RNA–Protein interactions for RNA: ENST00000531842.1

USF1-210, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-210ENST00000531842 SMARCC1Q92922 1105 aaPredicted RBP12.6□□□□□ -0.39
USF1-210ENST00000531842 PUS7Q96PZ0 661 aaKnown RBP12.6□□□□□ -0.39
USF1-210ENST00000531842 SLC4A9Q96Q91 983 aa12.6□□□□□ -0.39
USF1-210ENST00000531842 SBF1O95248 1867 aa12.59□□□□□ -0.39
USF1-210ENST00000531842 DPEP1P16444 411 aa12.59□□□□□ -0.39
USF1-210ENST00000531842 CARD14Q9BXL6 1004 aa12.59□□□□□ -0.39
USF1-210ENST00000531842 ATG3Q9NT62 314 aa12.59□□□□□ -0.39
USF1-210ENST00000531842 ARFGEF1Q9Y6D6 1849 aa12.59□□□□□ -0.39
USF1-210ENST00000531842 APLP1P51693 650 aa12.58□□□□□ -0.4
USF1-210ENST00000531842 COL13A1Q5TAT6 717 aaPredicted RBP12.58□□□□□ -0.4
USF1-210ENST00000531842 TMOD3Q9NYL9 352 aa12.58□□□□□ -0.4
USF1-210ENST00000531842 NCAPD2Q15021 1401 aa12.57□□□□□ -0.4
USF1-210ENST00000531842 C10orf71Q711Q0 1435 aa12.57□□□□□ -0.4
USF1-210ENST00000531842 NKX1-1Q15270 411 aaPredicted RBP12.57□□□□□ -0.4
USF1-210ENST00000531842 EYA1Q99502 592 aa12.57□□□□□ -0.4
USF1-210ENST00000531842 CCDC88AQ3V6T2 1871 aa12.57□□□□□ -0.4
USF1-210ENST00000531842 KCPQ6ZWJ8 1503 aa12.57□□□□□ -0.4
USF1-210ENST00000531842 NSD3Q9BZ95 1437 aa12.56□□□□□ -0.4
USF1-210ENST00000531842 TOMM70O94826 608 aa12.56□□□□□ -0.4
USF1-210ENST00000531842 FCHSD2O94868 740 aa12.56□□□□□ -0.4
USF1-210ENST00000531842 PHKG2P15735 406 aa12.56□□□□□ -0.4
USF1-210ENST00000531842 RBM42Q9BTD8 480 aaKnown RBP12.56□□□□□ -0.4
USF1-210ENST00000531842 KDRP35968 1356 aa12.56□□□□□ -0.4
USF1-210ENST00000531842 KCNA3P22001 575 aa12.55□□□□□ -0.4
USF1-210ENST00000531842 C9orf131Q5VYM1 1079 aa12.55□□□□□ -0.4
USF1-210ENST00000531842 ARHGEF1Q92888 912 aaKnown RBP12.55□□□□□ -0.4
USF1-210ENST00000531842 SPG7Q9UQ90 795 aa12.55□□□□□ -0.4
USF1-210ENST00000531842 GYS1P13807 737 aa12.54□□□□□ -0.4
USF1-210ENST00000531842 TNNT2P45379 298 aaPredicted RBP12.54□□□□□ -0.4
USF1-210ENST00000531842 SRP68Q9UHB9 627 aaKnown RBP12.54□□□□□ -0.4
USF1-210ENST00000531842 CHRNA5P30532 468 aa12.53□□□□□ -0.4
USF1-210ENST00000531842 TMF1P82094 1093 aa12.53□□□□□ -0.4
USF1-210ENST00000531842 TRAPPC3LQ5T215 181 aa12.53□□□□□ -0.4
USF1-210ENST00000531842 TJP1Q07157 1748 aa12.53□□□□□ -0.4
USF1-210ENST00000531842 TGFB2P61812 414 aa12.52□□□□□ -0.41
USF1-210ENST00000531842 RRAGCQ9HB90 399 aa12.52□□□□□ -0.41
USF1-210ENST00000531842 RTCBQ9Y3I0 505 aaKnown RBP12.52□□□□□ -0.41
USF1-210ENST00000531842 AFDNP55196 1824 aaKnown RBP12.52□□□□□ -0.41
USF1-210ENST00000531842 ADAMTS7Q9UKP4 1686 aa12.51□□□□□ -0.41
USF1-210ENST00000531842 DDR1Q08345 913 aa12.51□□□□□ -0.41
USF1-210ENST00000531842 EIF4A2Q14240 407 aaKnown RBP12.51□□□□□ -0.41
USF1-210ENST00000531842 IFNL2Q8IZJ0 200 aa12.51□□□□□ -0.41
USF1-210ENST00000531842 KLRG1Q96E93 195 aa12.51□□□□□ -0.41
USF1-210ENST00000531842 KDM6AO15550 1401 aaPredicted RBP12.51□□□□□ -0.41
USF1-210ENST00000531842 ZNF831Q5JPB2 1677 aa12.51□□□□□ -0.41
USF1-210ENST00000531842 VIRMAQ69YN4 1812 aaKnown RBP12.51□□□□□ -0.41
USF1-210ENST00000531842 PTCD1O75127 700 aaKnown RBP12.5□□□□□ -0.41
USF1-210ENST00000531842 RASSF7Q02833 373 aa12.5□□□□□ -0.41
USF1-210ENST00000531842 FKBP8Q14318 412 aa12.5□□□□□ -0.41
USF1-210ENST00000531842 NLGN1Q8N2Q7 840 aa12.5□□□□□ -0.41
USF1-210ENST00000531842 CCDC87Q9NVE4 849 aa12.5□□□□□ -0.41
USF1-210ENST00000531842 RNF181Q9P0P0 153 aa12.5□□□□□ -0.41
USF1-210ENST00000531842 POLKQ9UBT6 870 aa12.5□□□□□ -0.41
USF1-210ENST00000531842 PARP3Q9Y6F1 533 aa12.5□□□□□ -0.41
USF1-210ENST00000531842 WASHC2AQ641Q2 1341 aa12.5□□□□□ -0.41
USF1-210ENST00000531842 KIF24Q5T7B8 1368 aa12.5□□□□□ -0.41
USF1-210ENST00000531842 TNRC6CQ9HCJ0 1690 aaKnown RBP12.5□□□□□ -0.41
USF1-210ENST00000531842 RFC4P35249 363 aa12.49□□□□□ -0.41
USF1-210ENST00000531842 PRELPP51888 382 aa12.49□□□□□ -0.41
USF1-210ENST00000531842 RBM46Q8TBY0 533 aaKnown RBP12.49□□□□□ -0.41
USF1-210ENST00000531842 TIAM2Q8IVF5 1701 aa12.48□□□□□ -0.41
USF1-210ENST00000531842 RPS6KA4O75676 772 aa12.48□□□□□ -0.41
USF1-210ENST00000531842 C16orf71Q8IYS4 520 aaPredicted RBP12.48□□□□□ -0.41
USF1-210ENST00000531842 CRKLP46109 303 aaKnown RBP12.47□□□□□ -0.41
USF1-210ENST00000531842 AEBP1Q8IUX7 1158 aa12.47□□□□□ -0.41
USF1-210ENST00000531842 JMYQ8N9B5 988 aa12.47□□□□□ -0.41
USF1-210ENST00000531842 DCAF5Q96JK2 942 aa12.47□□□□□ -0.41
USF1-210ENST00000531842 POLR3GLQ9BT43 218 aa12.47□□□□□ -0.41
USF1-210ENST00000531842 SCN11AQ9UI33 1791 aa12.46□□□□□ -0.41
USF1-210ENST00000531842 CNTNAP4Q9C0A0 1308 aa12.46□□□□□ -0.41
USF1-210ENST00000531842 DALRD3Q5D0E6 543 aaKnown RBP12.46□□□□□ -0.41
USF1-210ENST00000531842 TNS4Q8IZW8 715 aa12.46□□□□□ -0.41
USF1-210ENST00000531842 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.46□□□□□ -0.41
USF1-210ENST00000531842 PIM2Q9P1W9 311 aa12.46□□□□□ -0.41
USF1-210ENST00000531842 CACNA1SQ13698 1873 aa12.46□□□□□ -0.42
USF1-210ENST00000531842 RC3H1Q5TC82 1133 aaKnown RBP12.45□□□□□ -0.42
USF1-210ENST00000531842 ZNF530Q6P9A1 599 aaPredicted RBP12.45□□□□□ -0.42
USF1-210ENST00000531842 DLEC1Q9Y238 1755 aa12.45□□□□□ -0.42
USF1-210ENST00000531842 USP42Q9H9J4 1324 aaKnown RBP12.44□□□□□ -0.42
USF1-210ENST00000531842 POLRMTO00411 1230 aaKnown RBP12.44□□□□□ -0.42
USF1-210ENST00000531842 HMGB2P26583 209 aaKnown RBP12.44□□□□□ -0.42
USF1-210ENST00000531842 CABP4P57796 275 aa12.44□□□□□ -0.42
USF1-210ENST00000531842 PLEKHG2Q9H7P9 1386 aa12.43□□□□□ -0.42
USF1-210ENST00000531842 KDM2BQ8NHM5 1336 aa12.43□□□□□ -0.42
USF1-210ENST00000531842 ANKRD31Q8N7Z5 1873 aa12.43□□□□□ -0.42
USF1-210ENST00000531842 ERVV-2B6SEH9 535 aa12.43□□□□□ -0.42
USF1-210ENST00000531842 ADRA2BP18089 450 aa12.43□□□□□ -0.42
USF1-210ENST00000531842 FSTL1Q12841 308 aa12.43□□□□□ -0.42
USF1-210ENST00000531842 INTS5Q6P9B9 1019 aaKnown RBP12.43□□□□□ -0.42
USF1-210ENST00000531842 NFATC2IPQ8NCF5 419 aa12.43□□□□□ -0.42
USF1-210ENST00000531842 USPL1Q5W0Q7 1092 aa12.42□□□□□ -0.42
USF1-210ENST00000531842 DNAJC10Q8IXB1 793 aa12.42□□□□□ -0.42
USF1-210ENST00000531842 NRXN2Q9P2S2 1712 aa12.42□□□□□ -0.42
USF1-210ENST00000531842 CARMIL3Q8ND23 1372 aa12.42□□□□□ -0.42
USF1-210ENST00000531842 HSPA1AP0DMV8 641 aaKnown RBP12.41□□□□□ -0.42
USF1-210ENST00000531842 HSPA1BP0DMV9 641 aaKnown RBP12.41□□□□□ -0.42
USF1-210ENST00000531842 COL11A2P13942 1736 aaPredicted RBP12.41□□□□□ -0.42
USF1-210ENST00000531842 TM4SF1P30408 202 aa12.41□□□□□ -0.42
USF1-210ENST00000531842 MTHFSP49914 203 aa12.4□□□□□ -0.42
USF1-210ENST00000531842 SLC39A6Q13433 755 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms