RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 RETREG2Q8NC44 543 aa9.15□□□□□ -0.94
USP28-202ENST00000535607 CCDC85AQ96PX6 553 aaPredicted RBP9.15□□□□□ -0.94
USP28-202ENST00000535607 PGPEP1Q9NXJ5 209 aa9.15□□□□□ -0.94
USP28-202ENST00000535607 ERCC6L2Q5T890 1561 aa9.15□□□□□ -0.95
USP28-202ENST00000535607 ARHGEF11O15085 1522 aa9.15□□□□□ -0.95
USP28-202ENST00000535607 UHRF1BP1LA0JNW5 1464 aa9.15□□□□□ -0.95
USP28-202ENST00000535607 ATG7O95352 703 aa9.14□□□□□ -0.95
USP28-202ENST00000535607 CCDC116Q8IYX3 515 aa9.14□□□□□ -0.95
USP28-202ENST00000535607 USTQ9Y2C2 406 aa9.14□□□□□ -0.95
USP28-202ENST00000535607 ABCC2Q92887 1545 aa9.14□□□□□ -0.95
USP28-202ENST00000535607 PTPRGP23470 1445 aa9.14□□□□□ -0.95
USP28-202ENST00000535607 TIAM1Q13009 1591 aa9.13□□□□□ -0.95
USP28-202ENST00000535607 ERVH48-1M5A8F1 160 aa9.13□□□□□ -0.95
USP28-202ENST00000535607 DNAAF2Q9NVR5 837 aaKnown RBP9.13□□□□□ -0.95
USP28-202ENST00000535607 FAM196BA6NMK8 535 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 USP17L15C9J2P7 530 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 USP17L10C9JJH3 530 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 USP17L13C9JLJ4 530 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 USP17L12C9JPN9 530 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 USP17L11C9JVI0 530 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 USP17L21D6R901 530 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 USP17L18D6R9N7 530 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 USP17L22D6RA61 530 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 USP17L17D6RBQ6 530 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 USP17L19D6RCP7 530 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 USP17L20D6RJB6 530 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 GTF2IP78347 998 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 USP17L24Q0WX57 530 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 KANK4Q5T7N3 995 aaPredicted RBP9.12□□□□□ -0.95
USP28-202ENST00000535607 TRAF7Q6Q0C0 670 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 OGFOD1Q8N543 542 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 SNIP1Q8TAD8 396 aaKnown RBP9.12□□□□□ -0.95
USP28-202ENST00000535607 CHIC2Q9UKJ5 165 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 NOVA2Q9UNW9 492 aaKnown RBP9.12□□□□□ -0.95
USP28-202ENST00000535607 EMILIN1Q9Y6C2 1016 aa9.12□□□□□ -0.95
USP28-202ENST00000535607 NUP153P49790 1475 aaKnown RBP9.12□□□□□ -0.95
USP28-202ENST00000535607 RANGAP1P46060 587 aaPredicted RBP9.11□□□□□ -0.95
USP28-202ENST00000535607 CC2D2BQ6DHV5 1058 aa9.11□□□□□ -0.95
USP28-202ENST00000535607 FAM200AQ8TCP9 573 aa9.11□□□□□ -0.95
USP28-202ENST00000535607 ZNF594Q96JF6 807 aaPredicted RBP9.11□□□□□ -0.95
USP28-202ENST00000535607 EPRSP07814 1512 aaKnown RBP9.1□□□□□ -0.95
USP28-202ENST00000535607 PLB1Q6P1J6 1458 aa9.1□□□□□ -0.95
USP28-202ENST00000535607 RIMBP3CA6NJZ7 1639 aa9.1□□□□□ -0.95
USP28-202ENST00000535607 RIMBP3BA6NNM3 1639 aa9.1□□□□□ -0.95
USP28-202ENST00000535607 RIMBP3Q9UFD9 1639 aa9.1□□□□□ -0.95
USP28-202ENST00000535607 SIAH2O43255 324 aa9.1□□□□□ -0.95
USP28-202ENST00000535607 B4GALNT3Q6L9W6 998 aa9.1□□□□□ -0.95
USP28-202ENST00000535607 LARGE2Q8N3Y3 721 aa9.1□□□□□ -0.95
USP28-202ENST00000535607 EMID1Q96A84 441 aaPredicted RBP9.1□□□□□ -0.95
USP28-202ENST00000535607 UACAQ9BZF9 1416 aa9.1□□□□□ -0.95
USP28-202ENST00000535607 EHBP1L1Q8N3D4 1523 aa9.1□□□□□ -0.95
USP28-202ENST00000535607 LRRIQ1Q96JM4 1722 aa9.09□□□□□ -0.95
USP28-202ENST00000535607 GRM5P41594 1212 aa9.09□□□□□ -0.95
USP28-202ENST00000535607 NNTQ13423 1086 aa9.09□□□□□ -0.95
USP28-202ENST00000535607 ELOAQ14241 798 aaKnown RBP9.09□□□□□ -0.95
USP28-202ENST00000535607 TSGA10IPQ3SY00 556 aa9.09□□□□□ -0.95
USP28-202ENST00000535607 CYP2U1Q7Z449 544 aa9.09□□□□□ -0.95
USP28-202ENST00000535607 CDCA7Q9BWT1 371 aaPredicted RBP9.09□□□□□ -0.95
USP28-202ENST00000535607 CYLDQ9NQC7 956 aa9.09□□□□□ -0.95
USP28-202ENST00000535607 ZBTB7CA1YPR0 619 aa9.08□□□□□ -0.96
USP28-202ENST00000535607 TNFRSF10AO00220 468 aa9.08□□□□□ -0.96
USP28-202ENST00000535607 SRPK2P78362 688 aaKnown RBP9.08□□□□□ -0.96
USP28-202ENST00000535607 PPP1R26Q5T8A7 1209 aaPredicted RBP9.08□□□□□ -0.96
USP28-202ENST00000535607 ANKMY2Q8IV38 441 aa9.08□□□□□ -0.96
USP28-202ENST00000535607 KDM5BQ9UGL1 1544 aa9.08□□□□□ -0.96
USP28-202ENST00000535607 DHX57Q6P158 1386 aaKnown RBP9.08□□□□□ -0.96
USP28-202ENST00000535607 ADCY10Q96PN6 1610 aa9.08□□□□□ -0.96
USP28-202ENST00000535607 CRTC2Q53ET0 693 aaPredicted RBP9.07□□□□□ -0.96
USP28-202ENST00000535607 KCTD17Q8N5Z5 321 aa9.07□□□□□ -0.96
USP28-202ENST00000535607 ZNF784Q8NCA9 323 aaPredicted RBP9.07□□□□□ -0.96
USP28-202ENST00000535607 TPCN2Q8NHX9 752 aa9.07□□□□□ -0.96
USP28-202ENST00000535607 TRAIPQ9BWF2 469 aa9.07□□□□□ -0.96
USP28-202ENST00000535607 PATL2C9JE40 543 aaKnown RBP9.06□□□□□ -0.96
USP28-202ENST00000535607 RGS20O76081 388 aa9.06□□□□□ -0.96
USP28-202ENST00000535607 SEC13P55735 322 aa9.06□□□□□ -0.96
USP28-202ENST00000535607 DPYDQ12882 1025 aa9.06□□□□□ -0.96
USP28-202ENST00000535607 PTK7Q13308 1070 aa9.06□□□□□ -0.96
USP28-202ENST00000535607 CCDC102BQ68D86 513 aa9.06□□□□□ -0.96
USP28-202ENST00000535607 TMPRSS4Q9NRS4 437 aa9.06□□□□□ -0.96
USP28-202ENST00000535607 PKD2L1Q9P0L9 805 aa9.06□□□□□ -0.96
USP28-202ENST00000535607 LRRC9Q6ZRR7 1453 aa9.06□□□□□ -0.96
USP28-202ENST00000535607 FANCIQ9NVI1 1328 aa9.05□□□□□ -0.96
USP28-202ENST00000535607 CCER2I3L3R5 266 aa9.05□□□□□ -0.96
USP28-202ENST00000535607 ERVK-9P63128 1117 aa9.05□□□□□ -0.96
USP28-202ENST00000535607 ESCO1Q5FWF5 840 aa9.05□□□□□ -0.96
USP28-202ENST00000535607 ERICH6BQ5W0A0 696 aa9.05□□□□□ -0.96
USP28-202ENST00000535607 AEBP1Q8IUX7 1158 aa9.05□□□□□ -0.96
USP28-202ENST00000535607 ZCCHC11Q5TAX3 1644 aaKnown RBP9.05□□□□□ -0.96
USP28-202ENST00000535607 CDK13Q14004 1512 aaKnown RBP9.05□□□□□ -0.96
USP28-202ENST00000535607 CLDN10P78369 228 aa9.04□□□□□ -0.96
USP28-202ENST00000535607 CDK11AQ9UQ88 783 aaPredicted RBP9.04□□□□□ -0.96
USP28-202ENST00000535607 SUPT6HQ7KZ85 1726 aaKnown RBP9.03□□□□□ -0.96
USP28-202ENST00000535607 KIF14Q15058 1648 aa9.03□□□□□ -0.96
USP28-202ENST00000535607 BACH1O14867 736 aa9.03□□□□□ -0.96
USP28-202ENST00000535607 WDR4P57081 412 aaKnown RBP9.03□□□□□ -0.96
USP28-202ENST00000535607 SIX5Q8N196 739 aa9.03□□□□□ -0.96
USP28-202ENST00000535607 HINFPQ9BQA5 517 aa9.03□□□□□ -0.96
USP28-202ENST00000535607 ATP10BO94823 1461 aa9.02□□□□□ -0.96
USP28-202ENST00000535607 MAPKBP1O60336 1514 aa9.02□□□□□ -0.97
USP28-202ENST00000535607 GDF9O60383 454 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms