RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 DDB1Q16531 1140 aa13.88□□□□□ -0.19
VPS33A-204ENST00000540669 WDR63Q8IWG1 891 aa13.88□□□□□ -0.19
VPS33A-204ENST00000540669 RNMTO43148 476 aaKnown RBP13.87□□□□□ -0.19
VPS33A-204ENST00000540669 DCAF5Q96JK2 942 aa13.87□□□□□ -0.19
VPS33A-204ENST00000540669 C5P01031 1676 aa13.86□□□□□ -0.19
VPS33A-204ENST00000540669 HSP90AB1P08238 724 aaKnown RBP13.86□□□□□ -0.19
VPS33A-204ENST00000540669 SEPT12Q8IYM1 358 aa13.86□□□□□ -0.19
VPS33A-204ENST00000540669 SPINK5Q9NQ38 1064 aaPredicted RBP13.86□□□□□ -0.19
VPS33A-204ENST00000540669 RREB1Q92766 1687 aa13.85□□□□□ -0.19
VPS33A-204ENST00000540669 HEG1Q9ULI3 1381 aa13.85□□□□□ -0.19
VPS33A-204ENST00000540669 TJP1Q07157 1748 aa13.85□□□□□ -0.19
VPS33A-204ENST00000540669 EXOC5O00471 708 aa13.85□□□□□ -0.19
VPS33A-204ENST00000540669 PDE3BQ13370 1112 aa13.85□□□□□ -0.19
VPS33A-204ENST00000540669 C1orf141Q5JVX7 400 aa13.85□□□□□ -0.19
VPS33A-204ENST00000540669 THUMPD2Q9BTF0 503 aaKnown RBP13.85□□□□□ -0.19
VPS33A-204ENST00000540669 LGR6Q9HBX8 967 aa13.85□□□□□ -0.19
VPS33A-204ENST00000540669 BABAM1Q9NWV8 329 aa13.85□□□□□ -0.19
VPS33A-204ENST00000540669 ERVV-2B6SEH9 535 aa13.84□□□□□ -0.19
VPS33A-204ENST00000540669 MYCNP04198 464 aaPredicted RBP13.84□□□□□ -0.19
VPS33A-204ENST00000540669 DCTN1Q14203 1278 aa13.84□□□□□ -0.19
VPS33A-204ENST00000540669 MCM10Q7L590 875 aa13.84□□□□□ -0.19
VPS33A-204ENST00000540669 IFT57Q9NWB7 429 aa13.84□□□□□ -0.19
VPS33A-204ENST00000540669 COL5A3P25940 1745 aaPredicted RBP13.84□□□□□ -0.19
VPS33A-204ENST00000540669 CHL1O00533 1208 aa13.83□□□□□ -0.2
VPS33A-204ENST00000540669 SLFN5Q08AF3 891 aa13.83□□□□□ -0.2
VPS33A-204ENST00000540669 SF3B2Q13435 895 aaKnown RBP13.83□□□□□ -0.2
VPS33A-204ENST00000540669 MPRIPQ6WCQ1 1025 aa13.83□□□□□ -0.2
VPS33A-204ENST00000540669 SLC52A2Q9HAB3 445 aa13.83□□□□□ -0.2
VPS33A-204ENST00000540669 CALD1Q05682 793 aaKnown RBP13.82□□□□□ -0.2
VPS33A-204ENST00000540669 NEUROD2Q15784 382 aa13.82□□□□□ -0.2
VPS33A-204ENST00000540669 DUSP27Q5VZP5 1158 aa13.82□□□□□ -0.2
VPS33A-204ENST00000540669 CFAP44Q96MT7 982 aa13.82□□□□□ -0.2
VPS33A-204ENST00000540669 FANCIQ9NVI1 1328 aa13.82□□□□□ -0.2
VPS33A-204ENST00000540669 SENP3-EIF4A1A0A087X0R7 540 aa13.81□□□□□ -0.2
VPS33A-204ENST00000540669 GOLGA2Q08379 1002 aa13.81□□□□□ -0.2
VPS33A-204ENST00000540669 KRT27Q7Z3Y8 459 aa13.81□□□□□ -0.2
VPS33A-204ENST00000540669 E9PSI1 815 aa13.8□□□□□ -0.2
VPS33A-204ENST00000540669 DDX54Q8TDD1 881 aaKnown RBP13.8□□□□□ -0.2
VPS33A-204ENST00000540669 RTF1Q92541 710 aaKnown RBP13.8□□□□□ -0.2
VPS33A-204ENST00000540669 CDCA7LQ96GN5 454 aa13.8□□□□□ -0.2
VPS33A-204ENST00000540669 TAF1LQ8IZX4 1826 aa13.8□□□□□ -0.2
VPS33A-204ENST00000540669 GNAI1P63096 354 aa13.79□□□□□ -0.2
VPS33A-204ENST00000540669 CCDC125Q86Z20 511 aa13.79□□□□□ -0.2
VPS33A-204ENST00000540669 KAT6BQ8WYB5 2073 aa13.79□□□□□ -0.2
VPS33A-204ENST00000540669 TAF7Q15545 349 aaPredicted RBP13.78□□□□□ -0.2
VPS33A-204ENST00000540669 YTHDC1Q96MU7 727 aaKnown RBP13.78□□□□□ -0.2
VPS33A-204ENST00000540669 MBIPQ9NS73 344 aa13.78□□□□□ -0.2
VPS33A-204ENST00000540669 CACNA1FO60840 1977 aa13.77□□□□□ -0.21
VPS33A-204ENST00000540669 SALL2Q9Y467 1007 aaPredicted RBP13.77□□□□□ -0.21
VPS33A-204ENST00000540669 CACNB1Q02641 598 aaPredicted RBP13.76□□□□□ -0.21
VPS33A-204ENST00000540669 TEFQ10587 303 aa13.76□□□□□ -0.21
VPS33A-204ENST00000540669 PIGBQ92521 554 aa13.76□□□□□ -0.21
VPS33A-204ENST00000540669 MYH16Q9H6N6 1097 aa13.76□□□□□ -0.21
VPS33A-204ENST00000540669 U3KPZ7 1027 aaPredicted RBP13.76□□□□□ -0.21
VPS33A-204ENST00000540669 SOS1Q07889 1333 aaPredicted RBP13.75□□□□□ -0.21
VPS33A-204ENST00000540669 NFATC2IPQ8NCF5 419 aa13.75□□□□□ -0.21
VPS33A-204ENST00000540669 TSR2Q969E8 191 aaKnown RBP13.75□□□□□ -0.21
VPS33A-204ENST00000540669 N4BP2Q86UW6 1770 aaPredicted RBP13.75□□□□□ -0.21
VPS33A-204ENST00000540669 EIF4A1P60842 406 aaKnown RBP13.74□□□□□ -0.21
VPS33A-204ENST00000540669 ZNF790Q6PG37 636 aa13.74□□□□□ -0.21
VPS33A-204ENST00000540669 FAM196AQ6ZSG2 479 aa13.74□□□□□ -0.21
VPS33A-204ENST00000540669 UPF1Q92900 1129 aaKnown RBP eCLIP13.74□□□□□ -0.21
VPS33A-204ENST00000540669 RNF39Q9H2S5 420 aa13.74□□□□□ -0.21
VPS33A-204ENST00000540669 TMOD3Q9NYL9 352 aa13.74□□□□□ -0.21
VPS33A-204ENST00000540669 KCNQ3O43525 872 aa13.73□□□□□ -0.21
VPS33A-204ENST00000540669 KCNQ2O43526 872 aa13.73□□□□□ -0.21
VPS33A-204ENST00000540669 HOXB7P09629 217 aa13.73□□□□□ -0.21
VPS33A-204ENST00000540669 CT47B1P0C2W7 299 aaPredicted RBP13.73□□□□□ -0.21
VPS33A-204ENST00000540669 PRIM1P49642 420 aaKnown RBP13.73□□□□□ -0.21
VPS33A-204ENST00000540669 CABP4P57796 275 aa13.73□□□□□ -0.21
VPS33A-204ENST00000540669 PTF1AQ7RTS3 328 aa13.73□□□□□ -0.21
VPS33A-204ENST00000540669 ATG3Q9NT62 314 aa13.73□□□□□ -0.21
VPS33A-204ENST00000540669 BTBD11A6QL63 1104 aa13.72□□□□□ -0.21
VPS33A-204ENST00000540669 FAM182BQ5T319 152 aa13.72□□□□□ -0.21
VPS33A-204ENST00000540669 SLC4A9Q96Q91 983 aa13.72□□□□□ -0.21
VPS33A-204ENST00000540669 BCL11BQ9C0K0 894 aaPredicted RBP13.72□□□□□ -0.21
VPS33A-204ENST00000540669 TSPYL4Q9UJ04 414 aa13.72□□□□□ -0.21
VPS33A-204ENST00000540669 MYH14Q7Z406 1995 aaKnown RBP13.72□□□□□ -0.21
VPS33A-204ENST00000540669 NUP188Q5SRE5 1749 aa13.72□□□□□ -0.21
VPS33A-204ENST00000540669 PALLDQ8WX93 1383 aa13.71□□□□□ -0.21
VPS33A-204ENST00000540669 BAG6P46379 1132 aa13.71□□□□□ -0.21
VPS33A-204ENST00000540669 ZNF496Q96IT1 587 aaPredicted RBP13.71□□□□□ -0.21
VPS33A-204ENST00000540669 QSER1Q2KHR3 1735 aa13.7□□□□□ -0.22
VPS33A-204ENST00000540669 SLC39A6Q13433 755 aa13.7□□□□□ -0.22
VPS33A-204ENST00000540669 KRT24Q2M2I5 525 aa13.7□□□□□ -0.22
VPS33A-204ENST00000540669 VSIG10Q8N0Z9 540 aa13.7□□□□□ -0.22
VPS33A-204ENST00000540669 C8orf58Q8NAV2 365 aa13.7□□□□□ -0.22
VPS33A-204ENST00000540669 MIS18AQ9NYP9 233 aa13.7□□□□□ -0.22
VPS33A-204ENST00000540669 ASAP1Q9ULH1 1129 aa13.7□□□□□ -0.22
VPS33A-204ENST00000540669 C4BP0C0L5 1744 aa13.7□□□□□ -0.22
VPS33A-204ENST00000540669 TUBGCP6Q96RT7 1819 aa13.69□□□□□ -0.22
VPS33A-204ENST00000540669 GIGYF1O75420 1035 aaPredicted RBP13.69□□□□□ -0.22
VPS33A-204ENST00000540669 EXOSC9Q06265 439 aaKnown RBP13.69□□□□□ -0.22
VPS33A-204ENST00000540669 TSPYL6Q8N831 410 aa13.69□□□□□ -0.22
VPS33A-204ENST00000540669 ZNF428Q96B54 188 aa13.69□□□□□ -0.22
VPS33A-204ENST00000540669 ACSBG1Q96GR2 724 aa13.69□□□□□ -0.22
VPS33A-204ENST00000540669 UBR3Q6ZT12 1888 aa13.69□□□□□ -0.22
VPS33A-204ENST00000540669 RNF123Q5XPI4 1314 aa13.68□□□□□ -0.22
VPS33A-204ENST00000540669 BRPF1P55201 1214 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-204ENST00000540669 BCORQ6W2J9 1755 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms