RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 MTHFSP49914 203 aa20.04■□□□□ 0.8
VPS28-215ENST00000531924 SULT6B1Q6IMI4 303 aa20.04■□□□□ 0.8
VPS28-215ENST00000531924 RBM42Q9BTD8 480 aaKnown RBP20.04■□□□□ 0.8
VPS28-215ENST00000531924 CD2APQ9Y5K6 639 aa20.04■□□□□ 0.8
VPS28-215ENST00000531924 ITPK1Q13572 414 aa20.03■□□□□ 0.8
VPS28-215ENST00000531924 AEBP1Q8IUX7 1158 aa20.03■□□□□ 0.8
VPS28-215ENST00000531924 KIF7Q2M1P5 1343 aa20.02■□□□□ 0.8
VPS28-215ENST00000531924 SMIM5Q71RC9 77 aa20.02■□□□□ 0.8
VPS28-215ENST00000531924 COL24A1Q17RW2 1714 aa20.02■□□□□ 0.79
VPS28-215ENST00000531924 AMIGO3Q86WK7 504 aa20.01■□□□□ 0.79
VPS28-215ENST00000531924 AMER1Q5JTC6 1135 aaPredicted RBP20■□□□□ 0.79
VPS28-215ENST00000531924 RTCBQ9Y3I0 505 aaKnown RBP20■□□□□ 0.79
VPS28-215ENST00000531924 TAF1LQ8IZX4 1826 aa19.99■□□□□ 0.79
VPS28-215ENST00000531924 UTRNP46939 3433 aa19.99■□□□□ 0.79
VPS28-215ENST00000531924 IL13P35225 146 aa19.99■□□□□ 0.79
VPS28-215ENST00000531924 TRAPPC3LQ5T215 181 aa19.99■□□□□ 0.79
VPS28-215ENST00000531924 YBX3P16989 372 aaKnown RBP eCLIP19.97■□□□□ 0.791e-7■□□□□ 9.8
VPS28-215ENST00000531924 CC2D1BQ5T0F9 858 aaKnown RBP19.97■□□□□ 0.79
VPS28-215ENST00000531924 PTCD1O75127 700 aaKnown RBP19.96■□□□□ 0.79
VPS28-215ENST00000531924 NFATC2IPQ8NCF5 419 aa19.96■□□□□ 0.79
VPS28-215ENST00000531924 CHD4Q14839 1912 aa19.96■□□□□ 0.79
VPS28-215ENST00000531924 KDM6AO15550 1401 aaPredicted RBP19.95■□□□□ 0.78
VPS28-215ENST00000531924 CNGB1Q14028 1251 aaPredicted RBP19.95■□□□□ 0.78
VPS28-215ENST00000531924 MMP10P09238 476 aa19.94■□□□□ 0.78
VPS28-215ENST00000531924 ADRA2BP18089 450 aa19.94■□□□□ 0.78
VPS28-215ENST00000531924 RFC4P35249 363 aa19.94■□□□□ 0.78
VPS28-215ENST00000531924 RC3H1Q5TC82 1133 aaKnown RBP19.94■□□□□ 0.78
VPS28-215ENST00000531924 KDRP35968 1356 aa19.94■□□□□ 0.78
VPS28-215ENST00000531924 DIAPH1O60610 1272 aaKnown RBP19.93■□□□□ 0.78
VPS28-215ENST00000531924 HMOX1P09601 288 aa19.93■□□□□ 0.78
VPS28-215ENST00000531924 AKAP4Q5JQC9 854 aa19.93■□□□□ 0.78
VPS28-215ENST00000531924 NLGN1Q8N2Q7 840 aa19.93■□□□□ 0.78
VPS28-215ENST00000531924 SLC4A9Q96Q91 983 aa19.93■□□□□ 0.78
VPS28-215ENST00000531924 UBR3Q6ZT12 1888 aa19.92■□□□□ 0.78
VPS28-215ENST00000531924 CNTNAP4Q9C0A0 1308 aa19.92■□□□□ 0.78
VPS28-215ENST00000531924 GOLGB1Q14789 3259 aaKnown RBP19.92■□□□□ 0.78
VPS28-215ENST00000531924 RPS6KA4O75676 772 aa19.91■□□□□ 0.78
VPS28-215ENST00000531924 ARHGEF1Q92888 912 aaKnown RBP19.91■□□□□ 0.78
VPS28-215ENST00000531924 WWC3Q9ULE0 1092 aa19.91■□□□□ 0.78
VPS28-215ENST00000531924 PER1O15534 1290 aaPredicted RBP19.9■□□□□ 0.78
VPS28-215ENST00000531924 GIGYF1O75420 1035 aaPredicted RBP19.9■□□□□ 0.78
VPS28-215ENST00000531924 C1QTNF8P60827 252 aa19.88■□□□□ 0.77
VPS28-215ENST00000531924 PARP3Q9Y6F1 533 aa19.88■□□□□ 0.77
VPS28-215ENST00000531924 CRKLP46109 303 aaKnown RBP19.87■□□□□ 0.77
VPS28-215ENST00000531924 SLC52A2Q9HAB3 445 aa19.87■□□□□ 0.77
VPS28-215ENST00000531924 CCDC87Q9NVE4 849 aa19.87■□□□□ 0.77
VPS28-215ENST00000531924 U2SURPO15042 1029 aaKnown RBP19.86■□□□□ 0.77
VPS28-215ENST00000531924 LGR6Q9HBX8 967 aa19.86■□□□□ 0.77
VPS28-215ENST00000531924 RNMTO43148 476 aaKnown RBP19.85■□□□□ 0.77
VPS28-215ENST00000531924 GYS1P13807 737 aa19.85■□□□□ 0.77
VPS28-215ENST00000531924 ZNF831Q5JPB2 1677 aa19.84■□□□□ 0.77
VPS28-215ENST00000531924 SENP3-EIF4A1A0A087X0R7 540 aa19.84■□□□□ 0.77
VPS28-215ENST00000531924 TGFB2P61812 414 aa19.84■□□□□ 0.77
VPS28-215ENST00000531924 MTHFSDQ2M296 383 aaKnown RBP19.84■□□□□ 0.77
VPS28-215ENST00000531924 NPC1L1Q9UHC9 1359 aa19.83■□□□□ 0.76
VPS28-215ENST00000531924 CFAP53Q96M91 514 aa19.82■□□□□ 0.76
VPS28-215ENST00000531924 A0A0G2JLW4 131 aa19.81■□□□□ 0.76
VPS28-215ENST00000531924 ZPR1O75312 459 aa19.81■□□□□ 0.76
VPS28-215ENST00000531924 SLC39A6Q13433 755 aa19.81■□□□□ 0.76
VPS28-215ENST00000531924 DNAJC10Q8IXB1 793 aa19.81■□□□□ 0.76
VPS28-215ENST00000531924 GPBP1L1Q9HC44 474 aaPredicted RBP19.81■□□□□ 0.76
VPS28-215ENST00000531924 SRP68Q9UHB9 627 aaKnown RBP19.81■□□□□ 0.76
VPS28-215ENST00000531924 BCS1LQ9Y276 419 aa19.81■□□□□ 0.76
VPS28-215ENST00000531924 ATP10DQ9P241 1426 aa19.81■□□□□ 0.76
VPS28-215ENST00000531924 CICQ96RK0 1608 aaPredicted RBP19.8■□□□□ 0.76
VPS28-215ENST00000531924 TTC5Q8N0Z6 440 aa19.8■□□□□ 0.76
VPS28-215ENST00000531924 ZNF526Q8TF50 670 aaPredicted RBP19.8■□□□□ 0.76
VPS28-215ENST00000531924 COL5A3P25940 1745 aaPredicted RBP19.79■□□□□ 0.76
VPS28-215ENST00000531924 INTS5Q6P9B9 1019 aaKnown RBP19.79■□□□□ 0.76
VPS28-215ENST00000531924 GAS2L2Q8NHY3 880 aa19.79■□□□□ 0.76
VPS28-215ENST00000531924 USP42Q9H9J4 1324 aaKnown RBP19.78■□□□□ 0.76
VPS28-215ENST00000531924 DPEP1P16444 411 aa19.78■□□□□ 0.76
VPS28-215ENST00000531924 TEFQ10587 303 aa19.78■□□□□ 0.76
VPS28-215ENST00000531924 FKBP8Q14318 412 aa19.78■□□□□ 0.76
VPS28-215ENST00000531924 SCN11AQ9UI33 1791 aa19.78■□□□□ 0.76
VPS28-215ENST00000531924 C10orf71Q711Q0 1435 aa19.77■□□□□ 0.76
VPS28-215ENST00000531924 GNAT3A8MTJ3 354 aa19.77■□□□□ 0.76
VPS28-215ENST00000531924 FCHSD2O94868 740 aa19.77■□□□□ 0.76
VPS28-215ENST00000531924 NUDCQ9Y266 331 aa19.77■□□□□ 0.76
VPS28-215ENST00000531924 PXDNLA1KZ92 1463 aa19.77■□□□□ 0.76
VPS28-215ENST00000531924 CYP19A1P11511 503 aaPredicted RBP19.76■□□□□ 0.75
VPS28-215ENST00000531924 ARHGAP27Q6ZUM4 889 aa19.76■□□□□ 0.75
VPS28-215ENST00000531924 VSIG10Q8N0Z9 540 aa19.76■□□□□ 0.75
VPS28-215ENST00000531924 STARD3NLO95772 234 aa19.75■□□□□ 0.75
VPS28-215ENST00000531924 USPL1Q5W0Q7 1092 aa19.75■□□□□ 0.75
VPS28-215ENST00000531924 SOS1Q07889 1333 aaPredicted RBP19.75■□□□□ 0.75
VPS28-215ENST00000531924 MRC1P22897 1456 aa19.74■□□□□ 0.75
VPS28-215ENST00000531924 C4AP0C0L4 1744 aa19.74■□□□□ 0.75
VPS28-215ENST00000531924 DDR1Q08345 913 aa19.73■□□□□ 0.75
VPS28-215ENST00000531924 PIM2Q9P1W9 311 aa19.73■□□□□ 0.75
VPS28-215ENST00000531924 MYH14Q7Z406 1995 aaKnown RBP19.73■□□□□ 0.75
VPS28-215ENST00000531924 CANXP27824 592 aaKnown RBP19.72■□□□□ 0.75
VPS28-215ENST00000531924 TJP1Q07157 1748 aa19.72■□□□□ 0.75
VPS28-215ENST00000531924 DALRD3Q5D0E6 543 aaKnown RBP19.72■□□□□ 0.75
VPS28-215ENST00000531924 NARFQ9UHQ1 456 aa19.72■□□□□ 0.75
VPS28-215ENST00000531924 ZBTB1Q9Y2K1 713 aa19.72■□□□□ 0.75
VPS28-215ENST00000531924 COL3A1P02461 1466 aaPredicted RBP19.72■□□□□ 0.75
VPS28-215ENST00000531924 ADCY9O60503 1353 aa19.71■□□□□ 0.75
VPS28-215ENST00000531924 PRKAR2BP31323 418 aa19.71■□□□□ 0.75
VPS28-215ENST00000531924 NPM2Q86SE8 214 aaKnown RBP19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms