RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 FRAT1Q92837 279 aaPredicted RBP24.18■■□□□ 1.46
VPS28-207ENST00000526977 CANXP27824 592 aaKnown RBP24.18■■□□□ 1.46
VPS28-207ENST00000526977 FBXO41Q8TF61 875 aa24.17■■□□□ 1.46
VPS28-207ENST00000526977 BCL2L13Q9BXK5 485 aa24.17■■□□□ 1.46
VPS28-207ENST00000526977 KDM6AO15550 1401 aaPredicted RBP24.17■■□□□ 1.46
VPS28-207ENST00000526977 SLC52A2Q9HAB3 445 aa24.17■■□□□ 1.46
VPS28-207ENST00000526977 BTBD11A6QL63 1104 aa24.16■■□□□ 1.46
VPS28-207ENST00000526977 VAMP4O75379 141 aa24.16■■□□□ 1.46
VPS28-207ENST00000526977 TWISTNBQ3B726 338 aaPredicted RBP24.16■■□□□ 1.46
VPS28-207ENST00000526977 C8orf58Q8NAV2 365 aa24.16■■□□□ 1.46
VPS28-207ENST00000526977 PANK1Q8TE04 598 aa24.16■■□□□ 1.46
VPS28-207ENST00000526977 AFF2P51816 1311 aa24.16■■□□□ 1.46
VPS28-207ENST00000526977 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.15■■□□□ 1.46
VPS28-207ENST00000526977 ERVV-2B6SEH9 535 aa24.14■■□□□ 1.45
VPS28-207ENST00000526977 DDB1Q16531 1140 aa24.14■■□□□ 1.45
VPS28-207ENST00000526977 TSPYL6Q8N831 410 aa24.14■■□□□ 1.45
VPS28-207ENST00000526977 ALDH1L2Q3SY69 923 aa24.13■■□□□ 1.45
VPS28-207ENST00000526977 SCN11AQ9UI33 1791 aa24.13■■□□□ 1.45
VPS28-207ENST00000526977 NFATC2IPQ8NCF5 419 aa24.13■■□□□ 1.45
VPS28-207ENST00000526977 SOS1Q07889 1333 aaPredicted RBP24.13■■□□□ 1.45
VPS28-207ENST00000526977 ELL2O00472 640 aaPredicted RBP24.12■■□□□ 1.45
VPS28-207ENST00000526977 CABP4P57796 275 aa24.12■■□□□ 1.45
VPS28-207ENST00000526977 COG6Q9Y2V7 657 aa24.12■■□□□ 1.45
VPS28-207ENST00000526977 KDM2BQ8NHM5 1336 aa24.12■■□□□ 1.45
VPS28-207ENST00000526977 TRPC5Q9UL62 973 aaPredicted RBP24.11■■□□□ 1.45
VPS28-207ENST00000526977 WNK3Q9BYP7 1800 aa24.11■■□□□ 1.45
VPS28-207ENST00000526977 TNS2Q63HR2 1409 aa24.11■■□□□ 1.45
VPS28-207ENST00000526977 SSH1Q8WYL5 1049 aa24.11■■□□□ 1.45
VPS28-207ENST00000526977 TNNQ9UQP3 1299 aa24.11■■□□□ 1.45
VPS28-207ENST00000526977 SHANK3Q9BYB0 1731 aa24.11■■□□□ 1.45
VPS28-207ENST00000526977 VIRMAQ69YN4 1812 aaKnown RBP24.11■■□□□ 1.45
VPS28-207ENST00000526977 RLBP1P12271 317 aa24.1■■□□□ 1.45
VPS28-207ENST00000526977 FAM98CQ17RN3 349 aaKnown RBP24.1■■□□□ 1.45
VPS28-207ENST00000526977 GJD4Q96KN9 370 aaPredicted RBP24.1■■□□□ 1.45
VPS28-207ENST00000526977 MRC1P22897 1456 aa24.09■■□□□ 1.45
VPS28-207ENST00000526977 EIF4A1P60842 406 aaKnown RBP24.08■■□□□ 1.45
VPS28-207ENST00000526977 KRT24Q2M2I5 525 aa24.08■■□□□ 1.45
VPS28-207ENST00000526977 CENPQQ7L2Z9 268 aaPredicted RBP24.08■■□□□ 1.45
VPS28-207ENST00000526977 SMC4Q9NTJ3 1288 aa24.08■■□□□ 1.45
VPS28-207ENST00000526977 BRPF1P55201 1214 aaPredicted RBP24.08■■□□□ 1.44
VPS28-207ENST00000526977 ZKSCAN2Q63HK3 967 aa24.07■■□□□ 1.44
VPS28-207ENST00000526977 CHMP4AQ9BY43 222 aa24.07■■□□□ 1.44
VPS28-207ENST00000526977 SIPA1L3O60292 1781 aaPredicted RBP24.07■■□□□ 1.44
VPS28-207ENST00000526977 ZNF790Q6PG37 636 aa24.06■■□□□ 1.44
VPS28-207ENST00000526977 ATRNO75882 1429 aa24.06■■□□□ 1.44
VPS28-207ENST00000526977 HOXB7P09629 217 aa24.05■■□□□ 1.44
VPS28-207ENST00000526977 KDM3BQ7LBC6 1761 aa24.05■■□□□ 1.44
VPS28-207ENST00000526977 TCERG1O14776 1098 aaKnown RBP24.05■■□□□ 1.44
VPS28-207ENST00000526977 CLUAP1Q96AJ1 413 aa24.05■■□□□ 1.44
VPS28-207ENST00000526977 QTRT2Q9H974 415 aaKnown RBP24.05■■□□□ 1.44
VPS28-207ENST00000526977 KCNQ3O43525 872 aa24.04■■□□□ 1.44
VPS28-207ENST00000526977 KIF16BQ96L93 1317 aa24.03■■□□□ 1.44
VPS28-207ENST00000526977 ONECUT3O60422 494 aaPredicted RBP24.03■■□□□ 1.44
VPS28-207ENST00000526977 TTC5Q8N0Z6 440 aa24.03■■□□□ 1.44
VPS28-207ENST00000526977 AAMPQ13685 434 aa24.02■■□□□ 1.44
VPS28-207ENST00000526977 NOB1Q9ULX3 412 aaKnown RBP24.02■■□□□ 1.44
VPS28-207ENST00000526977 IPO8O15397 1037 aaKnown RBP24.01■■□□□ 1.43
VPS28-207ENST00000526977 MS4A1P11836 297 aa24.01■■□□□ 1.43
VPS28-207ENST00000526977 DZIP1LQ8IYY4 767 aaKnown RBP24.01■■□□□ 1.43
VPS28-207ENST00000526977 MRPL50Q8N5N7 158 aaKnown RBP24.01■■□□□ 1.43
VPS28-207ENST00000526977 MARCH10Q8NA82 808 aaPredicted RBP24.01■■□□□ 1.43
VPS28-207ENST00000526977 TMOD3Q9NYL9 352 aa24.01■■□□□ 1.43
VPS28-207ENST00000526977 HEG1Q9ULI3 1381 aa24.01■■□□□ 1.43
VPS28-207ENST00000526977 SLC39A6Q13433 755 aa24.01■■□□□ 1.43
VPS28-207ENST00000526977 CCDC30Q5VVM6 783 aa24.01■■□□□ 1.43
VPS28-207ENST00000526977 ZNF772Q68DY9 489 aaPredicted RBP24.01■■□□□ 1.43
VPS28-207ENST00000526977 A0A0G2JS52 829 aa24■■□□□ 1.43
VPS28-207ENST00000526977 TRIM27P14373 513 aa24■■□□□ 1.43
VPS28-207ENST00000526977 MYT1Q01538 1121 aa24■■□□□ 1.43
VPS28-207ENST00000526977 ATF7IPQ6VMQ6 1270 aa24■■□□□ 1.43
VPS28-207ENST00000526977 SKAP1Q86WV1 359 aa24■■□□□ 1.43
VPS28-207ENST00000526977 GIGYF1O75420 1035 aaPredicted RBP23.99■■□□□ 1.43
VPS28-207ENST00000526977 IGHDP01880 384 aa23.99■■□□□ 1.43
VPS28-207ENST00000526977 GLI3P10071 1580 aa23.99■■□□□ 1.43
VPS28-207ENST00000526977 MVPQ14764 893 aaKnown RBP23.98■■□□□ 1.43
VPS28-207ENST00000526977 FTSJ3Q8IY81 847 aaKnown RBP23.98■■□□□ 1.43
VPS28-207ENST00000526977 ARHGAP45Q92619 1136 aa23.98■■□□□ 1.43
VPS28-207ENST00000526977 FMNL2Q96PY5 1086 aa23.98■■□□□ 1.43
VPS28-207ENST00000526977 STK31Q9BXU1 1019 aa23.98■■□□□ 1.43
VPS28-207ENST00000526977 HDGFL1Q5TGJ6 251 aa23.96■■□□□ 1.43
VPS28-207ENST00000526977 PIGBQ92521 554 aa23.96■■□□□ 1.43
VPS28-207ENST00000526977 ZNF496Q96IT1 587 aaPredicted RBP23.96■■□□□ 1.43
VPS28-207ENST00000526977 THSD7AQ9UPZ6 1657 aa23.95■■□□□ 1.43
VPS28-207ENST00000526977 SLC4A2P04920 1241 aa23.95■■□□□ 1.42
VPS28-207ENST00000526977 TOGARAM1Q9Y4F4 1720 aa23.95■■□□□ 1.42
VPS28-207ENST00000526977 PCDHB15Q9Y5E8 787 aa23.94■■□□□ 1.42
VPS28-207ENST00000526977 SNRPA1P09661 255 aaKnown RBP23.94■■□□□ 1.42
VPS28-207ENST00000526977 PRIM1P49642 420 aaKnown RBP23.94■■□□□ 1.42
VPS28-207ENST00000526977 BCL9O00512 1426 aa23.94■■□□□ 1.42
VPS28-207ENST00000526977 EIF2S2P20042 333 aaKnown RBP23.93■■□□□ 1.42
VPS28-207ENST00000526977 SYTL4Q96C24 671 aaPredicted RBP23.93■■□□□ 1.42
VPS28-207ENST00000526977 SEPT12Q8IYM1 358 aa23.92■■□□□ 1.42
VPS28-207ENST00000526977 PTPRCP08575 1304 aa23.91■■□□□ 1.42
VPS28-207ENST00000526977 RBM6P78332 1123 aaKnown RBP23.9■■□□□ 1.42
VPS28-207ENST00000526977 NECTIN2Q92692 538 aa23.9■■□□□ 1.42
VPS28-207ENST00000526977 API5Q9BZZ5 524 aaKnown RBP23.9■■□□□ 1.42
VPS28-207ENST00000526977 TMEM57Q8N5G2 664 aa23.89■■□□□ 1.42
VPS28-207ENST00000526977 ATG3Q9NT62 314 aa23.89■■□□□ 1.42
VPS28-207ENST00000526977 DBF4Q9UBU7 674 aaPredicted RBP23.89■■□□□ 1.42
VPS28-207ENST00000526977 ITGB4P16144 1822 aa23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms