RNA–Protein interactions for RNA: ENST00000540683.1

CDCA3-208, Transcript of cell division cycle associated 3, humanhuman

TSL 2 BASIC

Gene CDCA3, Length 985 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-208ENST00000540683 SYT17Q9BSW7 474 aa13.98□□□□□ -0.17
CDCA3-208ENST00000540683 FHDC1Q9C0D6 1143 aaPredicted RBP13.98□□□□□ -0.17
CDCA3-208ENST00000540683 PDGFDQ9GZP0 370 aaPredicted RBP13.98□□□□□ -0.17
CDCA3-208ENST00000540683 TAF1LQ8IZX4 1826 aa13.98□□□□□ -0.17
CDCA3-208ENST00000540683 TOGARAM1Q9Y4F4 1720 aa13.98□□□□□ -0.17
CDCA3-208ENST00000540683 ATP6V1AP38606 617 aa13.97□□□□□ -0.17
CDCA3-208ENST00000540683 NUDCQ9Y266 331 aa13.97□□□□□ -0.17
CDCA3-208ENST00000540683 C4BP0C0L5 1744 aa13.97□□□□□ -0.17
CDCA3-208ENST00000540683 ZNF831Q5JPB2 1677 aa13.97□□□□□ -0.17
CDCA3-208ENST00000540683 COL24A1Q17RW2 1714 aa13.95□□□□□ -0.18
CDCA3-208ENST00000540683 KCNQ4P56696 695 aa13.95□□□□□ -0.18
CDCA3-208ENST00000540683 YY1P25490 414 aa13.94□□□□□ -0.18
CDCA3-208ENST00000540683 RC3H1Q5TC82 1133 aaKnown RBP13.94□□□□□ -0.18
CDCA3-208ENST00000540683 COL23A1Q86Y22 540 aaPredicted RBP13.94□□□□□ -0.18
CDCA3-208ENST00000540683 ASAP1Q9ULH1 1129 aa13.94□□□□□ -0.18
CDCA3-208ENST00000540683 TUBGCP6Q96RT7 1819 aa13.94□□□□□ -0.18
CDCA3-208ENST00000540683 GAS2L2Q8NHY3 880 aa13.93□□□□□ -0.18
CDCA3-208ENST00000540683 RBM42Q9BTD8 480 aaKnown RBP13.93□□□□□ -0.18
CDCA3-208ENST00000540683 ATG3Q9NT62 314 aa13.93□□□□□ -0.18
CDCA3-208ENST00000540683 RTCBQ9Y3I0 505 aaKnown RBP13.93□□□□□ -0.18
CDCA3-208ENST00000540683 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.92□□□□□ -0.18
CDCA3-208ENST00000540683 GNPATO15228 680 aa13.92□□□□□ -0.18
CDCA3-208ENST00000540683 NEFMP07197 916 aa13.92□□□□□ -0.18
CDCA3-208ENST00000540683 AEBP1Q8IUX7 1158 aa13.92□□□□□ -0.18
CDCA3-208ENST00000540683 KLHL34Q8N239 644 aa13.92□□□□□ -0.18
CDCA3-208ENST00000540683 CD2APQ9Y5K6 639 aa13.92□□□□□ -0.18
CDCA3-208ENST00000540683 U2SURPO15042 1029 aaKnown RBP13.91□□□□□ -0.18
CDCA3-208ENST00000540683 GRIN3BO60391 1043 aa13.91□□□□□ -0.18
CDCA3-208ENST00000540683 GPR162Q16538 588 aa13.91□□□□□ -0.18
CDCA3-208ENST00000540683 TRAPPC3LQ5T215 181 aa13.91□□□□□ -0.18
CDCA3-208ENST00000540683 SCN11AQ9UI33 1791 aa13.91□□□□□ -0.18
CDCA3-208ENST00000540683 UBR3Q6ZT12 1888 aa13.91□□□□□ -0.18
CDCA3-208ENST00000540683 CNTNAP4Q9C0A0 1308 aa13.9□□□□□ -0.18
CDCA3-208ENST00000540683 KDM6AO15550 1401 aaPredicted RBP13.9□□□□□ -0.18
CDCA3-208ENST00000540683 NLGN1Q8N2Q7 840 aa13.9□□□□□ -0.18
CDCA3-208ENST00000540683 NFATC2IPQ8NCF5 419 aa13.9□□□□□ -0.18
CDCA3-208ENST00000540683 LINC00116Q8NCU8 138 aa13.9□□□□□ -0.18
CDCA3-208ENST00000540683 SLC52A2Q9HAB3 445 aa13.9□□□□□ -0.18
CDCA3-208ENST00000540683 PHF14O94880 888 aa13.89□□□□□ -0.19
CDCA3-208ENST00000540683 HMOX1P09601 288 aa13.89□□□□□ -0.19
CDCA3-208ENST00000540683 RFC4P35249 363 aa13.89□□□□□ -0.19
CDCA3-208ENST00000540683 PNNQ9H307 717 aaKnown RBP13.89□□□□□ -0.19
CDCA3-208ENST00000540683 RPS6KA4O75676 772 aa13.88□□□□□ -0.19
CDCA3-208ENST00000540683 TTC5Q8N0Z6 440 aa13.88□□□□□ -0.19
CDCA3-208ENST00000540683 VSIG10Q8N0Z9 540 aa13.88□□□□□ -0.19
CDCA3-208ENST00000540683 RTN4Q9NQC3 1192 aaKnown RBP13.88□□□□□ -0.19
CDCA3-208ENST00000540683 CHD4Q14839 1912 aa13.88□□□□□ -0.19
CDCA3-208ENST00000540683 GNAT3A8MTJ3 354 aa13.87□□□□□ -0.19
CDCA3-208ENST00000540683 TEFQ10587 303 aa13.87□□□□□ -0.19
CDCA3-208ENST00000540683 CICQ96RK0 1608 aaPredicted RBP13.86□□□□□ -0.19
CDCA3-208ENST00000540683 RNMTO43148 476 aaKnown RBP13.86□□□□□ -0.19
CDCA3-208ENST00000540683 PTCD1O75127 700 aaKnown RBP13.86□□□□□ -0.19
CDCA3-208ENST00000540683 ITPK1Q13572 414 aa13.86□□□□□ -0.19
CDCA3-208ENST00000540683 NPM2Q86SE8 214 aaKnown RBP13.86□□□□□ -0.19
CDCA3-208ENST00000540683 TEX13AQ9BXU3 409 aaPredicted RBP13.86□□□□□ -0.19
CDCA3-208ENST00000540683 MRC1P22897 1456 aa13.86□□□□□ -0.19
CDCA3-208ENST00000540683 COL5A3P25940 1745 aaPredicted RBP13.85□□□□□ -0.19
CDCA3-208ENST00000540683 FCHSD2O94868 740 aa13.85□□□□□ -0.19
CDCA3-208ENST00000540683 CNGB1Q14028 1251 aaPredicted RBP13.85□□□□□ -0.19
CDCA3-208ENST00000540683 MTHFSDQ2M296 383 aaKnown RBP13.85□□□□□ -0.19
CDCA3-208ENST00000540683 MSL1Q68DK7 614 aa13.85□□□□□ -0.19
CDCA3-208ENST00000540683 RTF1Q92541 710 aaKnown RBP13.85□□□□□ -0.19
CDCA3-208ENST00000540683 COL3A1P02461 1466 aaPredicted RBP13.85□□□□□ -0.19
CDCA3-208ENST00000540683 STARD3NLO95772 234 aa13.84□□□□□ -0.19
CDCA3-208ENST00000540683 PPP2R1AP30153 589 aa13.84□□□□□ -0.19
CDCA3-208ENST00000540683 PELP1Q8IZL8 1130 aaKnown RBP13.84□□□□□ -0.19
CDCA3-208ENST00000540683 HTATSF1O43719 755 aaKnown RBP13.83□□□□□ -0.2
CDCA3-208ENST00000540683 ZPR1O75312 459 aa13.83□□□□□ -0.2
CDCA3-208ENST00000540683 U2AF1L5P0DN76 240 aaPredicted RBP13.83□□□□□ -0.2
CDCA3-208ENST00000540683 CRKLP46109 303 aaKnown RBP13.83□□□□□ -0.2
CDCA3-208ENST00000540683 U2AF1Q01081 240 aaKnown RBP eCLIP13.83□□□□□ -0.2
CDCA3-208ENST00000540683 CCDC87Q9NVE4 849 aa13.83□□□□□ -0.2
CDCA3-208ENST00000540683 PARP3Q9Y6F1 533 aa13.83□□□□□ -0.2
CDCA3-208ENST00000540683 VIRMAQ69YN4 1812 aaKnown RBP13.82□□□□□ -0.2
CDCA3-208ENST00000540683 ADAMTS7Q9UKP4 1686 aa13.82□□□□□ -0.2
CDCA3-208ENST00000540683 A0A087WZG4 1122 aa13.81□□□□□ -0.2
CDCA3-208ENST00000540683 MMP10P09238 476 aa13.81□□□□□ -0.2
CDCA3-208ENST00000540683 PRKAR2BP31323 418 aa13.81□□□□□ -0.2
CDCA3-208ENST00000540683 TGFB2P61812 414 aa13.81□□□□□ -0.2
CDCA3-208ENST00000540683 RALBP1Q15311 655 aa13.81□□□□□ -0.2
CDCA3-208ENST00000540683 ARHGEF1Q92888 912 aaKnown RBP13.81□□□□□ -0.2
CDCA3-208ENST00000540683 LGR6Q9HBX8 967 aa13.81□□□□□ -0.2
CDCA3-208ENST00000540683 SLC4A9Q96Q91 983 aa13.8□□□□□ -0.2
CDCA3-208ENST00000540683 RSPH6AQ9H0K4 717 aa13.8□□□□□ -0.2
CDCA3-208ENST00000540683 NLGN2Q8NFZ4 835 aa13.79□□□□□ -0.2
CDCA3-208ENST00000540683 FMNL2Q96PY5 1086 aa13.79□□□□□ -0.2
CDCA3-208ENST00000540683 ZNF790Q6PG37 636 aa13.78□□□□□ -0.2
CDCA3-208ENST00000540683 USP42Q9H9J4 1324 aaKnown RBP13.78□□□□□ -0.2
CDCA3-208ENST00000540683 BTBD11A6QL63 1104 aa13.77□□□□□ -0.21
CDCA3-208ENST00000540683 CYP19A1P11511 503 aaPredicted RBP13.77□□□□□ -0.21
CDCA3-208ENST00000540683 GYS1P13807 737 aa13.77□□□□□ -0.21
CDCA3-208ENST00000540683 TJP1Q07157 1748 aa13.77□□□□□ -0.21
CDCA3-208ENST00000540683 PNISRQ8TF01 805 aaKnown RBP13.77□□□□□ -0.21
CDCA3-208ENST00000540683 CEMIPQ8WUJ3 1361 aa13.77□□□□□ -0.21
CDCA3-208ENST00000540683 MAPK8IP3Q9UPT6 1336 aa13.77□□□□□ -0.21
CDCA3-208ENST00000540683 ZEB1P37275 1124 aaPredicted RBP13.76□□□□□ -0.21
CDCA3-208ENST00000540683 SLC39A6Q13433 755 aa13.76□□□□□ -0.21
CDCA3-208ENST00000540683 AMIGO3Q86WK7 504 aa13.76□□□□□ -0.21
CDCA3-208ENST00000540683 DNAJC10Q8IXB1 793 aa13.76□□□□□ -0.21
CDCA3-208ENST00000540683 NARFQ9UHQ1 456 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms