RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 ZMIZ1Q9ULJ6 1067 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 MEN1O00255 615 aa7.33□□□□□ -1.24
CD44-233ENST00000531141 BACH1O14867 736 aa7.33□□□□□ -1.24
CD44-233ENST00000531141 CNKSR1Q969H4 720 aa7.33□□□□□ -1.24
CD44-233ENST00000531141 XAGE2Q96GT9 111 aa7.33□□□□□ -1.24
CD44-233ENST00000531141 ARXQ96QS3 562 aa7.33□□□□□ -1.24
CD44-233ENST00000531141 INSM2Q96T92 566 aaPredicted RBP7.33□□□□□ -1.24
CD44-233ENST00000531141 ZNF395Q9H8N7 513 aaPredicted RBP7.33□□□□□ -1.24
CD44-233ENST00000531141 STAU1O95793 577 aaKnown RBP7.32□□□□□ -1.24
CD44-233ENST00000531141 CSB-PGBD3P0DP91 1061 aa7.32□□□□□ -1.24
CD44-233ENST00000531141 TLR1Q15399 786 aa7.32□□□□□ -1.24
CD44-233ENST00000531141 FAM200AQ8TCP9 573 aa7.32□□□□□ -1.24
CD44-233ENST00000531141 STK32AQ8WU08 396 aa7.32□□□□□ -1.24
CD44-233ENST00000531141 SENP2Q9HC62 589 aa7.32□□□□□ -1.24
CD44-233ENST00000531141 POLMQ9NP87 494 aaPredicted RBP7.32□□□□□ -1.24
CD44-233ENST00000531141 USTQ9Y2C2 406 aa7.32□□□□□ -1.24
CD44-233ENST00000531141 ACIN1Q9UKV3 1341 aaKnown RBP7.31□□□□□ -1.24
CD44-233ENST00000531141 SWI5Q1ZZU3 235 aa7.31□□□□□ -1.24
CD44-233ENST00000531141 FOXD4L5Q5VV16 416 aaPredicted RBP7.31□□□□□ -1.24
CD44-233ENST00000531141 NBPF15Q8N660 670 aa7.31□□□□□ -1.24
CD44-233ENST00000531141 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.31□□□□□ -1.24
CD44-233ENST00000531141 KIFC2Q96AC6 838 aa7.31□□□□□ -1.24
CD44-233ENST00000531141 ZFP42Q96MM3 310 aa7.31□□□□□ -1.24
CD44-233ENST00000531141 SLC4A9Q96Q91 983 aa7.31□□□□□ -1.24
CD44-233ENST00000531141 HRH3Q9Y5N1 445 aa7.31□□□□□ -1.24
CD44-233ENST00000531141 SOS2Q07890 1332 aaPredicted RBP7.3□□□□□ -1.24
CD44-233ENST00000531141 TTLL8A6PVC2 850 aa7.3□□□□□ -1.24
CD44-233ENST00000531141 SFI1A8K8P3 1242 aa7.3□□□□□ -1.24
CD44-233ENST00000531141 CTSOP43234 321 aaPredicted RBP7.3□□□□□ -1.24
CD44-233ENST00000531141 RNF144AP50876 292 aaPredicted RBP7.3□□□□□ -1.24
CD44-233ENST00000531141 TMEM164Q5U3C3 297 aa7.3□□□□□ -1.24
CD44-233ENST00000531141 RNF217Q8TC41 542 aa7.3□□□□□ -1.24
CD44-233ENST00000531141 FHDC1Q9C0D6 1143 aaPredicted RBP7.3□□□□□ -1.24
CD44-233ENST00000531141 SMTNP53814 917 aa7.29□□□□□ -1.24
CD44-233ENST00000531141 EPHA4P54764 986 aa7.29□□□□□ -1.24
CD44-233ENST00000531141 MTFR1Q15390 333 aa7.29□□□□□ -1.24
CD44-233ENST00000531141 RETREG2Q8NC44 543 aa7.29□□□□□ -1.24
CD44-233ENST00000531141 TRIM47Q96LD4 638 aa7.29□□□□□ -1.24
CD44-233ENST00000531141 SERTAD1Q9UHV2 236 aa7.29□□□□□ -1.24
CD44-233ENST00000531141 DACH1Q9UI36 760 aa7.29□□□□□ -1.24
CD44-233ENST00000531141 A6NJY4 79 aa7.28□□□□□ -1.24
CD44-233ENST00000531141 POTECB2RU33 542 aa7.28□□□□□ -1.24
CD44-233ENST00000531141 GTF2E1P29083 439 aaPredicted RBP7.28□□□□□ -1.24
CD44-233ENST00000531141 CENPCQ03188 943 aa7.28□□□□□ -1.24
CD44-233ENST00000531141 PDE4CQ08493 712 aa7.28□□□□□ -1.24
CD44-233ENST00000531141 SLC27A3Q5K4L6 730 aa7.28□□□□□ -1.24
CD44-233ENST00000531141 TSEN2Q8NCE0 465 aaKnown RBP7.28□□□□□ -1.24
CD44-233ENST00000531141 ZSCAN10Q96SZ4 725 aaPredicted RBP7.28□□□□□ -1.24
CD44-233ENST00000531141 SCHIP1Q9P0W5 487 aaPredicted RBP7.28□□□□□ -1.24
CD44-233ENST00000531141 GRIP2Q9C0E4 1043 aa7.27□□□□□ -1.25
CD44-233ENST00000531141 TMEM88BA6NKF7 163 aa7.26□□□□□ -1.25
CD44-233ENST00000531141 SPATA31C2B4DYI2 1134 aa7.26□□□□□ -1.25
CD44-233ENST00000531141 MAN1A2O60476 641 aa7.26□□□□□ -1.25
CD44-233ENST00000531141 FOXK2Q01167 660 aa7.26□□□□□ -1.25
CD44-233ENST00000531141 FAM69CQ0P6D2 419 aa7.26□□□□□ -1.25
CD44-233ENST00000531141 GNASQ5JWF2 1037 aa7.26□□□□□ -1.25
CD44-233ENST00000531141 LYSMD3Q7Z3D4 306 aa7.26□□□□□ -1.25
CD44-233ENST00000531141 PPARGC1BQ86YN6 1023 aaKnown RBP7.26□□□□□ -1.25
CD44-233ENST00000531141 RHBDD1Q8TEB9 315 aa7.26□□□□□ -1.25
CD44-233ENST00000531141 CLP1Q92989 425 aaKnown RBP7.26□□□□□ -1.25
CD44-233ENST00000531141 GMPR2Q9P2T1 348 aaKnown RBP7.26□□□□□ -1.25
CD44-233ENST00000531141 DNMT3LQ9UJW3 386 aa7.26□□□□□ -1.25
CD44-233ENST00000531141 IQSEC3Q9UPP2 1182 aaPredicted RBP7.26□□□□□ -1.25
CD44-233ENST00000531141 CDK2AP1O14519 115 aa7.25□□□□□ -1.25
CD44-233ENST00000531141 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.25□□□□□ -1.25
CD44-233ENST00000531141 TMEM214Q6NUQ4 689 aaKnown RBP7.25□□□□□ -1.25
CD44-233ENST00000531141 TREML4Q6UXN2 200 aa7.25□□□□□ -1.25
CD44-233ENST00000531141 SLC9A9Q8IVB4 645 aa7.25□□□□□ -1.25
CD44-233ENST00000531141 TNS4Q8IZW8 715 aa7.25□□□□□ -1.25
CD44-233ENST00000531141 IGFBP4P22692 258 aa7.24□□□□□ -1.25
CD44-233ENST00000531141 PSMA6P60900 246 aaKnown RBP7.24□□□□□ -1.25
CD44-233ENST00000531141 LCE2AQ5TA79 106 aaPredicted RBP7.24□□□□□ -1.25
CD44-233ENST00000531141 TAS1R3Q7RTX0 852 aa7.24□□□□□ -1.25
CD44-233ENST00000531141 GAS2L2Q8NHY3 880 aa7.24□□□□□ -1.25
CD44-233ENST00000531141 HINFPQ9BQA5 517 aa7.24□□□□□ -1.25
CD44-233ENST00000531141 TSPAN10Q9H1Z9 355 aaPredicted RBP7.24□□□□□ -1.25
CD44-233ENST00000531141 WDR44Q5JSH3 913 aa7.23□□□□□ -1.25
CD44-233ENST00000531141 B4GALNT3Q6L9W6 998 aa7.23□□□□□ -1.25
CD44-233ENST00000531141 ZNF295-AS1Q8N0V1 137 aa7.23□□□□□ -1.25
CD44-233ENST00000531141 NIFKQ9BYG3 293 aaKnown RBP7.23□□□□□ -1.25
CD44-233ENST00000531141 CHMP3Q9Y3E7 222 aa7.23□□□□□ -1.25
CD44-233ENST00000531141 USP3Q9Y6I4 520 aa7.23□□□□□ -1.25
CD44-233ENST00000531141 FIGNL2A6NMB9 653 aa7.22□□□□□ -1.25
CD44-233ENST00000531141 C11orf95C9JLR9 678 aaPredicted RBP7.22□□□□□ -1.25
CD44-233ENST00000531141 FOXO3O43524 673 aa7.22□□□□□ -1.25
CD44-233ENST00000531141 WEE1P30291 646 aa7.22□□□□□ -1.25
CD44-233ENST00000531141 NBPF10Q6P3W6 841 aaKnown RBP7.22□□□□□ -1.25
CD44-233ENST00000531141 STAG2Q8N3U4 1231 aa7.22□□□□□ -1.25
CD44-233ENST00000531141 PPP1R12BO60237 982 aaPredicted RBP7.21□□□□□ -1.26
CD44-233ENST00000531141 PLA2G4AP47712 749 aa7.21□□□□□ -1.26
CD44-233ENST00000531141 HIRAP54198 1017 aaPredicted RBP7.21□□□□□ -1.26
CD44-233ENST00000531141 TEAD4Q15561 434 aa7.21□□□□□ -1.26
CD44-233ENST00000531141 OCLNQ16625 522 aa7.21□□□□□ -1.26
CD44-233ENST00000531141 C4orf17Q53FE4 359 aa7.21□□□□□ -1.26
CD44-233ENST00000531141 PRICKLE2Q7Z3G6 844 aa7.21□□□□□ -1.26
CD44-233ENST00000531141 SCG3Q8WXD2 468 aaKnown RBP7.21□□□□□ -1.26
CD44-233ENST00000531141 CXXC1Q9P0U4 656 aaPredicted RBP7.21□□□□□ -1.26
CD44-233ENST00000531141 C21orf2O43822 256 aa7.2□□□□□ -1.26
CD44-233ENST00000531141 PRMT3O60678 531 aa7.2□□□□□ -1.26
CD44-233ENST00000531141 SNRPBP14678 240 aaKnown RBP7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms