RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 ATG3Q9NT62 314 aa17.96■□□□□ 0.47
VPS28-211ENST00000530790 MAP3K5Q99683 1374 aa17.95■□□□□ 0.46
VPS28-211ENST00000530790 ATP6V1AP38606 617 aa17.94■□□□□ 0.46
VPS28-211ENST00000530790 AKAP4Q5JQC9 854 aa17.94■□□□□ 0.46
VPS28-211ENST00000530790 LINC00116Q8NCU8 138 aa17.94■□□□□ 0.46
VPS28-211ENST00000530790 SYT17Q9BSW7 474 aa17.94■□□□□ 0.46
VPS28-211ENST00000530790 ITPK1Q13572 414 aa17.93■□□□□ 0.46
VPS28-211ENST00000530790 CFAP53Q96M91 514 aa17.93■□□□□ 0.46
VPS28-211ENST00000530790 ZNF831Q5JPB2 1677 aa17.93■□□□□ 0.46
VPS28-211ENST00000530790 U2SURPO15042 1029 aaKnown RBP17.92■□□□□ 0.46
VPS28-211ENST00000530790 PHF14O94880 888 aa17.92■□□□□ 0.46
VPS28-211ENST00000530790 KLHL34Q8N239 644 aa17.92■□□□□ 0.46
VPS28-211ENST00000530790 UBR3Q6ZT12 1888 aa17.92■□□□□ 0.46
VPS28-211ENST00000530790 SCN11AQ9UI33 1791 aa17.91■□□□□ 0.46
VPS28-211ENST00000530790 MRC1P22897 1456 aa17.91■□□□□ 0.46
VPS28-211ENST00000530790 SSFA2P28290 1259 aa17.91■□□□□ 0.46
VPS28-211ENST00000530790 MSL1Q68DK7 614 aa17.91■□□□□ 0.46
VPS28-211ENST00000530790 RBM42Q9BTD8 480 aaKnown RBP17.91■□□□□ 0.46
VPS28-211ENST00000530790 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.9■□□□□ 0.46
VPS28-211ENST00000530790 GNPATO15228 680 aa17.9■□□□□ 0.46
VPS28-211ENST00000530790 AMIGO3Q86WK7 504 aa17.89■□□□□ 0.45
VPS28-211ENST00000530790 NFATC2IPQ8NCF5 419 aa17.89■□□□□ 0.45
VPS28-211ENST00000530790 MTHFSDQ2M296 383 aaKnown RBP17.88■□□□□ 0.45
VPS28-211ENST00000530790 SLC52A2Q9HAB3 445 aa17.88■□□□□ 0.45
VPS28-211ENST00000530790 COL5A3P25940 1745 aaPredicted RBP17.88■□□□□ 0.45
VPS28-211ENST00000530790 ADAMTS7Q9UKP4 1686 aa17.87■□□□□ 0.45
VPS28-211ENST00000530790 PPP2R1AP30153 589 aa17.87■□□□□ 0.45
VPS28-211ENST00000530790 SLC4A9Q96Q91 983 aa17.87■□□□□ 0.45
VPS28-211ENST00000530790 CICQ96RK0 1608 aaPredicted RBP17.87■□□□□ 0.45
VPS28-211ENST00000530790 RNMTO43148 476 aaKnown RBP17.86■□□□□ 0.45
VPS28-211ENST00000530790 PTCD1O75127 700 aaKnown RBP17.86■□□□□ 0.45
VPS28-211ENST00000530790 SMIM5Q71RC9 77 aa17.86■□□□□ 0.45
VPS28-211ENST00000530790 NUDCQ9Y266 331 aa17.86■□□□□ 0.45
VPS28-211ENST00000530790 CNTNAP4Q9C0A0 1308 aa17.86■□□□□ 0.45
VPS28-211ENST00000530790 GAS2L2Q8NHY3 880 aa17.85■□□□□ 0.45
VPS28-211ENST00000530790 LGR6Q9HBX8 967 aa17.85■□□□□ 0.45
VPS28-211ENST00000530790 RTCBQ9Y3I0 505 aaKnown RBP17.85■□□□□ 0.45
VPS28-211ENST00000530790 TJP1Q07157 1748 aa17.84■□□□□ 0.45
VPS28-211ENST00000530790 YY1P25490 414 aa17.83■□□□□ 0.44
VPS28-211ENST00000530790 RC3H1Q5TC82 1133 aaKnown RBP17.83■□□□□ 0.44
VPS28-211ENST00000530790 VIRMAQ69YN4 1812 aaKnown RBP17.82■□□□□ 0.44
VPS28-211ENST00000530790 ADRA2BP18089 450 aa17.82■□□□□ 0.44
VPS28-211ENST00000530790 PRKAR2BP31323 418 aa17.82■□□□□ 0.44
VPS28-211ENST00000530790 NLGN2Q8NFZ4 835 aa17.82■□□□□ 0.44
VPS28-211ENST00000530790 RSPH6AQ9H0K4 717 aa17.82■□□□□ 0.44
VPS28-211ENST00000530790 GNAT3A8MTJ3 354 aa17.81■□□□□ 0.44
VPS28-211ENST00000530790 U2AF1L5P0DN76 240 aaPredicted RBP17.81■□□□□ 0.44
VPS28-211ENST00000530790 U2AF1Q01081 240 aaKnown RBP eCLIP17.81■□□□□ 0.44
VPS28-211ENST00000530790 TRAPPC3LQ5T215 181 aa17.81■□□□□ 0.44
VPS28-211ENST00000530790 KCPQ6ZWJ8 1503 aa17.81■□□□□ 0.44
VPS28-211ENST00000530790 CRKLP46109 303 aaKnown RBP17.8■□□□□ 0.44
VPS28-211ENST00000530790 RPS6KA4O75676 772 aa17.79■□□□□ 0.44
VPS28-211ENST00000530790 SLC39A6Q13433 755 aa17.79■□□□□ 0.44
VPS28-211ENST00000530790 GPR162Q16538 588 aa17.79■□□□□ 0.44
VPS28-211ENST00000530790 PELP1Q8IZL8 1130 aaKnown RBP17.79■□□□□ 0.44
VPS28-211ENST00000530790 C4AP0C0L4 1744 aa17.78■□□□□ 0.44
VPS28-211ENST00000530790 TEFQ10587 303 aa17.78■□□□□ 0.44
VPS28-211ENST00000530790 TTC5Q8N0Z6 440 aa17.78■□□□□ 0.44
VPS28-211ENST00000530790 CD2APQ9Y5K6 639 aa17.78■□□□□ 0.44
VPS28-211ENST00000530790 UBR2Q8IWV8 1755 aa17.77■□□□□ 0.44
VPS28-211ENST00000530790 RFC4P35249 363 aa17.77■□□□□ 0.44
VPS28-211ENST00000530790 DNAJC10Q8IXB1 793 aa17.77■□□□□ 0.44
VPS28-211ENST00000530790 ARHGEF1Q92888 912 aaKnown RBP17.77■□□□□ 0.44
VPS28-211ENST00000530790 PHACTR3Q96KR7 559 aa17.77■□□□□ 0.44
VPS28-211ENST00000530790 FCHSD2O94868 740 aa17.76■□□□□ 0.43
VPS28-211ENST00000530790 MMP10P09238 476 aa17.76■□□□□ 0.43
VPS28-211ENST00000530790 MYH14Q7Z406 1995 aaKnown RBP17.75■□□□□ 0.43
VPS28-211ENST00000530790 NLGN1Q8N2Q7 840 aa17.75■□□□□ 0.43
VPS28-211ENST00000530790 IL17REQ8NFR9 667 aa17.75■□□□□ 0.43
VPS28-211ENST00000530790 CCDC87Q9NVE4 849 aa17.75■□□□□ 0.43
VPS28-211ENST00000530790 CEMIPQ8WUJ3 1361 aa17.75■□□□□ 0.43
VPS28-211ENST00000530790 SIPA1L3O60292 1781 aaPredicted RBP17.74■□□□□ 0.43
VPS28-211ENST00000530790 VSIG10Q8N0Z9 540 aa17.74■□□□□ 0.43
VPS28-211ENST00000530790 UTRNP46939 3433 aa17.74■□□□□ 0.43
VPS28-211ENST00000530790 GYS1P13807 737 aa17.73■□□□□ 0.43
VPS28-211ENST00000530790 INTS5Q6P9B9 1019 aaKnown RBP17.73■□□□□ 0.43
VPS28-211ENST00000530790 GOLGB1Q14789 3259 aaKnown RBP17.73■□□□□ 0.43
VPS28-211ENST00000530790 USP42Q9H9J4 1324 aaKnown RBP17.72■□□□□ 0.43
VPS28-211ENST00000530790 NEFMP07197 916 aa17.72■□□□□ 0.43
VPS28-211ENST00000530790 CYP19A1P11511 503 aaPredicted RBP17.72■□□□□ 0.43
VPS28-211ENST00000530790 ZNF790Q6PG37 636 aa17.72■□□□□ 0.43
VPS28-211ENST00000530790 RTF1Q92541 710 aaKnown RBP17.72■□□□□ 0.43
VPS28-211ENST00000530790 SOS1Q07889 1333 aaPredicted RBP17.72■□□□□ 0.43
VPS28-211ENST00000530790 COL15A1P39059 1388 aa17.71■□□□□ 0.43
VPS28-211ENST00000530790 DDX10Q13206 875 aaKnown RBP17.71■□□□□ 0.43
VPS28-211ENST00000530790 RALBP1Q15311 655 aa17.71■□□□□ 0.43
VPS28-211ENST00000530790 C10orf71Q711Q0 1435 aa17.71■□□□□ 0.43
VPS28-211ENST00000530790 HEG1Q9ULI3 1381 aa17.7■□□□□ 0.42
VPS28-211ENST00000530790 GRIN3BO60391 1043 aa17.7■□□□□ 0.42
VPS28-211ENST00000530790 YBX3P16989 372 aaKnown RBP eCLIP17.7■□□□□ 0.42
VPS28-211ENST00000530790 ZNF496Q96IT1 587 aaPredicted RBP17.7■□□□□ 0.42
VPS28-211ENST00000530790 SRP68Q9UHB9 627 aaKnown RBP17.7■□□□□ 0.42
VPS28-211ENST00000530790 ZBTB1Q9Y2K1 713 aa17.7■□□□□ 0.42
VPS28-211ENST00000530790 PARP3Q9Y6F1 533 aa17.7■□□□□ 0.42
VPS28-211ENST00000530790 BTBD11A6QL63 1104 aa17.69■□□□□ 0.42
VPS28-211ENST00000530790 STARD3NLO95772 234 aa17.69■□□□□ 0.42
VPS28-211ENST00000530790 FMNL2Q96PY5 1086 aa17.69■□□□□ 0.42
VPS28-211ENST00000530790 CHD4Q14839 1912 aa17.68■□□□□ 0.42
VPS28-211ENST00000530790 ZPR1O75312 459 aa17.68■□□□□ 0.42
VPS28-211ENST00000530790 MCM10Q7L590 875 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms