RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 A0A0G2JLW4 131 aa14.62□□□□□ -0.07
CPSF1-203ENST00000527916 FYB1O15117 783 aa14.62□□□□□ -0.07
CPSF1-203ENST00000527916 ATP6V1AP38606 617 aa14.62□□□□□ -0.07
CPSF1-203ENST00000527916 NKX1-1Q15270 411 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-203ENST00000527916 COL13A1Q5TAT6 717 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-203ENST00000527916 JMYQ8N9B5 988 aa14.62□□□□□ -0.07
CPSF1-203ENST00000527916 WDR90Q96KV7 1748 aa14.62□□□□□ -0.07
CPSF1-203ENST00000527916 GGNBP2Q9H3C7 697 aa14.62□□□□□ -0.07
CPSF1-203ENST00000527916 PLEKHG2Q9H7P9 1386 aa14.61□□□□□ -0.07
CPSF1-203ENST00000527916 CAPN15O75808 1086 aa14.61□□□□□ -0.07
CPSF1-203ENST00000527916 FCHSD2O94868 740 aa14.61□□□□□ -0.07
CPSF1-203ENST00000527916 TRAPPC3LQ5T215 181 aa14.61□□□□□ -0.07
CPSF1-203ENST00000527916 CCDC87Q9NVE4 849 aa14.61□□□□□ -0.07
CPSF1-203ENST00000527916 KIF13BQ9NQT8 1826 aa14.61□□□□□ -0.07
CPSF1-203ENST00000527916 KDM2BQ8NHM5 1336 aa14.61□□□□□ -0.07
CPSF1-203ENST00000527916 TNS4Q8IZW8 715 aa14.6□□□□□ -0.07
CPSF1-203ENST00000527916 RTCBQ9Y3I0 505 aaKnown RBP14.6□□□□□ -0.07
CPSF1-203ENST00000527916 MAP2P11137 1827 aaKnown RBP14.59□□□□□ -0.07
CPSF1-203ENST00000527916 ITPK1Q13572 414 aa14.59□□□□□ -0.07
CPSF1-203ENST00000527916 C9orf131Q5VYM1 1079 aa14.59□□□□□ -0.07
CPSF1-203ENST00000527916 ASAP1Q9ULH1 1129 aa14.59□□□□□ -0.07
CPSF1-203ENST00000527916 N4BP2Q86UW6 1770 aaPredicted RBP14.59□□□□□ -0.07
CPSF1-203ENST00000527916 C10orf71Q711Q0 1435 aa14.58□□□□□ -0.07
CPSF1-203ENST00000527916 DPEP1P16444 411 aa14.58□□□□□ -0.08
CPSF1-203ENST00000527916 ADRA2BP18089 450 aa14.58□□□□□ -0.08
CPSF1-203ENST00000527916 PRELPP51888 382 aa14.58□□□□□ -0.08
CPSF1-203ENST00000527916 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.58□□□□□ -0.08
CPSF1-203ENST00000527916 PARP3Q9Y6F1 533 aa14.58□□□□□ -0.08
CPSF1-203ENST00000527916 PKD1L3Q7Z443 1732 aa14.58□□□□□ -0.08
CPSF1-203ENST00000527916 HTRA3P83110 453 aa14.57□□□□□ -0.08
CPSF1-203ENST00000527916 RFC4P35249 363 aa14.56□□□□□ -0.08
CPSF1-203ENST00000527916 IFNL2Q8IZJ0 200 aa14.56□□□□□ -0.08
CPSF1-203ENST00000527916 CCER1Q8TC90 406 aaPredicted RBP14.56□□□□□ -0.08
CPSF1-203ENST00000527916 PIM2Q9P1W9 311 aa14.56□□□□□ -0.08
CPSF1-203ENST00000527916 KIAA1551Q9HCM1 1747 aa14.55□□□□□ -0.08
CPSF1-203ENST00000527916 DALRD3Q5D0E6 543 aaKnown RBP14.55□□□□□ -0.08
CPSF1-203ENST00000527916 SMC1BQ8NDV3 1235 aa14.55□□□□□ -0.08
CPSF1-203ENST00000527916 ATG3Q9NT62 314 aa14.55□□□□□ -0.08
CPSF1-203ENST00000527916 PPM1GO15355 546 aaPredicted RBP14.54□□□□□ -0.08
CPSF1-203ENST00000527916 RC3H1Q5TC82 1133 aaKnown RBP14.54□□□□□ -0.08
CPSF1-203ENST00000527916 ARHGEF1Q92888 912 aaKnown RBP14.54□□□□□ -0.08
CPSF1-203ENST00000527916 RNF181Q9P0P0 153 aa14.54□□□□□ -0.08
CPSF1-203ENST00000527916 KIF20BQ96Q89 1820 aa14.53□□□□□ -0.08
CPSF1-203ENST00000527916 ARFGEF1Q9Y6D6 1849 aa14.53□□□□□ -0.08
CPSF1-203ENST00000527916 GYS1P13807 737 aa14.53□□□□□ -0.08
CPSF1-203ENST00000527916 PHKG2P15735 406 aa14.53□□□□□ -0.08
CPSF1-203ENST00000527916 DCAF5Q96JK2 942 aa14.53□□□□□ -0.08
CPSF1-203ENST00000527916 CARD14Q9BXL6 1004 aa14.53□□□□□ -0.08
CPSF1-203ENST00000527916 RRAGCQ9HB90 399 aa14.53□□□□□ -0.08
CPSF1-203ENST00000527916 BRCA1P38398 1863 aaKnown RBP14.52□□□□□ -0.08
CPSF1-203ENST00000527916 C4AP0C0L4 1744 aa14.52□□□□□ -0.08
CPSF1-203ENST00000527916 KCPQ6ZWJ8 1503 aa14.52□□□□□ -0.08
CPSF1-203ENST00000527916 NCAPD2Q15021 1401 aa14.52□□□□□ -0.08
CPSF1-203ENST00000527916 RPS6KA4O75676 772 aa14.52□□□□□ -0.09
CPSF1-203ENST00000527916 EIF4G2P78344 907 aaKnown RBP eCLIP14.52□□□□□ -0.09
CPSF1-203ENST00000527916 RBM42Q9BTD8 480 aaKnown RBP14.52□□□□□ -0.09
CPSF1-203ENST00000527916 EMILIN1Q9Y6C2 1016 aa14.52□□□□□ -0.09
CPSF1-203ENST00000527916 CNTNAP4Q9C0A0 1308 aa14.51□□□□□ -0.09
CPSF1-203ENST00000527916 KCNA3P22001 575 aa14.51□□□□□ -0.09
CPSF1-203ENST00000527916 KDRP35968 1356 aa14.5□□□□□ -0.09
CPSF1-203ENST00000527916 ERVV-2B6SEH9 535 aa14.5□□□□□ -0.09
CPSF1-203ENST00000527916 EYA1Q99502 592 aa14.5□□□□□ -0.09
CPSF1-203ENST00000527916 TNRC6CQ9HCJ0 1690 aaKnown RBP14.49□□□□□ -0.09
CPSF1-203ENST00000527916 WASHC2AQ641Q2 1341 aa14.49□□□□□ -0.09
CPSF1-203ENST00000527916 ZC3H4Q9UPT8 1303 aaKnown RBP14.49□□□□□ -0.09
CPSF1-203ENST00000527916 HSP90AB1P08238 724 aaKnown RBP14.49□□□□□ -0.09
CPSF1-203ENST00000527916 HSPA1AP0DMV8 641 aaKnown RBP14.48□□□□□ -0.09
CPSF1-203ENST00000527916 HSPA1BP0DMV9 641 aaKnown RBP14.48□□□□□ -0.09
CPSF1-203ENST00000527916 SLC4A9Q96Q91 983 aa14.48□□□□□ -0.09
CPSF1-203ENST00000527916 ZNF831Q5JPB2 1677 aa14.48□□□□□ -0.09
CPSF1-203ENST00000527916 HSPA5P11021 654 aaKnown RBP14.47□□□□□ -0.09
CPSF1-203ENST00000527916 VEGFAP15692 232 aaPredicted RBP14.47□□□□□ -0.09
CPSF1-203ENST00000527916 SBF1O95248 1867 aa14.46□□□□□ -0.1
CPSF1-203ENST00000527916 COL5A3P25940 1745 aaPredicted RBP14.45□□□□□ -0.1
CPSF1-203ENST00000527916 CABP4P57796 275 aa14.45□□□□□ -0.1
CPSF1-203ENST00000527916 MYH14Q7Z406 1995 aaKnown RBP14.44□□□□□ -0.1
CPSF1-203ENST00000527916 LMNB1P20700 586 aa14.44□□□□□ -0.1
CPSF1-203ENST00000527916 CHRNA5P30532 468 aa14.44□□□□□ -0.1
CPSF1-203ENST00000527916 FKBP8Q14318 412 aa14.44□□□□□ -0.1
CPSF1-203ENST00000527916 USP42Q9H9J4 1324 aaKnown RBP14.43□□□□□ -0.1
CPSF1-203ENST00000527916 GLTPD2A6NH11 291 aa14.43□□□□□ -0.1
CPSF1-203ENST00000527916 PTCD1O75127 700 aaKnown RBP14.43□□□□□ -0.1
CPSF1-203ENST00000527916 CRKLP46109 303 aaKnown RBP14.43□□□□□ -0.1
CPSF1-203ENST00000527916 DDR1Q08345 913 aa14.43□□□□□ -0.1
CPSF1-203ENST00000527916 PLEKHO1Q53GL0 409 aaPredicted RBP14.43□□□□□ -0.1
CPSF1-203ENST00000527916 SRP68Q9UHB9 627 aaKnown RBP14.43□□□□□ -0.1
CPSF1-203ENST00000527916 ANKRD26Q9UPS8 1709 aa14.43□□□□□ -0.1
CPSF1-203ENST00000527916 ZPR1O75312 459 aa14.42□□□□□ -0.1
CPSF1-203ENST00000527916 POLRMTO00411 1230 aaKnown RBP14.41□□□□□ -0.1
CPSF1-203ENST00000527916 RASSF7Q02833 373 aa14.41□□□□□ -0.1
CPSF1-203ENST00000527916 EIF4A2Q14240 407 aaKnown RBP14.41□□□□□ -0.1
CPSF1-203ENST00000527916 AMOTQ4VCS5 1084 aa14.41□□□□□ -0.1
CPSF1-203ENST00000527916 POLKQ9UBT6 870 aa14.41□□□□□ -0.1
CPSF1-203ENST00000527916 KDM6AO15550 1401 aaPredicted RBP14.41□□□□□ -0.1
CPSF1-203ENST00000527916 MTHFSP49914 203 aa14.4□□□□□ -0.1
CPSF1-203ENST00000527916 DPY19L2Q6NUT2 758 aa14.4□□□□□ -0.1
CPSF1-203ENST00000527916 ZNF530Q6P9A1 599 aaPredicted RBP14.4□□□□□ -0.1
CPSF1-203ENST00000527916 POLR3GLQ9BT43 218 aa14.4□□□□□ -0.1
CPSF1-203ENST00000527916 PANK3Q9H999 370 aa14.4□□□□□ -0.1
CPSF1-203ENST00000527916 TM4SF1P30408 202 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms