RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 EIF4G3O43432 1585 aaKnown RBP8.48□□□□□ -1.05
USP28-207ENST00000538475 PDE3AQ14432 1141 aa8.48□□□□□ -1.05
USP28-207ENST00000538475 HS1BP3Q53T59 392 aa8.48□□□□□ -1.05
USP28-207ENST00000538475 RC3H1Q5TC82 1133 aaKnown RBP8.48□□□□□ -1.05
USP28-207ENST00000538475 PROCA1Q8NCQ7 364 aaPredicted RBP8.48□□□□□ -1.05
USP28-207ENST00000538475 POGKQ9P215 609 aa8.48□□□□□ -1.05
USP28-207ENST00000538475 POLA1P09884 1462 aaPredicted RBP8.48□□□□□ -1.05
USP28-207ENST00000538475 NLRP1Q9C000 1473 aa8.48□□□□□ -1.05
USP28-207ENST00000538475 SHANK2Q9UPX8 1470 aa8.48□□□□□ -1.05
USP28-207ENST00000538475 LAMC3Q9Y6N6 1575 aa8.48□□□□□ -1.05
USP28-207ENST00000538475 GPRASP1Q5JY77 1395 aa8.48□□□□□ -1.05
USP28-207ENST00000538475 COL17A1Q9UMD9 1497 aaPredicted RBP8.47□□□□□ -1.05
USP28-207ENST00000538475 DGAT1O75907 488 aa8.47□□□□□ -1.05
USP28-207ENST00000538475 MCM4P33991 863 aa8.47□□□□□ -1.05
USP28-207ENST00000538475 LINC01559Q495D7 138 aa8.47□□□□□ -1.05
USP28-207ENST00000538475 MRGPRX2Q96LB1 330 aa8.47□□□□□ -1.05
USP28-207ENST00000538475 CHMP5Q9NZZ3 219 aa8.47□□□□□ -1.05
USP28-207ENST00000538475 USP19O94966 1318 aa8.47□□□□□ -1.05
USP28-207ENST00000538475 SHROOM2Q13796 1616 aa8.47□□□□□ -1.05
USP28-207ENST00000538475 IBTKQ9P2D0 1353 aaPredicted RBP8.47□□□□□ -1.05
USP28-207ENST00000538475 PRDM15P57071 1507 aaPredicted RBP8.46□□□□□ -1.05
USP28-207ENST00000538475 PER1O15534 1290 aaPredicted RBP8.46□□□□□ -1.06
USP28-207ENST00000538475 SKOR1P84550 965 aa8.46□□□□□ -1.06
USP28-207ENST00000538475 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.46□□□□□ -1.06
USP28-207ENST00000538475 TRMT2AQ8IZ69 625 aaKnown RBP8.46□□□□□ -1.06
USP28-207ENST00000538475 BAP1Q92560 729 aa8.46□□□□□ -1.06
USP28-207ENST00000538475 PCMTD1Q96MG8 357 aaPredicted RBP8.46□□□□□ -1.06
USP28-207ENST00000538475 IQGAP2Q13576 1575 aa8.46□□□□□ -1.06
USP28-207ENST00000538475 ZNF521Q96K83 1311 aa8.46□□□□□ -1.06
USP28-207ENST00000538475 NPC1L1Q9UHC9 1359 aa8.46□□□□□ -1.06
USP28-207ENST00000538475 NUP160Q12769 1436 aa8.46□□□□□ -1.06
USP28-207ENST00000538475 FANCD2Q9BXW9 1451 aa8.45□□□□□ -1.06
USP28-207ENST00000538475 SMAP1Q8IYB5 467 aaPredicted RBP8.45□□□□□ -1.06
USP28-207ENST00000538475 EHBP1Q8NDI1 1231 aa8.45□□□□□ -1.06
USP28-207ENST00000538475 SNIP1Q8TAD8 396 aaKnown RBP8.45□□□□□ -1.06
USP28-207ENST00000538475 TRIM44Q96DX7 344 aaPredicted RBP8.45□□□□□ -1.06
USP28-207ENST00000538475 CARD11Q9BXL7 1154 aa8.45□□□□□ -1.06
USP28-207ENST00000538475 MAP10Q9P2G4 905 aa8.45□□□□□ -1.06
USP28-207ENST00000538475 NKTRP30414 1462 aaKnown RBP8.45□□□□□ -1.06
USP28-207ENST00000538475 SH3BP2P78314 561 aa8.44□□□□□ -1.06
USP28-207ENST00000538475 CCDC173Q0VFZ6 552 aa8.44□□□□□ -1.06
USP28-207ENST00000538475 DUSP27Q5VZP5 1158 aa8.44□□□□□ -1.06
USP28-207ENST00000538475 PMFBP1Q8TBY8 1022 aa8.44□□□□□ -1.06
USP28-207ENST00000538475 TBC1D32Q96NH3 1257 aa8.44□□□□□ -1.06
USP28-207ENST00000538475 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP28-207ENST00000538475 GRPEL1Q9HAV7 217 aa8.44□□□□□ -1.06
USP28-207ENST00000538475 TOR4AQ9NXH8 423 aa8.44□□□□□ -1.06
USP28-207ENST00000538475 PIK3C2GO75747 1445 aa8.44□□□□□ -1.06
USP28-207ENST00000538475 MYO5CQ9NQX4 1742 aa8.43□□□□□ -1.06
USP28-207ENST00000538475 TRAK2O60296 914 aa8.43□□□□□ -1.06
USP28-207ENST00000538475 OFD1O75665 1012 aa8.43□□□□□ -1.06
USP28-207ENST00000538475 F12P00748 615 aaPredicted RBP8.43□□□□□ -1.06
USP28-207ENST00000538475 MCM5P33992 734 aa8.43□□□□□ -1.06
USP28-207ENST00000538475 CTDSPL2Q05D32 466 aa8.43□□□□□ -1.06
USP28-207ENST00000538475 ZNF511Q8NB15 262 aa8.43□□□□□ -1.06
USP28-207ENST00000538475 PPP1R9BQ96SB3 815 aa8.43□□□□□ -1.06
USP28-207ENST00000538475 CHIC2Q9UKJ5 165 aa8.43□□□□□ -1.06
USP28-207ENST00000538475 PTPRGP23470 1445 aa8.43□□□□□ -1.06
USP28-207ENST00000538475 ARHGAP31Q2M1Z3 1444 aa8.43□□□□□ -1.06
USP28-207ENST00000538475 KIAA0586Q9BVV6 1533 aa8.43□□□□□ -1.06
USP28-207ENST00000538475 RNF17Q9BXT8 1623 aaKnown RBP8.43□□□□□ -1.06
USP28-207ENST00000538475 AP1G2O75843 785 aa8.42□□□□□ -1.06
USP28-207ENST00000538475 UTP14CQ5TAP6 766 aaKnown RBP8.42□□□□□ -1.06
USP28-207ENST00000538475 ANP32BQ92688 251 aaKnown RBP8.42□□□□□ -1.06
USP28-207ENST00000538475 GOPCQ9HD26 462 aa8.42□□□□□ -1.06
USP28-207ENST00000538475 NCOA3Q9Y6Q9 1424 aa8.42□□□□□ -1.06
USP28-207ENST00000538475 ABCC10Q5T3U5 1492 aa8.42□□□□□ -1.06
USP28-207ENST00000538475 SYNMO15061 1565 aa8.42□□□□□ -1.06
USP28-207ENST00000538475 PBRM1Q86U86 1689 aa8.42□□□□□ -1.06
USP28-207ENST00000538475 SLFN5Q08AF3 891 aa8.41□□□□□ -1.06
USP28-207ENST00000538475 AGERQ15109 404 aa8.41□□□□□ -1.06
USP28-207ENST00000538475 PPP2R2DQ66LE6 453 aa8.41□□□□□ -1.06
USP28-207ENST00000538475 ZSCAN30Q86W11 494 aa8.41□□□□□ -1.06
USP28-207ENST00000538475 ARMC2Q8NEN0 867 aa8.41□□□□□ -1.06
USP28-207ENST00000538475 RAPGEF6Q8TEU7 1601 aa8.4□□□□□ -1.06
USP28-207ENST00000538475 ARHGEF5Q12774 1597 aa8.4□□□□□ -1.06
USP28-207ENST00000538475 ALDH1A1P00352 501 aa8.4□□□□□ -1.06
USP28-207ENST00000538475 GBP4Q96PP9 640 aa8.4□□□□□ -1.06
USP28-207ENST00000538475 PRDM4Q9UKN5 801 aa8.4□□□□□ -1.06
USP28-207ENST00000538475 PRAG1Q86YV5 1406 aa8.39□□□□□ -1.07
USP28-207ENST00000538475 ST20-MTHFSA0A0A6YYL1 179 aa8.39□□□□□ -1.07
USP28-207ENST00000538475 E9PSI1 815 aa8.39□□□□□ -1.07
USP28-207ENST00000538475 J3QL48 77 aa8.39□□□□□ -1.07
USP28-207ENST00000538475 DYNC1I1O14576 645 aa8.39□□□□□ -1.07
USP28-207ENST00000538475 PLIN1O60240 522 aa8.39□□□□□ -1.07
USP28-207ENST00000538475 FBXO31Q5XUX0 539 aaPredicted RBP8.39□□□□□ -1.07
USP28-207ENST00000538475 CLEC17AQ6ZS10 378 aa8.39□□□□□ -1.07
USP28-207ENST00000538475 SNX21Q969T3 373 aa8.39□□□□□ -1.07
USP28-207ENST00000538475 CDC42BPAQ5VT25 1732 aa8.39□□□□□ -1.07
USP28-207ENST00000538475 KIAA1210Q9ULL0 1709 aa8.39□□□□□ -1.07
USP28-207ENST00000538475 IQGAP1P46940 1657 aa8.39□□□□□ -1.07
USP28-207ENST00000538475 REREQ9P2R6 1566 aa8.39□□□□□ -1.07
USP28-207ENST00000538475 CCDC141Q6ZP82 1450 aa8.38□□□□□ -1.07
USP28-207ENST00000538475 RAD54L2Q9Y4B4 1467 aa8.38□□□□□ -1.07
USP28-207ENST00000538475 ANKRD50Q9ULJ7 1429 aa8.38□□□□□ -1.07
USP28-207ENST00000538475 YEATS2Q9ULM3 1422 aa8.38□□□□□ -1.07
USP28-207ENST00000538475 SMPD1P17405 629 aa8.38□□□□□ -1.07
USP28-207ENST00000538475 VARSP26640 1264 aaKnown RBP8.38□□□□□ -1.07
USP28-207ENST00000538475 CDCA8Q53HL2 280 aa8.38□□□□□ -1.07
USP28-207ENST00000538475 ZNF787Q6DD87 383 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms