410 UBTFL1P0CB47 393 aaPredicted RBP18.08■□□□□ 0.48
CLIP1-216ENST00000541410 MYL6BP14649 208 aa18.08■□□□□ 0.48
CLIP1-216ENST00000541410 EVA1CP58658 441 aa18.08■□□□□ 0.48
CLIP1-216ENST00000541410 ADCY9O60503 1353 aa18.08■□□□□ 0.48
CLIP1-216ENST00000541410 ADAMTS7Q9UKP4 1686 aa18.08■□□□□ 0.48
CLIP1-216ENST00000541410 BMP2KLQ5H9B9 411 aa18.08■□□□□ 0.48
CLIP1-216ENST00000541410 TBC1D32Q96NH3 1257 aa18.08■□□□□ 0.48
CLIP1-216ENST00000541410 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.08■□□□□ 0.482e-7■■■■□ 21.5
CLIP1-216ENST00000541410 MAP3K2Q9Y2U5 619 aa18.08■□□□□ 0.48
CLIP1-216ENST00000541410 COL5A2P05997 1499 aaPredicted RBP18.07■□□□□ 0.48
CLIP1-216ENST00000541410 ABCA3Q99758 1704 aa18.07■□□□□ 0.48
CLIP1-216ENST00000541410 HMMRO75330 724 aa18.07■□□□□ 0.48
CLIP1-216ENST00000541410 GSPT1P15170 499 aaKnown RBP18.07■□□□□ 0.48
CLIP1-216ENST00000541410 DDX54Q8TDD1 881 aaKnown RBP18.07■□□□□ 0.48
CLIP1-216ENST00000541410 DCAF5Q96JK2 942 aa18.07■□□□□ 0.48
CLIP1-216ENST00000541410 HEG1Q9ULI3 1381 aa18.07■□□□□ 0.48
CLIP1-216ENST00000541410 BEND3Q5T5X7 828 aa18.06■□□□□ 0.48
CLIP1-216ENST00000541410 C5P01031 1676 aa18.06■□□□□ 0.48
CLIP1-216ENST00000541410 CABP4P57796 275 aa18.06■□□□□ 0.48
CLIP1-216ENST00000541410 CWF19L2Q2TBE0 894 aaKnown RBP18.05■□□□□ 0.48
CLIP1-216ENST00000541410 USP16Q9Y5T5 823 aa18.05■□□□□ 0.48
CLIP1-216ENST00000541410 TSHZ3Q63HK5 1081 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms