RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 COL5A3P25940 1745 aaPredicted RBP13.73□□□□□ -0.21
VPS28-204ENST00000526054 GRIN3BO60391 1043 aa13.73□□□□□ -0.21
VPS28-204ENST00000526054 SSFA2P28290 1259 aa13.73□□□□□ -0.21
VPS28-204ENST00000526054 ASAP1Q9ULH1 1129 aa13.73□□□□□ -0.21
VPS28-204ENST00000526054 CD2APQ9Y5K6 639 aa13.73□□□□□ -0.21
VPS28-204ENST00000526054 KDRP35968 1356 aa13.72□□□□□ -0.21
VPS28-204ENST00000526054 GNPATO15228 680 aa13.72□□□□□ -0.21
VPS28-204ENST00000526054 ATP6V1AP38606 617 aa13.72□□□□□ -0.21
VPS28-204ENST00000526054 CC2D1BQ5T0F9 858 aaKnown RBP13.72□□□□□ -0.21
VPS28-204ENST00000526054 ZNF316A6NFI3 1004 aaPredicted RBP13.71□□□□□ -0.21
VPS28-204ENST00000526054 ITPK1Q13572 414 aa13.71□□□□□ -0.21
VPS28-204ENST00000526054 SMIM5Q71RC9 77 aa13.71□□□□□ -0.21
VPS28-204ENST00000526054 GIGYF1O75420 1035 aaPredicted RBP13.7□□□□□ -0.22
VPS28-204ENST00000526054 HSP90AB1P08238 724 aaKnown RBP13.7□□□□□ -0.22
VPS28-204ENST00000526054 C1QTNF8P60827 252 aa13.7□□□□□ -0.22
VPS28-204ENST00000526054 ATG3Q9NT62 314 aa13.7□□□□□ -0.22
VPS28-204ENST00000526054 KDM6AO15550 1401 aaPredicted RBP13.7□□□□□ -0.22
VPS28-204ENST00000526054 C4AP0C0L4 1744 aa13.7□□□□□ -0.22
VPS28-204ENST00000526054 SENP3-EIF4A1A0A087X0R7 540 aa13.69□□□□□ -0.22
VPS28-204ENST00000526054 DDX10Q13206 875 aaKnown RBP13.69□□□□□ -0.22
VPS28-204ENST00000526054 PLEKHO1Q53GL0 409 aaPredicted RBP13.69□□□□□ -0.22
VPS28-204ENST00000526054 ZNF530Q6P9A1 599 aaPredicted RBP13.69□□□□□ -0.22
VPS28-204ENST00000526054 DCAF5Q96JK2 942 aa13.69□□□□□ -0.22
VPS28-204ENST00000526054 KIF13BQ9NQT8 1826 aa13.69□□□□□ -0.22
VPS28-204ENST00000526054 ERVV-2B6SEH9 535 aa13.68□□□□□ -0.22
VPS28-204ENST00000526054 CNGB1Q14028 1251 aaPredicted RBP13.68□□□□□ -0.22
VPS28-204ENST00000526054 AMOTQ4VCS5 1084 aa13.68□□□□□ -0.22
VPS28-204ENST00000526054 SCN11AQ9UI33 1791 aa13.68□□□□□ -0.22
VPS28-204ENST00000526054 CICQ96RK0 1608 aaPredicted RBP13.68□□□□□ -0.22
VPS28-204ENST00000526054 ATP10DQ9P241 1426 aa13.67□□□□□ -0.22
VPS28-204ENST00000526054 AEBP1Q8IUX7 1158 aa13.67□□□□□ -0.22
VPS28-204ENST00000526054 RBM42Q9BTD8 480 aaKnown RBP13.67□□□□□ -0.22
VPS28-204ENST00000526054 CABP4P57796 275 aa13.66□□□□□ -0.22
VPS28-204ENST00000526054 C1orf141Q5JVX7 400 aa13.66□□□□□ -0.22
VPS28-204ENST00000526054 WWC3Q9ULE0 1092 aa13.66□□□□□ -0.22
VPS28-204ENST00000526054 RTCBQ9Y3I0 505 aaKnown RBP13.66□□□□□ -0.22
VPS28-204ENST00000526054 TJP1Q07157 1748 aa13.66□□□□□ -0.22
VPS28-204ENST00000526054 KIAA1551Q9HCM1 1747 aa13.66□□□□□ -0.22
VPS28-204ENST00000526054 VIRMAQ69YN4 1812 aaKnown RBP13.66□□□□□ -0.22
VPS28-204ENST00000526054 CNTNAP4Q9C0A0 1308 aa13.65□□□□□ -0.22
VPS28-204ENST00000526054 N4BP2Q86UW6 1770 aaPredicted RBP13.65□□□□□ -0.22
VPS28-204ENST00000526054 MYH14Q7Z406 1995 aaKnown RBP13.64□□□□□ -0.23
VPS28-204ENST00000526054 PXDNLA1KZ92 1463 aa13.64□□□□□ -0.23
VPS28-204ENST00000526054 ADCY9O60503 1353 aa13.64□□□□□ -0.23
VPS28-204ENST00000526054 MMP10P09238 476 aa13.64□□□□□ -0.23
VPS28-204ENST00000526054 MTHFSP49914 203 aa13.64□□□□□ -0.23
VPS28-204ENST00000526054 TRAPPC3LQ5T215 181 aa13.64□□□□□ -0.23
VPS28-204ENST00000526054 SULT6B1Q6IMI4 303 aa13.64□□□□□ -0.23
VPS28-204ENST00000526054 SLC4A9Q96Q91 983 aa13.64□□□□□ -0.23
VPS28-204ENST00000526054 ADRA2BP18089 450 aa13.63□□□□□ -0.23
VPS28-204ENST00000526054 CEP350Q5VT06 3117 aa13.63□□□□□ -0.23
VPS28-204ENST00000526054 C10orf71Q711Q0 1435 aa13.63□□□□□ -0.23
VPS28-204ENST00000526054 RC3H1Q5TC82 1133 aaKnown RBP13.62□□□□□ -0.23
VPS28-204ENST00000526054 MRC1P22897 1456 aa13.61□□□□□ -0.23
VPS28-204ENST00000526054 BRCA1P38398 1863 aaKnown RBP13.61□□□□□ -0.23
VPS28-204ENST00000526054 PTCD1O75127 700 aaKnown RBP13.61□□□□□ -0.23
VPS28-204ENST00000526054 IL13P35225 146 aa13.61□□□□□ -0.23
VPS28-204ENST00000526054 RFC4P35249 363 aa13.61□□□□□ -0.23
VPS28-204ENST00000526054 NLGN1Q8N2Q7 840 aa13.61□□□□□ -0.23
VPS28-204ENST00000526054 ARHGEF1Q92888 912 aaKnown RBP13.61□□□□□ -0.23
VPS28-204ENST00000526054 GPBP1L1Q9HC44 474 aaPredicted RBP13.61□□□□□ -0.23
VPS28-204ENST00000526054 RPS6KA4O75676 772 aa13.6□□□□□ -0.23
VPS28-204ENST00000526054 NFATC2IPQ8NCF5 419 aa13.6□□□□□ -0.23
VPS28-204ENST00000526054 GYS1P13807 737 aa13.59□□□□□ -0.23
VPS28-204ENST00000526054 PPP2R1AP30153 589 aa13.59□□□□□ -0.23
VPS28-204ENST00000526054 CRKLP46109 303 aaKnown RBP13.59□□□□□ -0.23
VPS28-204ENST00000526054 RALBP1Q15311 655 aa13.59□□□□□ -0.23
VPS28-204ENST00000526054 ZNF526Q8TF50 670 aaPredicted RBP13.59□□□□□ -0.23
VPS28-204ENST00000526054 CFAP53Q96M91 514 aa13.59□□□□□ -0.23
VPS28-204ENST00000526054 CCDC87Q9NVE4 849 aa13.59□□□□□ -0.23
VPS28-204ENST00000526054 ADAMTS7Q9UKP4 1686 aa13.59□□□□□ -0.23
VPS28-204ENST00000526054 AKAP4Q5JQC9 854 aa13.58□□□□□ -0.24
VPS28-204ENST00000526054 PARP3Q9Y6F1 533 aa13.58□□□□□ -0.24
VPS28-204ENST00000526054 ARFGEF1Q9Y6D6 1849 aa13.57□□□□□ -0.24
VPS28-204ENST00000526054 COL3A1P02461 1466 aaPredicted RBP13.57□□□□□ -0.24
VPS28-204ENST00000526054 HMOX1P09601 288 aa13.57□□□□□ -0.24
VPS28-204ENST00000526054 TGFB2P61812 414 aa13.57□□□□□ -0.24
VPS28-204ENST00000526054 USP42Q9H9J4 1324 aaKnown RBP13.57□□□□□ -0.24
VPS28-204ENST00000526054 UBR2Q8IWV8 1755 aa13.56□□□□□ -0.24
VPS28-204ENST00000526054 KCPQ6ZWJ8 1503 aa13.56□□□□□ -0.24
VPS28-204ENST00000526054 DIAPH1O60610 1272 aaKnown RBP13.56□□□□□ -0.24
VPS28-204ENST00000526054 SLC52A2Q9HAB3 445 aa13.56□□□□□ -0.24
VPS28-204ENST00000526054 BCS1LQ9Y276 419 aa13.56□□□□□ -0.24
VPS28-204ENST00000526054 A0A0G2JLW4 131 aa13.55□□□□□ -0.24
VPS28-204ENST00000526054 SRP68Q9UHB9 627 aaKnown RBP13.55□□□□□ -0.24
VPS28-204ENST00000526054 MYBBP1AQ9BQG0 1328 aaKnown RBP13.55□□□□□ -0.24
VPS28-204ENST00000526054 DPEP1P16444 411 aa13.54□□□□□ -0.24
VPS28-204ENST00000526054 RNMTO43148 476 aaKnown RBP13.53□□□□□ -0.24
VPS28-204ENST00000526054 FKBP8Q14318 412 aa13.53□□□□□ -0.24
VPS28-204ENST00000526054 INTS5Q6P9B9 1019 aaKnown RBP13.53□□□□□ -0.24
VPS28-204ENST00000526054 DNAJC10Q8IXB1 793 aa13.53□□□□□ -0.24
VPS28-204ENST00000526054 PRKRIP1Q9H875 184 aaPredicted RBP13.53□□□□□ -0.24
VPS28-204ENST00000526054 LGR6Q9HBX8 967 aa13.53□□□□□ -0.24
VPS28-204ENST00000526054 FCHSD2O94868 740 aa13.52□□□□□ -0.25
VPS28-204ENST00000526054 DDR1Q08345 913 aa13.52□□□□□ -0.25
VPS28-204ENST00000526054 MTHFSDQ2M296 383 aaKnown RBP13.52□□□□□ -0.25
VPS28-204ENST00000526054 NUDCQ9Y266 331 aa13.52□□□□□ -0.25
VPS28-204ENST00000526054 SOS1Q07889 1333 aaPredicted RBP13.52□□□□□ -0.25
VPS28-204ENST00000526054 COL15A1P39059 1388 aa13.52□□□□□ -0.25
VPS28-204ENST00000526054 AFDNP55196 1824 aaKnown RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms