RNA–Protein interactions for RNA: ENST00000538970.5

VAMP1-206, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best)

Gene VAMP1, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-206ENST00000538970 LINC00116Q8NCU8 138 aa17.17■□□□□ 0.34
VAMP1-206ENST00000538970 ASAP1Q9ULH1 1129 aa17.17■□□□□ 0.34
VAMP1-206ENST00000538970 KDRP35968 1356 aa17.15■□□□□ 0.34
VAMP1-206ENST00000538970 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.15■□□□□ 0.34
VAMP1-206ENST00000538970 PHF14O94880 888 aa17.15■□□□□ 0.34
VAMP1-206ENST00000538970 ITPK1Q13572 414 aa17.15■□□□□ 0.34
VAMP1-206ENST00000538970 MORC1Q86VD1 984 aa17.15■□□□□ 0.34
VAMP1-206ENST00000538970 ATG3Q9NT62 314 aa17.15■□□□□ 0.34
VAMP1-206ENST00000538970 KIF3CO14782 793 aa17.14■□□□□ 0.33
VAMP1-206ENST00000538970 SSFA2P28290 1259 aa17.14■□□□□ 0.33
VAMP1-206ENST00000538970 SMIM5Q71RC9 77 aa17.14■□□□□ 0.33
VAMP1-206ENST00000538970 KDM6AO15550 1401 aaPredicted RBP17.13■□□□□ 0.33
VAMP1-206ENST00000538970 ATP6V1AP38606 617 aa17.13■□□□□ 0.33
VAMP1-206ENST00000538970 DNAJC5GQ8N7S2 189 aa17.13■□□□□ 0.33
VAMP1-206ENST00000538970 WWC3Q9ULE0 1092 aa17.13■□□□□ 0.33
VAMP1-206ENST00000538970 CD2APQ9Y5K6 639 aa17.13■□□□□ 0.33
VAMP1-206ENST00000538970 HSP90AB1P08238 724 aaKnown RBP17.12■□□□□ 0.33
VAMP1-206ENST00000538970 PLEKHO1Q53GL0 409 aaPredicted RBP17.12■□□□□ 0.33
VAMP1-206ENST00000538970 AEBP1Q8IUX7 1158 aa17.12■□□□□ 0.33
VAMP1-206ENST00000538970 DCAF5Q96JK2 942 aa17.12■□□□□ 0.33
VAMP1-206ENST00000538970 KNSTRNQ9Y448 316 aa17.12■□□□□ 0.33
VAMP1-206ENST00000538970 ZNF831Q5JPB2 1677 aa17.12■□□□□ 0.33
VAMP1-206ENST00000538970 ERVV-2B6SEH9 535 aa17.11■□□□□ 0.33
VAMP1-206ENST00000538970 GNPATO15228 680 aa17.11■□□□□ 0.33
VAMP1-206ENST00000538970 ZNF530Q6P9A1 599 aaPredicted RBP17.11■□□□□ 0.33
VAMP1-206ENST00000538970 CAPN15O75808 1086 aa17.1■□□□□ 0.33
VAMP1-206ENST00000538970 AMOTQ4VCS5 1084 aa17.1■□□□□ 0.33
VAMP1-206ENST00000538970 AMER1Q5JTC6 1135 aaPredicted RBP17.1■□□□□ 0.33
VAMP1-206ENST00000538970 KIF7Q2M1P5 1343 aa17.1■□□□□ 0.33
VAMP1-206ENST00000538970 COL13A1Q5TAT6 717 aaPredicted RBP17.09■□□□□ 0.33
VAMP1-206ENST00000538970 SLC4A9Q96Q91 983 aa17.09■□□□□ 0.33
VAMP1-206ENST00000538970 COL5A3P25940 1745 aaPredicted RBP17.09■□□□□ 0.33
VAMP1-206ENST00000538970 IL13P35225 146 aa17.08■□□□□ 0.32
VAMP1-206ENST00000538970 APLP1P51693 650 aa17.08■□□□□ 0.32
VAMP1-206ENST00000538970 SULT6B1Q6IMI4 303 aa17.07■□□□□ 0.32
VAMP1-206ENST00000538970 CABP4P57796 275 aa17.06■□□□□ 0.32
VAMP1-206ENST00000538970 C1orf141Q5JVX7 400 aa17.06■□□□□ 0.32
VAMP1-206ENST00000538970 RBM42Q9BTD8 480 aaKnown RBP17.06■□□□□ 0.32
VAMP1-206ENST00000538970 CNTNAP4Q9C0A0 1308 aa17.05■□□□□ 0.32
VAMP1-206ENST00000538970 MTHFSP49914 203 aa17.05■□□□□ 0.32
VAMP1-206ENST00000538970 RTCBQ9Y3I0 505 aaKnown RBP17.05■□□□□ 0.32
VAMP1-206ENST00000538970 CICQ96RK0 1608 aaPredicted RBP17.04■□□□□ 0.32
VAMP1-206ENST00000538970 MMP10P09238 476 aa17.03■□□□□ 0.32
VAMP1-206ENST00000538970 ADRA2BP18089 450 aa17.03■□□□□ 0.32
VAMP1-206ENST00000538970 HTRA3P83110 453 aa17.03■□□□□ 0.32
VAMP1-206ENST00000538970 TRAPPC3LQ5T215 181 aa17.03■□□□□ 0.32
VAMP1-206ENST00000538970 RC3H1Q5TC82 1133 aaKnown RBP17.03■□□□□ 0.32
VAMP1-206ENST00000538970 PER1O15534 1290 aaPredicted RBP17.02■□□□□ 0.32
VAMP1-206ENST00000538970 TJP1Q07157 1748 aa17.01■□□□□ 0.31
VAMP1-206ENST00000538970 MRC1P22897 1456 aa17.01■□□□□ 0.31
VAMP1-206ENST00000538970 NFATC2IPQ8NCF5 419 aa17.01■□□□□ 0.31
VAMP1-206ENST00000538970 SCN11AQ9UI33 1791 aa17.01■□□□□ 0.31
VAMP1-206ENST00000538970 C4AP0C0L4 1744 aa17.01■□□□□ 0.31
VAMP1-206ENST00000538970 WDR90Q96KV7 1748 aa17.01■□□□□ 0.31
VAMP1-206ENST00000538970 KIAA1551Q9HCM1 1747 aa17.01■□□□□ 0.31
VAMP1-206ENST00000538970 PXDNLA1KZ92 1463 aa17■□□□□ 0.31
VAMP1-206ENST00000538970 PTCD1O75127 700 aaKnown RBP17■□□□□ 0.31
VAMP1-206ENST00000538970 RPS6KA4O75676 772 aa17■□□□□ 0.31
VAMP1-206ENST00000538970 AKAP4Q5JQC9 854 aa17■□□□□ 0.31
VAMP1-206ENST00000538970 C10orf71Q711Q0 1435 aa17■□□□□ 0.31
VAMP1-206ENST00000538970 NLGN1Q8N2Q7 840 aa17■□□□□ 0.31
VAMP1-206ENST00000538970 ARHGEF1Q92888 912 aaKnown RBP17■□□□□ 0.31
VAMP1-206ENST00000538970 KIF13BQ9NQT8 1826 aa17■□□□□ 0.31
VAMP1-206ENST00000538970 TOMM70O94826 608 aa16.99■□□□□ 0.31
VAMP1-206ENST00000538970 GYS1P13807 737 aa16.99■□□□□ 0.31
VAMP1-206ENST00000538970 HMOX1P09601 288 aa16.98■□□□□ 0.31
VAMP1-206ENST00000538970 NMRK2Q9NPI5 230 aa16.98■□□□□ 0.31
VAMP1-206ENST00000538970 MYH14Q7Z406 1995 aaKnown RBP16.98■□□□□ 0.31
VAMP1-206ENST00000538970 COL3A1P02461 1466 aaPredicted RBP16.98■□□□□ 0.31
VAMP1-206ENST00000538970 ADAMTS7Q9UKP4 1686 aa16.97■□□□□ 0.31
VAMP1-206ENST00000538970 RFC4P35249 363 aa16.97■□□□□ 0.31
VAMP1-206ENST00000538970 CRKLP46109 303 aaKnown RBP16.97■□□□□ 0.31
VAMP1-206ENST00000538970 CC2D1BQ5T0F9 858 aaKnown RBP16.97■□□□□ 0.31
VAMP1-206ENST00000538970 SLC52A2Q9HAB3 445 aa16.97■□□□□ 0.31
VAMP1-206ENST00000538970 NPC1L1Q9UHC9 1359 aa16.97■□□□□ 0.31
VAMP1-206ENST00000538970 TNS4Q8IZW8 715 aa16.96■□□□□ 0.31
VAMP1-206ENST00000538970 KLRG1Q96E93 195 aa16.96■□□□□ 0.31
VAMP1-206ENST00000538970 DIAPH1O60610 1272 aaKnown RBP16.95■□□□□ 0.3
VAMP1-206ENST00000538970 PRELPP51888 382 aa16.95■□□□□ 0.3
VAMP1-206ENST00000538970 JMYQ8N9B5 988 aa16.95■□□□□ 0.3
VAMP1-206ENST00000538970 LGR6Q9HBX8 967 aa16.95■□□□□ 0.3
VAMP1-206ENST00000538970 KCPQ6ZWJ8 1503 aa16.95■□□□□ 0.3
VAMP1-206ENST00000538970 USP42Q9H9J4 1324 aaKnown RBP16.95■□□□□ 0.3
VAMP1-206ENST00000538970 RNMTO43148 476 aaKnown RBP16.94■□□□□ 0.3
VAMP1-206ENST00000538970 TGFB2P61812 414 aa16.94■□□□□ 0.3
VAMP1-206ENST00000538970 MTHFSDQ2M296 383 aaKnown RBP16.94■□□□□ 0.3
VAMP1-206ENST00000538970 CCDC87Q9NVE4 849 aa16.94■□□□□ 0.3
VAMP1-206ENST00000538970 N4BP2Q86UW6 1770 aaPredicted RBP16.93■□□□□ 0.3
VAMP1-206ENST00000538970 INTS5Q6P9B9 1019 aaKnown RBP16.93■□□□□ 0.3
VAMP1-206ENST00000538970 DNAJC10Q8IXB1 793 aa16.93■□□□□ 0.3
VAMP1-206ENST00000538970 SRP68Q9UHB9 627 aaKnown RBP16.93■□□□□ 0.3
VAMP1-206ENST00000538970 PARP3Q9Y6F1 533 aa16.93■□□□□ 0.3
VAMP1-206ENST00000538970 PCNTO95613 3336 aa16.93■□□□□ 0.3
VAMP1-206ENST00000538970 A0A0G2JLW4 131 aa16.91■□□□□ 0.3
VAMP1-206ENST00000538970 SLC39A6Q13433 755 aa16.91■□□□□ 0.3
VAMP1-206ENST00000538970 VIRMAQ69YN4 1812 aaKnown RBP16.91■□□□□ 0.3
VAMP1-206ENST00000538970 DPEP1P16444 411 aa16.9■□□□□ 0.3
VAMP1-206ENST00000538970 DDR1Q08345 913 aa16.9■□□□□ 0.3
VAMP1-206ENST00000538970 FKBP8Q14318 412 aa16.9■□□□□ 0.3
VAMP1-206ENST00000538970 BCS1LQ9Y276 419 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms