RNA–Protein interactions for RNA: ENST00000530041.5

USP47-209, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 3

Gene USP47, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-209ENST00000530041 TMEM229AB2RXF0 380 aa9.84□□□□□ -0.83
USP47-209ENST00000530041 GTF2IP78347 998 aa9.84□□□□□ -0.83
USP47-209ENST00000530041 TLR1Q15399 786 aa9.84□□□□□ -0.83
USP47-209ENST00000530041 USP17L2Q6R6M4 530 aa9.84□□□□□ -0.83
USP47-209ENST00000530041 USP17L1Q7RTZ2 530 aa9.84□□□□□ -0.83
USP47-209ENST00000530041 TIMMDC1Q9NPL8 285 aa9.84□□□□□ -0.83
USP47-209ENST00000530041 GNASQ5JWF2 1037 aa9.83□□□□□ -0.84
USP47-209ENST00000530041 PPARGC1BQ86YN6 1023 aaKnown RBP9.83□□□□□ -0.84
USP47-209ENST00000530041 GMCL1Q96IK5 515 aa9.83□□□□□ -0.84
USP47-209ENST00000530041 CUEDC1Q9NWM3 386 aaPredicted RBP9.83□□□□□ -0.84
USP47-209ENST00000530041 SMTNP53814 917 aa9.82□□□□□ -0.84
USP47-209ENST00000530041 TRIM50Q86XT4 487 aa9.82□□□□□ -0.84
USP47-209ENST00000530041 TRIM22Q8IYM9 498 aa9.82□□□□□ -0.84
USP47-209ENST00000530041 RHBDD1Q8TEB9 315 aa9.82□□□□□ -0.84
USP47-209ENST00000530041 CALR3Q96L12 384 aaKnown RBP9.82□□□□□ -0.84
USP47-209ENST00000530041 SLC4A9Q96Q91 983 aa9.82□□□□□ -0.84
USP47-209ENST00000530041 GAS2L1Q99501 681 aaPredicted RBP9.82□□□□□ -0.84
USP47-209ENST00000530041 C4orf17Q53FE4 359 aa9.81□□□□□ -0.84
USP47-209ENST00000530041 RIPOR1Q6ZS17 1223 aa9.81□□□□□ -0.84
USP47-209ENST00000530041 SERTAD1Q9UHV2 236 aa9.81□□□□□ -0.84
USP47-209ENST00000530041 H7C1W4 665 aa9.8□□□□□ -0.84
USP47-209ENST00000530041 F11P03951 625 aa9.8□□□□□ -0.84
USP47-209ENST00000530041 PHKA2P46019 1235 aa9.8□□□□□ -0.84
USP47-209ENST00000530041 PSME1Q06323 249 aa9.8□□□□□ -0.84
USP47-209ENST00000530041 COL25A1Q9BXS0 654 aaPredicted RBP9.8□□□□□ -0.84
USP47-209ENST00000530041 TFIP11Q9UBB9 837 aaKnown RBP9.8□□□□□ -0.84
USP47-209ENST00000530041 A0A1B0GTH6 734 aa9.79□□□□□ -0.84
USP47-209ENST00000530041 BACH1O14867 736 aa9.79□□□□□ -0.84
USP47-209ENST00000530041 ATP1A2P50993 1020 aa9.79□□□□□ -0.84
USP47-209ENST00000530041 KRT76Q01546 638 aa9.79□□□□□ -0.84
USP47-209ENST00000530041 MTFR1Q15390 333 aa9.79□□□□□ -0.84
USP47-209ENST00000530041 DBN1Q16643 649 aa9.79□□□□□ -0.84
USP47-209ENST00000530041 ZNF837Q96EG3 531 aaPredicted RBP9.79□□□□□ -0.84
USP47-209ENST00000530041 LORP23490 312 aaPredicted RBP9.78□□□□□ -0.84
USP47-209ENST00000530041 ZSCAN1Q8NBB4 408 aa9.78□□□□□ -0.84
USP47-209ENST00000530041 STK17AQ9UEE5 414 aa9.78□□□□□ -0.84
USP47-209ENST00000530041 MKRN1Q9UHC7 482 aaKnown RBP9.78□□□□□ -0.84
USP47-209ENST00000530041 MAFBQ9Y5Q3 323 aaPredicted RBP9.78□□□□□ -0.84
USP47-209ENST00000530041 PALM3A6NDB9 673 aaPredicted RBP9.77□□□□□ -0.85
USP47-209ENST00000530041 A6NJY4 79 aa9.77□□□□□ -0.85
USP47-209ENST00000530041 CDK2AP1O14519 115 aa9.77□□□□□ -0.85
USP47-209ENST00000530041 ZBTB7BO15156 539 aaPredicted RBP9.77□□□□□ -0.85
USP47-209ENST00000530041 CLDN10P78369 228 aa9.77□□□□□ -0.85
USP47-209ENST00000530041 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.77□□□□□ -0.85
USP47-209ENST00000530041 CNTNAP3BQ96NU0 1288 aa9.77□□□□□ -0.85
USP47-209ENST00000530041 CNTNAP3Q9BZ76 1288 aa9.77□□□□□ -0.85
USP47-209ENST00000530041 PPP1R12CQ9BZL4 782 aa9.77□□□□□ -0.85
USP47-209ENST00000530041 ZNF358Q9NW07 568 aa9.77□□□□□ -0.85
USP47-209ENST00000530041 ZNF777Q9ULD5 760 aaPredicted RBP9.77□□□□□ -0.85
USP47-209ENST00000530041 GTF3C3Q9Y5Q9 886 aa9.77□□□□□ -0.85
USP47-209ENST00000530041 RNFT1Q5M7Z0 435 aa9.76□□□□□ -0.85
USP47-209ENST00000530041 FOXR1Q6PIV2 292 aa9.76□□□□□ -0.85
USP47-209ENST00000530041 NIFKQ9BYG3 293 aaKnown RBP9.76□□□□□ -0.85
USP47-209ENST00000530041 DNAAF2Q9NVR5 837 aaKnown RBP9.76□□□□□ -0.85
USP47-209ENST00000530041 IQSEC3Q9UPP2 1182 aaPredicted RBP9.76□□□□□ -0.85
USP47-209ENST00000530041 KIAA1024Q9UPX6 916 aa9.76□□□□□ -0.85
USP47-209ENST00000530041 LARGE2Q8N3Y3 721 aa9.75□□□□□ -0.85
USP47-209ENST00000530041 OGFOD1Q8N543 542 aa9.75□□□□□ -0.85
USP47-209ENST00000530041 TPCN2Q8NHX9 752 aa9.75□□□□□ -0.85
USP47-209ENST00000530041 GPAMQ9HCL2 828 aa9.75□□□□□ -0.85
USP47-209ENST00000530041 PLA2G4AP47712 749 aa9.74□□□□□ -0.85
USP47-209ENST00000530041 CCDC102BQ68D86 513 aa9.74□□□□□ -0.85
USP47-209ENST00000530041 ZNF295-AS1Q8N0V1 137 aa9.74□□□□□ -0.85
USP47-209ENST00000530041 NUCKS1Q9H1E3 243 aaKnown RBP9.74□□□□□ -0.85
USP47-209ENST00000530041 MSX1P28360 303 aa9.73□□□□□ -0.85
USP47-209ENST00000530041 GTPBP3Q969Y2 492 aaKnown RBP9.73□□□□□ -0.85
USP47-209ENST00000530041 ZMYND15Q9H091 742 aa9.73□□□□□ -0.85
USP47-209ENST00000530041 SCHIP1Q9P0W5 487 aaPredicted RBP9.73□□□□□ -0.85
USP47-209ENST00000530041 USP3Q9Y6I4 520 aa9.73□□□□□ -0.85
USP47-209ENST00000530041 CSB-PGBD3P0DP91 1061 aa9.72□□□□□ -0.85
USP47-209ENST00000530041 EPHA4P54764 986 aa9.72□□□□□ -0.85
USP47-209ENST00000530041 GAS6Q14393 721 aa9.72□□□□□ -0.85
USP47-209ENST00000530041 LBRQ14739 615 aaKnown RBP9.72□□□□□ -0.85
USP47-209ENST00000530041 SIX5Q8N196 739 aa9.72□□□□□ -0.85
USP47-209ENST00000530041 PGBD3Q8N328 593 aa9.72□□□□□ -0.85
USP47-209ENST00000530041 FAM181BA6NEQ2 426 aa9.71□□□□□ -0.86
USP47-209ENST00000530041 GPR25O00155 361 aa9.71□□□□□ -0.86
USP47-209ENST00000530041 THBS1P07996 1170 aa9.71□□□□□ -0.86
USP47-209ENST00000530041 RASA1P20936 1047 aa9.71□□□□□ -0.86
USP47-209ENST00000530041 FOXK2Q01167 660 aa9.71□□□□□ -0.86
USP47-209ENST00000530041 C1orf216Q8TAB5 229 aa9.71□□□□□ -0.86
USP47-209ENST00000530041 TRERF1Q96PN7 1200 aa9.71□□□□□ -0.86
USP47-209ENST00000530041 RUBCNLQ9H714 662 aa9.71□□□□□ -0.86
USP47-209ENST00000530041 CABP1Q9NZU7 370 aa9.71□□□□□ -0.86
USP47-209ENST00000530041 M0R2N6 131 aa9.7□□□□□ -0.86
USP47-209ENST00000530041 DKK1O94907 266 aa9.7□□□□□ -0.86
USP47-209ENST00000530041 SLURP2P0DP57 97 aa9.7□□□□□ -0.86
USP47-209ENST00000530041 LMOD1P29536 600 aaPredicted RBP9.7□□□□□ -0.86
USP47-209ENST00000530041 KANK4Q5T7N3 995 aaPredicted RBP9.7□□□□□ -0.86
USP47-209ENST00000530041 TNS4Q8IZW8 715 aa9.7□□□□□ -0.86
USP47-209ENST00000530041 AIDAQ96BJ3 306 aa9.7□□□□□ -0.86
USP47-209ENST00000530041 ZNF594Q96JF6 807 aaPredicted RBP9.7□□□□□ -0.86
USP47-209ENST00000530041 CRISPLD1Q9H336 500 aa9.7□□□□□ -0.86
USP47-209ENST00000530041 NBPF1Q3BBV0 1214 aa9.69□□□□□ -0.86
USP47-209ENST00000530041 EFHC2Q5JST6 749 aa9.69□□□□□ -0.86
USP47-209ENST00000530041 RBM19Q9Y4C8 960 aaKnown RBP9.69□□□□□ -0.86
USP47-209ENST00000530041 ATP4AP20648 1035 aa9.68□□□□□ -0.86
USP47-209ENST00000530041 SRSF11Q05519 484 aaKnown RBP9.68□□□□□ -0.86
USP47-209ENST00000530041 CFAP70Q5T0N1 1121 aa9.68□□□□□ -0.86
USP47-209ENST00000530041 LARP1Q6PKG0 1096 aaKnown RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms