RNA–Protein interactions for RNA: ENST00000532793.1

PPFIA1-223, Transcript of PTPRF interacting protein alpha 1, human

TSL 3

Gene PPFIA1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPFIA1-223	ENST00000532793	FBLN1	P23142	703 aa		13.36	□□□□□ -0.27
PPFIA1-223	ENST00000532793	MARVELD3	Q96A59	401 aa		13.36	□□□□□ -0.27
PPFIA1-223	ENST00000532793	TIMELESS	Q9UNS1	1208 aa		13.36	□□□□□ -0.27
PPFIA1-223	ENST00000532793	FLT4	P35916	1363 aa		13.35	□□□□□ -0.27
PPFIA1-223	ENST00000532793	MEGF6	O75095	1541 aa		13.35	□□□□□ -0.27
PPFIA1-223	ENST00000532793	TAT	P17735	454 aa	Predicted RBP	13.35	□□□□□ -0.27
PPFIA1-223	ENST00000532793	PRIM1	P49642	420 aa	Known RBP	13.35	□□□□□ -0.27
PPFIA1-223	ENST00000532793	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.35	□□□□□ -0.27
PPFIA1-223	ENST00000532793	MAP2	P11137	1827 aa	Known RBP	13.34	□□□□□ -0.27
PPFIA1-223	ENST00000532793	KIF24	Q5T7B8	1368 aa		13.34	□□□□□ -0.27
PPFIA1-223	ENST00000532793	HMGB2	P26583	209 aa	Known RBP	13.34	□□□□□ -0.27
PPFIA1-223	ENST00000532793	PTGER2	P43116	358 aa		13.34	□□□□□ -0.27
PPFIA1-223	ENST00000532793	PCGF6	Q9BYE7	350 aa		13.34	□□□□□ -0.27
PPFIA1-223	ENST00000532793	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.34	□□□□□ -0.27
PPFIA1-223	ENST00000532793	TFCP2L1	Q9NZI6	479 aa		13.34	□□□□□ -0.27
PPFIA1-223	ENST00000532793	CHD4	Q14839	1912 aa		13.34	□□□□□ -0.27
PPFIA1-223	ENST00000532793	PCDH11X	Q9BZA7	1347 aa		13.34	□□□□□ -0.27
PPFIA1-223	ENST00000532793	PCDH11Y	Q9BZA8	1340 aa		13.34	□□□□□ -0.27
PPFIA1-223	ENST00000532793	TUBGCP6	Q96RT7	1819 aa		13.34	□□□□□ -0.27
PPFIA1-223	ENST00000532793	INSR	P06213	1382 aa		13.33	□□□□□ -0.27
PPFIA1-223	ENST00000532793	NSD3	Q9BZ95	1437 aa		13.33	□□□□□ -0.28
PPFIA1-223	ENST00000532793	POLD1	P28340	1107 aa		13.33	□□□□□ -0.28
PPFIA1-223	ENST00000532793	ZNF827	Q17R98	1081 aa		13.33	□□□□□ -0.28
PPFIA1-223	ENST00000532793	NBPF6	Q5VWK0	638 aa		13.33	□□□□□ -0.28
PPFIA1-223	ENST00000532793	RASEF	Q8IZ41	740 aa		13.33	□□□□□ -0.28
PPFIA1-223	ENST00000532793	KLHL34	Q8N239	644 aa		13.33	□□□□□ -0.28
PPFIA1-223	ENST00000532793	USHBP1	Q8N6Y0	703 aa		13.33	□□□□□ -0.28
PPFIA1-223	ENST00000532793	NBPF4	Q96M43	638 aa		13.33	□□□□□ -0.28
PPFIA1-223	ENST00000532793	ARX	Q96QS3	562 aa		13.33	□□□□□ -0.28
PPFIA1-223	ENST00000532793	POLR3GL	Q9BT43	218 aa		13.33	□□□□□ -0.28
PPFIA1-223	ENST00000532793	CLSPN	Q9HAW4	1339 aa		13.33	□□□□□ -0.28
PPFIA1-223	ENST00000532793	PPM1G	O15355	546 aa	Predicted RBP	13.32	□□□□□ -0.28
PPFIA1-223	ENST00000532793	SLC16A10	Q8TF71	515 aa		13.32	□□□□□ -0.28
PPFIA1-223	ENST00000532793	SYT17	Q9BSW7	474 aa		13.32	□□□□□ -0.28
PPFIA1-223	ENST00000532793	LRRC4B	Q9NT99	713 aa		13.32	□□□□□ -0.28
PPFIA1-223	ENST00000532793	CCNL1	Q9UK58	526 aa	Predicted RBP	13.32	□□□□□ -0.28
PPFIA1-223	ENST00000532793	C5	P01031	1676 aa		13.31	□□□□□ -0.28
PPFIA1-223	ENST00000532793	ANKRD26	Q9UPS8	1709 aa		13.31	□□□□□ -0.28
PPFIA1-223	ENST00000532793	HSP90AB2P	Q58FF8	381 aa		13.31	□□□□□ -0.28
PPFIA1-223	ENST00000532793	ITGB4	P16144	1822 aa		13.3	□□□□□ -0.28
PPFIA1-223	ENST00000532793	PKD1L3	Q7Z443	1732 aa		13.3	□□□□□ -0.28
PPFIA1-223	ENST00000532793	TAF1L	Q8IZX4	1826 aa		13.28	□□□□□ -0.28
PPFIA1-223	ENST00000532793	KCNQ4	P56696	695 aa		13.28	□□□□□ -0.28
PPFIA1-223	ENST00000532793	SGIP1	Q9BQI5	828 aa		13.28	□□□□□ -0.28
PPFIA1-223	ENST00000532793	EMILIN1	Q9Y6C2	1016 aa		13.28	□□□□□ -0.28
PPFIA1-223	ENST00000532793	PNPLA7	Q6ZV29	1317 aa		13.28	□□□□□ -0.28
PPFIA1-223	ENST00000532793	NSD2	O96028	1365 aa		13.28	□□□□□ -0.28
PPFIA1-223	ENST00000532793	COL24A1	Q17RW2	1714 aa		13.27	□□□□□ -0.28
PPFIA1-223	ENST00000532793	CARD14	Q9BXL6	1004 aa		13.27	□□□□□ -0.29
PPFIA1-223	ENST00000532793	SPG7	Q9UQ90	795 aa		13.27	□□□□□ -0.29
PPFIA1-223	ENST00000532793	MAP3K5	Q99683	1374 aa		13.27	□□□□□ -0.29
PPFIA1-223	ENST00000532793	GPR162	Q16538	588 aa		13.26	□□□□□ -0.29
PPFIA1-223	ENST00000532793	MPRIP	Q6WCQ1	1025 aa		13.26	□□□□□ -0.29
PPFIA1-223	ENST00000532793	KRTAP3-3	Q9BYR6	98 aa		13.26	□□□□□ -0.29
PPFIA1-223	ENST00000532793	KRTAP3-2	Q9BYR7	98 aa		13.26	□□□□□ -0.29
PPFIA1-223	ENST00000532793	TOGARAM1	Q9Y4F4	1720 aa		13.25	□□□□□ -0.29
PPFIA1-223	ENST00000532793	PALLD	Q8WX93	1383 aa		13.25	□□□□□ -0.29
PPFIA1-223	ENST00000532793	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.25	□□□□□ -0.29
PPFIA1-223	ENST00000532793	SMARCC1	Q92922	1105 aa	Predicted RBP	13.25	□□□□□ -0.29
PPFIA1-223	ENST00000532793	FLAD1	Q8NFF5	587 aa		13.24	□□□□□ -0.29
PPFIA1-223	ENST00000532793	CCER1	Q8TC90	406 aa	Predicted RBP	13.24	□□□□□ -0.29
PPFIA1-223	ENST00000532793	WASHC2A	Q641Q2	1341 aa		13.23	□□□□□ -0.29
PPFIA1-223	ENST00000532793	C4B	P0C0L5	1744 aa		13.23	□□□□□ -0.29
PPFIA1-223	ENST00000532793	POTEB3	A0JP26	581 aa		13.23	□□□□□ -0.29
PPFIA1-223	ENST00000532793	TNNT2	P45379	298 aa	Predicted RBP	13.23	□□□□□ -0.29
PPFIA1-223	ENST00000532793	IRX5	P78411	483 aa	Predicted RBP	13.23	□□□□□ -0.29
PPFIA1-223	ENST00000532793	POTEB	Q6S5H4	581 aa		13.23	□□□□□ -0.29
PPFIA1-223	ENST00000532793	CYP27B1	O15528	508 aa		13.22	□□□□□ -0.29
PPFIA1-223	ENST00000532793	AK7	Q96M32	723 aa		13.22	□□□□□ -0.29
PPFIA1-223	ENST00000532793	COL23A1	Q86Y22	540 aa	Predicted RBP	13.21	□□□□□ -0.29
PPFIA1-223	ENST00000532793	TMOD3	Q9NYL9	352 aa		13.21	□□□□□ -0.29
PPFIA1-223	ENST00000532793	NCAPD2	Q15021	1401 aa		13.21	□□□□□ -0.3
PPFIA1-223	ENST00000532793	IFNL2	Q8IZJ0	200 aa		13.2	□□□□□ -0.3
PPFIA1-223	ENST00000532793	EYA1	Q99502	592 aa		13.2	□□□□□ -0.3
PPFIA1-223	ENST00000532793	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.2	□□□□□ -0.3	1e-7	■■□□□ 13.2
PPFIA1-223	ENST00000532793	POLK	Q9UBT6	870 aa		13.2	□□□□□ -0.3
PPFIA1-223	ENST00000532793	PCDHB13	Q9Y5F0	798 aa		13.2	□□□□□ -0.3
PPFIA1-223	ENST00000532793	UBR3	Q6ZT12	1888 aa		13.2	□□□□□ -0.3
PPFIA1-223	ENST00000532793	HSPA5	P11021	654 aa	Known RBP	13.19	□□□□□ -0.3
PPFIA1-223	ENST00000532793	PLCG2	P16885	1265 aa		13.19	□□□□□ -0.3
PPFIA1-223	ENST00000532793	MSL1	Q68DK7	614 aa		13.19	□□□□□ -0.3
PPFIA1-223	ENST00000532793	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.19	□□□□□ -0.3
PPFIA1-223	ENST00000532793	NKX1-1	Q15270	411 aa	Predicted RBP	13.18	□□□□□ -0.3
PPFIA1-223	ENST00000532793	PANK3	Q9H999	370 aa		13.18	□□□□□ -0.3
PPFIA1-223	ENST00000532793	PLEKHG2	Q9H7P9	1386 aa		13.18	□□□□□ -0.3
PPFIA1-223	ENST00000532793	PHF14	O94880	888 aa		13.17	□□□□□ -0.3
PPFIA1-223	ENST00000532793	EIF4A2	Q14240	407 aa	Known RBP	13.17	□□□□□ -0.3
PPFIA1-223	ENST00000532793	PIGB	Q92521	554 aa		13.17	□□□□□ -0.3
PPFIA1-223	ENST00000532793	LOC102724428	A0A0B4J2F2	783 aa		13.16	□□□□□ -0.3
PPFIA1-223	ENST00000532793	GRIN3B	O60391	1043 aa		13.16	□□□□□ -0.3
PPFIA1-223	ENST00000532793	HSP90AB1	P08238	724 aa	Known RBP	13.16	□□□□□ -0.3
PPFIA1-223	ENST00000532793	PHKG2	P15735	406 aa		13.16	□□□□□ -0.3
PPFIA1-223	ENST00000532793	SIK1	P57059	783 aa		13.16	□□□□□ -0.3
PPFIA1-223	ENST00000532793	MORC1	Q86VD1	984 aa		13.16	□□□□□ -0.3
PPFIA1-223	ENST00000532793	IFNL1	Q8IU54	200 aa		13.16	□□□□□ -0.3
PPFIA1-223	ENST00000532793	NLGN2	Q8NFZ4	835 aa		13.16	□□□□□ -0.3
PPFIA1-223	ENST00000532793	ATP6V1A	P38606	617 aa		13.15	□□□□□ -0.3
PPFIA1-223	ENST00000532793	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.15	□□□□□ -0.3
PPFIA1-223	ENST00000532793	KNSTRN	Q9Y448	316 aa		13.15	□□□□□ -0.3
PPFIA1-223	ENST00000532793	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms