RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 MSL1Q68DK7 614 aa20.89■□□□□ 0.93
CPSF1-211ENST00000533492 C4BP0C0L5 1744 aa20.89■□□□□ 0.93
CPSF1-211ENST00000533492 PHF14O94880 888 aa20.88■□□□□ 0.93
CPSF1-211ENST00000533492 LINC00116Q8NCU8 138 aa20.88■□□□□ 0.93
CPSF1-211ENST00000533492 RBM42Q9BTD8 480 aaKnown RBP20.88■□□□□ 0.93
CPSF1-211ENST00000533492 NPC1L1Q9UHC9 1359 aa20.87■□□□□ 0.93
CPSF1-211ENST00000533492 HMOX1P09601 288 aa20.87■□□□□ 0.93
CPSF1-211ENST00000533492 ITPK1Q13572 414 aa20.87■□□□□ 0.93
CPSF1-211ENST00000533492 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.86■□□□□ 0.93
CPSF1-211ENST00000533492 COL24A1Q17RW2 1714 aa20.86■□□□□ 0.93
CPSF1-211ENST00000533492 GNPATO15228 680 aa20.85■□□□□ 0.93
CPSF1-211ENST00000533492 SSFA2P28290 1259 aa20.85■□□□□ 0.93
CPSF1-211ENST00000533492 GPR162Q16538 588 aa20.85■□□□□ 0.93
CPSF1-211ENST00000533492 KDM6AO15550 1401 aaPredicted RBP20.85■□□□□ 0.93
CPSF1-211ENST00000533492 AKAP4Q5JQC9 854 aa20.84■□□□□ 0.93
CPSF1-211ENST00000533492 SMIM5Q71RC9 77 aa20.84■□□□□ 0.93
CPSF1-211ENST00000533492 NFATC2IPQ8NCF5 419 aa20.84■□□□□ 0.93
CPSF1-211ENST00000533492 AMIGO3Q86WK7 504 aa20.83■□□□□ 0.93
CPSF1-211ENST00000533492 PELP1Q8IZL8 1130 aaKnown RBP20.82■□□□□ 0.92
CPSF1-211ENST00000533492 U2SURPO15042 1029 aaKnown RBP20.81■□□□□ 0.92
CPSF1-211ENST00000533492 UBR3Q6ZT12 1888 aa20.81■□□□□ 0.92
CPSF1-211ENST00000533492 PTCD1O75127 700 aaKnown RBP20.8■□□□□ 0.92
CPSF1-211ENST00000533492 NLGN2Q8NFZ4 835 aa20.8■□□□□ 0.92
CPSF1-211ENST00000533492 SLC4A9Q96Q91 983 aa20.8■□□□□ 0.92
CPSF1-211ENST00000533492 RTCBQ9Y3I0 505 aaKnown RBP20.8■□□□□ 0.92
CPSF1-211ENST00000533492 TRAPPC3LQ5T215 181 aa20.79■□□□□ 0.92
CPSF1-211ENST00000533492 MTHFSDQ2M296 383 aaKnown RBP20.78■□□□□ 0.92
CPSF1-211ENST00000533492 RC3H1Q5TC82 1133 aaKnown RBP20.78■□□□□ 0.92
CPSF1-211ENST00000533492 CFAP53Q96M91 514 aa20.78■□□□□ 0.92
CPSF1-211ENST00000533492 LGR6Q9HBX8 967 aa20.78■□□□□ 0.92
CPSF1-211ENST00000533492 CD2APQ9Y5K6 639 aa20.77■□□□□ 0.92
CPSF1-211ENST00000533492 RNMTO43148 476 aaKnown RBP20.76■□□□□ 0.91
CPSF1-211ENST00000533492 SLC52A2Q9HAB3 445 aa20.76■□□□□ 0.91
CPSF1-211ENST00000533492 SCN11AQ9UI33 1791 aa20.76■□□□□ 0.91
CPSF1-211ENST00000533492 CNTNAP4Q9C0A0 1308 aa20.76■□□□□ 0.91
CPSF1-211ENST00000533492 ZNF831Q5JPB2 1677 aa20.74■□□□□ 0.91
CPSF1-211ENST00000533492 RPS6KA4O75676 772 aa20.74■□□□□ 0.91
CPSF1-211ENST00000533492 ADRA2BP18089 450 aa20.74■□□□□ 0.91
CPSF1-211ENST00000533492 RFC4P35249 363 aa20.73■□□□□ 0.91
CPSF1-211ENST00000533492 ARHGEF1Q92888 912 aaKnown RBP20.73■□□□□ 0.91
CPSF1-211ENST00000533492 NUDCQ9Y266 331 aa20.73■□□□□ 0.91
CPSF1-211ENST00000533492 CHD4Q14839 1912 aa20.72■□□□□ 0.91
CPSF1-211ENST00000533492 NLGN1Q8N2Q7 840 aa20.72■□□□□ 0.91
CPSF1-211ENST00000533492 GAS2L2Q8NHY3 880 aa20.72■□□□□ 0.91
CPSF1-211ENST00000533492 COL3A1P02461 1466 aaPredicted RBP20.72■□□□□ 0.91
CPSF1-211ENST00000533492 GRIN3BO60391 1043 aa20.71■□□□□ 0.91
CPSF1-211ENST00000533492 CRKLP46109 303 aaKnown RBP20.71■□□□□ 0.91
CPSF1-211ENST00000533492 SLC39A6Q13433 755 aa20.71■□□□□ 0.91
CPSF1-211ENST00000533492 MMP10P09238 476 aa20.7■□□□□ 0.9
CPSF1-211ENST00000533492 PPP2R1AP30153 589 aa20.7■□□□□ 0.9
CPSF1-211ENST00000533492 COL5A3P25940 1745 aaPredicted RBP20.7■□□□□ 0.9
CPSF1-211ENST00000533492 GNAT3A8MTJ3 354 aa20.69■□□□□ 0.9
CPSF1-211ENST00000533492 UTRNP46939 3433 aa20.69■□□□□ 0.9
CPSF1-211ENST00000533492 YBX3P16989 372 aaKnown RBP eCLIP20.68■□□□□ 0.9
CPSF1-211ENST00000533492 DNAJC10Q8IXB1 793 aa20.68■□□□□ 0.9
CPSF1-211ENST00000533492 VIRMAQ69YN4 1812 aaKnown RBP20.67■□□□□ 0.9
CPSF1-211ENST00000533492 MYH14Q7Z406 1995 aaKnown RBP20.67■□□□□ 0.9
CPSF1-211ENST00000533492 U2AF1L5P0DN76 240 aaPredicted RBP20.67■□□□□ 0.9
CPSF1-211ENST00000533492 U2AF1Q01081 240 aaKnown RBP eCLIP20.67■□□□□ 0.9
CPSF1-211ENST00000533492 TEFQ10587 303 aa20.67■□□□□ 0.9
CPSF1-211ENST00000533492 ZNF784Q8NCA9 323 aaPredicted RBP20.67■□□□□ 0.9
CPSF1-211ENST00000533492 GYS1P13807 737 aa20.66■□□□□ 0.9
CPSF1-211ENST00000533492 PRKAR2BP31323 418 aa20.66■□□□□ 0.9
CPSF1-211ENST00000533492 TTC5Q8N0Z6 440 aa20.66■□□□□ 0.9
CPSF1-211ENST00000533492 MRC1P22897 1456 aa20.66■□□□□ 0.9
CPSF1-211ENST00000533492 RSPH6AQ9H0K4 717 aa20.65■□□□□ 0.9
CPSF1-211ENST00000533492 CCDC87Q9NVE4 849 aa20.65■□□□□ 0.9
CPSF1-211ENST00000533492 INTS5Q6P9B9 1019 aaKnown RBP20.64■□□□□ 0.89
CPSF1-211ENST00000533492 IL17REQ8NFR9 667 aa20.64■□□□□ 0.89
CPSF1-211ENST00000533492 PHACTR3Q96KR7 559 aa20.64■□□□□ 0.89
CPSF1-211ENST00000533492 PARP3Q9Y6F1 533 aa20.64■□□□□ 0.89
CPSF1-211ENST00000533492 CYP19A1P11511 503 aaPredicted RBP20.63■□□□□ 0.89
CPSF1-211ENST00000533492 VSIG10Q8N0Z9 540 aa20.63■□□□□ 0.89
CPSF1-211ENST00000533492 TJP1Q07157 1748 aa20.63■□□□□ 0.89
CPSF1-211ENST00000533492 ADAMTS7Q9UKP4 1686 aa20.62■□□□□ 0.89
CPSF1-211ENST00000533492 SRP68Q9UHB9 627 aaKnown RBP20.62■□□□□ 0.89
CPSF1-211ENST00000533492 WWC3Q9ULE0 1092 aa20.62■□□□□ 0.89
CPSF1-211ENST00000533492 ZPR1O75312 459 aa20.61■□□□□ 0.89
CPSF1-211ENST00000533492 FCHSD2O94868 740 aa20.61■□□□□ 0.89
CPSF1-211ENST00000533492 GOLGB1Q14789 3259 aaKnown RBP20.61■□□□□ 0.89
CPSF1-211ENST00000533492 USP42Q9H9J4 1324 aaKnown RBP20.6■□□□□ 0.89
CPSF1-211ENST00000533492 CICQ96RK0 1608 aaPredicted RBP20.6■□□□□ 0.89
CPSF1-211ENST00000533492 KCPQ6ZWJ8 1503 aa20.59■□□□□ 0.89
CPSF1-211ENST00000533492 STARD3NLO95772 234 aa20.59■□□□□ 0.89
CPSF1-211ENST00000533492 TGFB2P61812 414 aa20.59■□□□□ 0.89
CPSF1-211ENST00000533492 FKBP8Q14318 412 aa20.59■□□□□ 0.89
CPSF1-211ENST00000533492 ZNF790Q6PG37 636 aa20.59■□□□□ 0.89
CPSF1-211ENST00000533492 RTF1Q92541 710 aaKnown RBP20.59■□□□□ 0.89
CPSF1-211ENST00000533492 SOS1Q07889 1333 aaPredicted RBP20.58■□□□□ 0.89
CPSF1-211ENST00000533492 NEFMP07197 916 aa20.58■□□□□ 0.89
CPSF1-211ENST00000533492 TEX13AQ9BXU3 409 aaPredicted RBP20.58■□□□□ 0.89
CPSF1-211ENST00000533492 ZBTB1Q9Y2K1 713 aa20.58■□□□□ 0.89
CPSF1-211ENST00000533492 C4AP0C0L4 1744 aa20.58■□□□□ 0.88
CPSF1-211ENST00000533492 BTBD11A6QL63 1104 aa20.57■□□□□ 0.88
CPSF1-211ENST00000533492 CANXP27824 592 aaKnown RBP20.57■□□□□ 0.88
CPSF1-211ENST00000533492 USPL1Q5W0Q7 1092 aa20.57■□□□□ 0.88
CPSF1-211ENST00000533492 ZNF496Q96IT1 587 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-211ENST00000533492 A0A0G2JLW4 131 aa20.56■□□□□ 0.88
CPSF1-211ENST00000533492 FMNL2Q96PY5 1086 aa20.56■□□□□ 0.88
CPSF1-211ENST00000533492 NARFQ9UHQ1 456 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms