RNA–Protein interactions for RNA: ENST00000533440.1

NXF1-215, Transcript of nuclear RNA export factor 1, humanhuman

TSL 2

Gene NXF1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-215ENST00000533440 FLT4P35916 1363 aa11□□□□□ -0.65
NXF1-215ENST00000533440 NCAPD2Q15021 1401 aa11□□□□□ -0.65
NXF1-215ENST00000533440 C10orf71Q711Q0 1435 aa11□□□□□ -0.65
NXF1-215ENST00000533440 N4BP2Q86UW6 1770 aaPredicted RBP10.99□□□□□ -0.65
NXF1-215ENST00000533440 A0A0G2JLW4 131 aa10.99□□□□□ -0.65
NXF1-215ENST00000533440 GNPATO15228 680 aa10.99□□□□□ -0.65
NXF1-215ENST00000533440 GGNBP2Q9H3C7 697 aa10.99□□□□□ -0.65
NXF1-215ENST00000533440 SLC24A1O60721 1099 aa10.98□□□□□ -0.65
NXF1-215ENST00000533440 HTRA3P83110 453 aa10.98□□□□□ -0.65
NXF1-215ENST00000533440 FSTL1Q12841 308 aa10.98□□□□□ -0.65
NXF1-215ENST00000533440 ARHGAP27Q6ZUM4 889 aa10.98□□□□□ -0.65
NXF1-215ENST00000533440 ASAP1Q9ULH1 1129 aa10.98□□□□□ -0.65
NXF1-215ENST00000533440 BRCA1P38398 1863 aaKnown RBP10.98□□□□□ -0.65
NXF1-215ENST00000533440 ST20-MTHFSA0A0A6YYL1 179 aa10.97□□□□□ -0.65
NXF1-215ENST00000533440 DPEP1P16444 411 aa10.97□□□□□ -0.65
NXF1-215ENST00000533440 ATP6V1AP38606 617 aa10.97□□□□□ -0.65
NXF1-215ENST00000533440 NLGN1Q8N2Q7 840 aa10.97□□□□□ -0.65
NXF1-215ENST00000533440 PLEKHG2Q9H7P9 1386 aa10.97□□□□□ -0.65
NXF1-215ENST00000533440 FCHSD2O94868 740 aa10.96□□□□□ -0.65
NXF1-215ENST00000533440 KCNA3P22001 575 aa10.96□□□□□ -0.65
NXF1-215ENST00000533440 PRELPP51888 382 aa10.96□□□□□ -0.65
NXF1-215ENST00000533440 TMF1P82094 1093 aa10.96□□□□□ -0.65
NXF1-215ENST00000533440 TRAPPC3LQ5T215 181 aa10.96□□□□□ -0.65
NXF1-215ENST00000533440 C9orf131Q5VYM1 1079 aa10.96□□□□□ -0.65
NXF1-215ENST00000533440 ATG3Q9NT62 314 aa10.96□□□□□ -0.65
NXF1-215ENST00000533440 CCDC87Q9NVE4 849 aa10.96□□□□□ -0.65
NXF1-215ENST00000533440 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.96□□□□□ -0.65
NXF1-215ENST00000533440 TMOD3Q9NYL9 352 aa10.96□□□□□ -0.65
NXF1-215ENST00000533440 SPG7Q9UQ90 795 aa10.96□□□□□ -0.65
NXF1-215ENST00000533440 C4AP0C0L4 1744 aa10.95□□□□□ -0.66
NXF1-215ENST00000533440 KDRP35968 1356 aa10.95□□□□□ -0.66
NXF1-215ENST00000533440 TONSLQ96HA7 1378 aa10.95□□□□□ -0.66
NXF1-215ENST00000533440 NPM3O75607 178 aaKnown RBP10.95□□□□□ -0.66
NXF1-215ENST00000533440 C16orf71Q8IYS4 520 aaPredicted RBP10.95□□□□□ -0.66
NXF1-215ENST00000533440 RTCBQ9Y3I0 505 aaKnown RBP10.95□□□□□ -0.66
NXF1-215ENST00000533440 ARFGEF1Q9Y6D6 1849 aa10.95□□□□□ -0.66
NXF1-215ENST00000533440 KCPQ6ZWJ8 1503 aa10.94□□□□□ -0.66
NXF1-215ENST00000533440 GYS1P13807 737 aa10.94□□□□□ -0.66
NXF1-215ENST00000533440 PHKG2P15735 406 aa10.94□□□□□ -0.66
NXF1-215ENST00000533440 RC3H1Q5TC82 1133 aaKnown RBP10.94□□□□□ -0.66
NXF1-215ENST00000533440 IFNL2Q8IZJ0 200 aa10.94□□□□□ -0.66
NXF1-215ENST00000533440 TNS4Q8IZW8 715 aa10.94□□□□□ -0.66
NXF1-215ENST00000533440 ARHGEF1Q92888 912 aaKnown RBP10.94□□□□□ -0.66
NXF1-215ENST00000533440 DCAF5Q96JK2 942 aa10.94□□□□□ -0.66
NXF1-215ENST00000533440 SLC4A9Q96Q91 983 aa10.94□□□□□ -0.66
NXF1-215ENST00000533440 EMILIN1Q9Y6C2 1016 aa10.94□□□□□ -0.66
NXF1-215ENST00000533440 ZNF831Q5JPB2 1677 aa10.94□□□□□ -0.66
NXF1-215ENST00000533440 KDM2BQ8NHM5 1336 aa10.93□□□□□ -0.66
NXF1-215ENST00000533440 CAPN15O75808 1086 aa10.93□□□□□ -0.66
NXF1-215ENST00000533440 KIF20BQ96Q89 1820 aa10.93□□□□□ -0.66
NXF1-215ENST00000533440 CNTNAP4Q9C0A0 1308 aa10.92□□□□□ -0.66
NXF1-215ENST00000533440 RPS6KA4O75676 772 aa10.92□□□□□ -0.66
NXF1-215ENST00000533440 EYA1Q99502 592 aa10.92□□□□□ -0.66
NXF1-215ENST00000533440 RRAGCQ9HB90 399 aa10.92□□□□□ -0.66
NXF1-215ENST00000533440 PIM2Q9P1W9 311 aa10.92□□□□□ -0.66
NXF1-215ENST00000533440 PARP3Q9Y6F1 533 aa10.92□□□□□ -0.66
NXF1-215ENST00000533440 COL5A3P25940 1745 aaPredicted RBP10.92□□□□□ -0.66
NXF1-215ENST00000533440 WASHC2AQ641Q2 1341 aa10.91□□□□□ -0.66
NXF1-215ENST00000533440 RFC4P35249 363 aa10.91□□□□□ -0.66
NXF1-215ENST00000533440 SMC1BQ8NDV3 1235 aa10.91□□□□□ -0.66
NXF1-215ENST00000533440 RNF181Q9P0P0 153 aa10.91□□□□□ -0.66
NXF1-215ENST00000533440 ANKRD26Q9UPS8 1709 aa10.91□□□□□ -0.66
NXF1-215ENST00000533440 TNRC6CQ9HCJ0 1690 aaKnown RBP10.91□□□□□ -0.66
NXF1-215ENST00000533440 SBF1O95248 1867 aa10.9□□□□□ -0.66
NXF1-215ENST00000533440 DALRD3Q5D0E6 543 aaKnown RBP10.9□□□□□ -0.66
NXF1-215ENST00000533440 ZC3H4Q9UPT8 1303 aaKnown RBP10.89□□□□□ -0.67
NXF1-215ENST00000533440 MYH14Q7Z406 1995 aaKnown RBP10.89□□□□□ -0.67
NXF1-215ENST00000533440 ERVV-2B6SEH9 535 aa10.89□□□□□ -0.67
NXF1-215ENST00000533440 RBM42Q9BTD8 480 aaKnown RBP10.89□□□□□ -0.67
NXF1-215ENST00000533440 CARD14Q9BXL6 1004 aa10.89□□□□□ -0.67
NXF1-215ENST00000533440 KDM6AO15550 1401 aaPredicted RBP10.88□□□□□ -0.67
NXF1-215ENST00000533440 HSPA1AP0DMV8 641 aaKnown RBP10.88□□□□□ -0.67
NXF1-215ENST00000533440 HSPA1BP0DMV9 641 aaKnown RBP10.88□□□□□ -0.67
NXF1-215ENST00000533440 DDR1Q08345 913 aa10.88□□□□□ -0.67
NXF1-215ENST00000533440 RNF216Q9NWF9 866 aaPredicted RBP10.88□□□□□ -0.67
NXF1-215ENST00000533440 PPM1GO15355 546 aaPredicted RBP10.87□□□□□ -0.67
NXF1-215ENST00000533440 CHRNA5P30532 468 aa10.87□□□□□ -0.67
NXF1-215ENST00000533440 FKBP8Q14318 412 aa10.87□□□□□ -0.67
NXF1-215ENST00000533440 USP42Q9H9J4 1324 aaKnown RBP10.86□□□□□ -0.67
NXF1-215ENST00000533440 HSP90AB1P08238 724 aaKnown RBP10.86□□□□□ -0.67
NXF1-215ENST00000533440 TM4SF1P30408 202 aa10.86□□□□□ -0.67
NXF1-215ENST00000533440 POLKQ9UBT6 870 aa10.86□□□□□ -0.67
NXF1-215ENST00000533440 SRP68Q9UHB9 627 aaKnown RBP10.86□□□□□ -0.67
NXF1-215ENST00000533440 GLTPD2A6NH11 291 aa10.85□□□□□ -0.67
NXF1-215ENST00000533440 POLRMTO00411 1230 aaKnown RBP10.85□□□□□ -0.67
NXF1-215ENST00000533440 VEGFAP15692 232 aaPredicted RBP10.85□□□□□ -0.67
NXF1-215ENST00000533440 CRKLP46109 303 aaKnown RBP10.85□□□□□ -0.67
NXF1-215ENST00000533440 EIF4A2Q14240 407 aaKnown RBP10.85□□□□□ -0.67
NXF1-215ENST00000533440 CDCA8Q53HL2 280 aa10.85□□□□□ -0.67
NXF1-215ENST00000533440 LMNB1P20700 586 aa10.84□□□□□ -0.67
NXF1-215ENST00000533440 RASSF7Q02833 373 aa10.84□□□□□ -0.67
NXF1-215ENST00000533440 ADAMTS7Q9UKP4 1686 aa10.84□□□□□ -0.67
NXF1-215ENST00000533440 CABP4P57796 275 aa10.83□□□□□ -0.68
NXF1-215ENST00000533440 TJP1Q07157 1748 aa10.82□□□□□ -0.68
NXF1-215ENST00000533440 POTECB2RU33 542 aa10.82□□□□□ -0.68
NXF1-215ENST00000533440 PTCD1O75127 700 aaKnown RBP10.82□□□□□ -0.68
NXF1-215ENST00000533440 PLEKHO1Q53GL0 409 aaPredicted RBP10.82□□□□□ -0.68
NXF1-215ENST00000533440 INTS5Q6P9B9 1019 aaKnown RBP10.82□□□□□ -0.68
NXF1-215ENST00000533440 AMOTQ4VCS5 1084 aa10.81□□□□□ -0.68
NXF1-215ENST00000533440 ZNF530Q6P9A1 599 aaPredicted RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms