RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 USP54Q70EL1 1684 aa12.35□□□□□ -0.43
SSBP3-212ENST00000528930 EIF3AQ14152 1382 aaKnown RBP12.34□□□□□ -0.43
SSBP3-212ENST00000528930 KRTAP3-3Q9BYR6 98 aa12.34□□□□□ -0.43
SSBP3-212ENST00000528930 KRTAP3-2Q9BYR7 98 aa12.34□□□□□ -0.43
SSBP3-212ENST00000528930 BOLA1Q9Y3E2 137 aa12.34□□□□□ -0.43
SSBP3-212ENST00000528930 KIF13BQ9NQT8 1826 aa12.34□□□□□ -0.43
SSBP3-212ENST00000528930 BRCA1P38398 1863 aaKnown RBP12.34□□□□□ -0.43
SSBP3-212ENST00000528930 CDCA7Q9BWT1 371 aaPredicted RBP12.33□□□□□ -0.44
SSBP3-212ENST00000528930 ABHD8Q96I13 439 aa12.32□□□□□ -0.44
SSBP3-212ENST00000528930 C14orf93Q9H972 538 aaKnown RBP12.32□□□□□ -0.44
SSBP3-212ENST00000528930 USP6P35125 1406 aa12.31□□□□□ -0.44
SSBP3-212ENST00000528930 G3V3G9 751 aa12.31□□□□□ -0.44
SSBP3-212ENST00000528930 VIRMAQ69YN4 1812 aaKnown RBP12.31□□□□□ -0.44
SSBP3-212ENST00000528930 IGSF1Q8N6C5 1336 aa12.31□□□□□ -0.44
SSBP3-212ENST00000528930 ARFGEF1Q9Y6D6 1849 aa12.3□□□□□ -0.44
SSBP3-212ENST00000528930 CFAP70Q5T0N1 1121 aa12.3□□□□□ -0.44
SSBP3-212ENST00000528930 C16orf71Q8IYS4 520 aaPredicted RBP12.3□□□□□ -0.44
SSBP3-212ENST00000528930 FOXN1O15353 648 aa12.29□□□□□ -0.44
SSBP3-212ENST00000528930 HOXB3P14651 431 aaPredicted RBP12.29□□□□□ -0.44
SSBP3-212ENST00000528930 SLC27A3Q5K4L6 730 aa12.29□□□□□ -0.44
SSBP3-212ENST00000528930 NGDNQ8NEJ9 315 aaKnown RBP12.29□□□□□ -0.44
SSBP3-212ENST00000528930 DCAF11Q8TEB1 546 aa12.29□□□□□ -0.44
SSBP3-212ENST00000528930 PLEKHG2Q9H7P9 1386 aa12.29□□□□□ -0.44
SSBP3-212ENST00000528930 TNRC18O15417 2968 aaPredicted RBP12.28□□□□□ -0.44
SSBP3-212ENST00000528930 TAF1LQ8IZX4 1826 aa12.28□□□□□ -0.44
SSBP3-212ENST00000528930 SBF1O95248 1867 aa12.28□□□□□ -0.44
SSBP3-212ENST00000528930 TFCP2L1Q9NZI6 479 aa12.28□□□□□ -0.44
SSBP3-212ENST00000528930 C5P01031 1676 aa12.28□□□□□ -0.44
SSBP3-212ENST00000528930 N4BP2Q86UW6 1770 aaPredicted RBP12.28□□□□□ -0.44
SSBP3-212ENST00000528930 SLIT3O75094 1523 aa12.27□□□□□ -0.44
SSBP3-212ENST00000528930 KCPQ6ZWJ8 1503 aa12.27□□□□□ -0.44
SSBP3-212ENST00000528930 NUTM2GQ5VZR2 741 aa12.27□□□□□ -0.45
SSBP3-212ENST00000528930 SMC1BQ8NDV3 1235 aa12.27□□□□□ -0.45
SSBP3-212ENST00000528930 STAC3Q96MF2 364 aa12.27□□□□□ -0.45
SSBP3-212ENST00000528930 PRAM1Q96QH2 718 aa12.27□□□□□ -0.45
SSBP3-212ENST00000528930 KDM2AQ9Y2K7 1162 aa12.27□□□□□ -0.45
SSBP3-212ENST00000528930 WDR17Q8IZU2 1322 aa12.27□□□□□ -0.45
SSBP3-212ENST00000528930 TRIM26Q12899 539 aaPredicted RBP12.26□□□□□ -0.45
SSBP3-212ENST00000528930 SAFB2Q14151 953 aaKnown RBP eCLIP12.25□□□□□ -0.45
SSBP3-212ENST00000528930 TOM1L2Q6ZVM7 507 aa12.25□□□□□ -0.45
SSBP3-212ENST00000528930 EFCAB3Q8N7B9 438 aa12.25□□□□□ -0.45
SSBP3-212ENST00000528930 HIRIP3Q9BW71 556 aaPredicted RBP12.25□□□□□ -0.45
SSBP3-212ENST00000528930 POLR3AO14802 1390 aaPredicted RBP12.25□□□□□ -0.45
SSBP3-212ENST00000528930 ADGRB1O14514 1584 aa12.25□□□□□ -0.45
SSBP3-212ENST00000528930 TOGARAM1Q9Y4F4 1720 aa12.25□□□□□ -0.45
SSBP3-212ENST00000528930 COL23A1Q86Y22 540 aaPredicted RBP12.24□□□□□ -0.45
SSBP3-212ENST00000528930 DOT1LQ8TEK3 1739 aa12.24□□□□□ -0.45
SSBP3-212ENST00000528930 ACSBG1Q96GR2 724 aa12.24□□□□□ -0.45
SSBP3-212ENST00000528930 GCP02774 474 aa12.23□□□□□ -0.45
SSBP3-212ENST00000528930 MSL1Q68DK7 614 aa12.23□□□□□ -0.45
SSBP3-212ENST00000528930 SIN3AQ96ST3 1273 aa12.23□□□□□ -0.45
SSBP3-212ENST00000528930 EXOC5O00471 708 aa12.22□□□□□ -0.45
SSBP3-212ENST00000528930 CTCFP49711 727 aaPredicted RBP12.22□□□□□ -0.45
SSBP3-212ENST00000528930 ZNF710Q8N1W2 664 aa12.22□□□□□ -0.45
SSBP3-212ENST00000528930 UBR3Q6ZT12 1888 aa12.22□□□□□ -0.45
SSBP3-212ENST00000528930 PPIP5K1Q6PFW1 1433 aa12.21□□□□□ -0.45
SSBP3-212ENST00000528930 KDM2BQ8NHM5 1336 aa12.2□□□□□ -0.46
SSBP3-212ENST00000528930 CARD10Q9BWT7 1032 aa12.2□□□□□ -0.46
SSBP3-212ENST00000528930 CCDC7Q96M83 1385 aa12.19□□□□□ -0.46
SSBP3-212ENST00000528930 WASLO00401 505 aaPredicted RBP12.19□□□□□ -0.46
SSBP3-212ENST00000528930 L3MBTL2Q969R5 705 aa12.19□□□□□ -0.46
SSBP3-212ENST00000528930 TRAK1Q9UPV9 953 aa12.19□□□□□ -0.46
SSBP3-212ENST00000528930 ERBB3P21860 1342 aa12.18□□□□□ -0.46
SSBP3-212ENST00000528930 HOXB1P14653 301 aaPredicted RBP12.18□□□□□ -0.46
SSBP3-212ENST00000528930 ABTB2Q8N961 1025 aa12.18□□□□□ -0.46
SSBP3-212ENST00000528930 CCDC85CA6NKD9 419 aa12.17□□□□□ -0.46
SSBP3-212ENST00000528930 KCNQ4P56696 695 aa12.17□□□□□ -0.46
SSBP3-212ENST00000528930 NEUROD1Q13562 356 aa12.17□□□□□ -0.46
SSBP3-212ENST00000528930 RRAGCQ9HB90 399 aa12.17□□□□□ -0.46
SSBP3-212ENST00000528930 POGKQ9P215 609 aa12.17□□□□□ -0.46
SSBP3-212ENST00000528930 CPSF1Q10570 1443 aaKnown RBP12.17□□□□□ -0.46
SSBP3-212ENST00000528930 LBX1P52954 281 aa12.16□□□□□ -0.46
SSBP3-212ENST00000528930 NBPF1Q3BBV0 1214 aa12.16□□□□□ -0.46
SSBP3-212ENST00000528930 NLRP13Q86W25 1043 aa12.16□□□□□ -0.46
SSBP3-212ENST00000528930 AXIN2Q9Y2T1 843 aa12.16□□□□□ -0.46
SSBP3-212ENST00000528930 MINK1Q8N4C8 1332 aaPredicted RBP12.15□□□□□ -0.46
SSBP3-212ENST00000528930 DOK7Q18PE1 504 aa12.15□□□□□ -0.46
SSBP3-212ENST00000528930 TMEM92Q6UXU6 159 aa12.15□□□□□ -0.46
SSBP3-212ENST00000528930 CNTNAP1P78357 1384 aa12.15□□□□□ -0.46
SSBP3-212ENST00000528930 TIAM2Q8IVF5 1701 aa12.14□□□□□ -0.47
SSBP3-212ENST00000528930 ACEP12821 1306 aa12.14□□□□□ -0.47
SSBP3-212ENST00000528930 C9orf131Q5VYM1 1079 aa12.14□□□□□ -0.47
SSBP3-212ENST00000528930 AIDAQ96BJ3 306 aa12.14□□□□□ -0.47
SSBP3-212ENST00000528930 NSD2O96028 1365 aa12.14□□□□□ -0.47
SSBP3-212ENST00000528930 C4BP0C0L5 1744 aa12.14□□□□□ -0.47
SSBP3-212ENST00000528930 CCDC88AQ3V6T2 1871 aa12.13□□□□□ -0.47
SSBP3-212ENST00000528930 THSD7BQ9C0I4 1608 aa12.13□□□□□ -0.47
SSBP3-212ENST00000528930 HSPA8P11142 646 aaKnown RBP12.13□□□□□ -0.47
SSBP3-212ENST00000528930 NUDT16Q96DE0 195 aaKnown RBP12.13□□□□□ -0.47
SSBP3-212ENST00000528930 MKRN1Q9UHC7 482 aaKnown RBP12.13□□□□□ -0.47
SSBP3-212ENST00000528930 WBP1LQ9NX94 342 aa12.12□□□□□ -0.47
SSBP3-212ENST00000528930 ARHGAP27Q6ZUM4 889 aa12.11□□□□□ -0.47
SSBP3-212ENST00000528930 MICALL2Q8IY33 904 aa12.11□□□□□ -0.47
SSBP3-212ENST00000528930 ZBTB7CA1YPR0 619 aa12.1□□□□□ -0.47
SSBP3-212ENST00000528930 VARS2Q5ST30 1063 aaKnown RBP12.1□□□□□ -0.47
SSBP3-212ENST00000528930 PRPF38BQ5VTL8 546 aaKnown RBP12.1□□□□□ -0.47
SSBP3-212ENST00000528930 FLAD1Q8NFF5 587 aa12.1□□□□□ -0.47
SSBP3-212ENST00000528930 BCS1LQ9Y276 419 aa12.1□□□□□ -0.47
SSBP3-212ENST00000528930 ANKRD36BQ8N2N9 1353 aa12.09□□□□□ -0.47
SSBP3-212ENST00000528930 PLEKHG3A1L390 1219 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 189.7 ms