RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 DEPDC4Q8N2C3 294 aa7.98□□□□□ -1.13
USP48-211ENST00000526044 A0A1W2PRU2 124 aa7.97□□□□□ -1.13
USP48-211ENST00000526044 USP17L3A6NCW0 530 aa7.97□□□□□ -1.13
USP48-211ENST00000526044 USP17L4A6NCW7 530 aa7.97□□□□□ -1.13
USP48-211ENST00000526044 USP17L2Q6R6M4 530 aa7.97□□□□□ -1.13
USP48-211ENST00000526044 USP17L1Q7RTZ2 530 aa7.97□□□□□ -1.13
USP48-211ENST00000526044 INSM2Q96T92 566 aaPredicted RBP7.97□□□□□ -1.13
USP48-211ENST00000526044 ITGA6P23229 1130 aa7.96□□□□□ -1.14
USP48-211ENST00000526044 VWA5B2Q8N398 1253 aa7.96□□□□□ -1.14
USP48-211ENST00000526044 MEN1O00255 615 aa7.95□□□□□ -1.14
USP48-211ENST00000526044 SLURP2P0DP57 97 aa7.95□□□□□ -1.14
USP48-211ENST00000526044 MAP3K10Q02779 954 aa7.95□□□□□ -1.14
USP48-211ENST00000526044 TRIM50Q86XT4 487 aa7.95□□□□□ -1.14
USP48-211ENST00000526044 NLRP3Q96P20 1036 aa7.95□□□□□ -1.14
USP48-211ENST00000526044 ARHGEF10LQ9HCE6 1279 aa7.95□□□□□ -1.14
USP48-211ENST00000526044 POLMQ9NP87 494 aaPredicted RBP7.95□□□□□ -1.14
USP48-211ENST00000526044 TIMELESSQ9UNS1 1208 aa7.95□□□□□ -1.14
USP48-211ENST00000526044 MAFBQ9Y5Q3 323 aaPredicted RBP7.95□□□□□ -1.14
USP48-211ENST00000526044 SLC35F4A4IF30 521 aa7.94□□□□□ -1.14
USP48-211ENST00000526044 ARID3CA6NKF2 412 aa7.94□□□□□ -1.14
USP48-211ENST00000526044 LMOD1P29536 600 aaPredicted RBP7.94□□□□□ -1.14
USP48-211ENST00000526044 CTSOP43234 321 aaPredicted RBP7.94□□□□□ -1.14
USP48-211ENST00000526044 CLN3Q13286 438 aa7.94□□□□□ -1.14
USP48-211ENST00000526044 ESCO1Q5FWF5 840 aa7.94□□□□□ -1.14
USP48-211ENST00000526044 RNFT1Q5M7Z0 435 aa7.94□□□□□ -1.14
USP48-211ENST00000526044 MKRN1Q9UHC7 482 aaKnown RBP7.94□□□□□ -1.14
USP48-211ENST00000526044 PCDHGA11Q9Y5H2 935 aa7.94□□□□□ -1.14
USP48-211ENST00000526044 ARHGEF15O94989 841 aa7.93□□□□□ -1.14
USP48-211ENST00000526044 GPC1P35052 558 aa7.93□□□□□ -1.14
USP48-211ENST00000526044 RNF144AP50876 292 aaPredicted RBP7.93□□□□□ -1.14
USP48-211ENST00000526044 ATP1A2P50993 1020 aa7.93□□□□□ -1.14
USP48-211ENST00000526044 GTF2IP78347 998 aa7.93□□□□□ -1.14
USP48-211ENST00000526044 WHAMMQ8TF30 809 aa7.93□□□□□ -1.14
USP48-211ENST00000526044 ENAMQ9NRM1 1142 aa7.93□□□□□ -1.14
USP48-211ENST00000526044 RAB6BQ9NRW1 208 aa7.93□□□□□ -1.14
USP48-211ENST00000526044 SERPINA10Q9UK55 444 aa7.93□□□□□ -1.14
USP48-211ENST00000526044 CNKSR1Q969H4 720 aa7.92□□□□□ -1.14
USP48-211ENST00000526044 CCDC97Q96F63 343 aaPredicted RBP7.92□□□□□ -1.14
USP48-211ENST00000526044 XAGE2Q96GT9 111 aa7.92□□□□□ -1.14
USP48-211ENST00000526044 ESYT1Q9BSJ8 1104 aa7.92□□□□□ -1.14
USP48-211ENST00000526044 IL2RAP01589 272 aa7.91□□□□□ -1.14
USP48-211ENST00000526044 PSME1Q06323 249 aa7.91□□□□□ -1.14
USP48-211ENST00000526044 CFAP70Q5T0N1 1121 aa7.91□□□□□ -1.14
USP48-211ENST00000526044 FOXD4L5Q5VV16 416 aaPredicted RBP7.91□□□□□ -1.14
USP48-211ENST00000526044 RNF217Q8TC41 542 aa7.91□□□□□ -1.14
USP48-211ENST00000526044 ETNK1Q9HBU6 452 aa7.91□□□□□ -1.14
USP48-211ENST00000526044 ADAMTS2O95450 1211 aa7.9□□□□□ -1.14
USP48-211ENST00000526044 INHAP05111 366 aa7.9□□□□□ -1.14
USP48-211ENST00000526044 SCNN1DP51172 638 aa7.9□□□□□ -1.14
USP48-211ENST00000526044 GDF10P55107 478 aa7.9□□□□□ -1.14
USP48-211ENST00000526044 CENPCQ03188 943 aa7.9□□□□□ -1.14
USP48-211ENST00000526044 SLC27A3Q5K4L6 730 aa7.9□□□□□ -1.14
USP48-211ENST00000526044 OGFOD1Q8N543 542 aa7.9□□□□□ -1.14
USP48-211ENST00000526044 VRTNQ9H8Y1 702 aa7.9□□□□□ -1.14
USP48-211ENST00000526044 DNAAF2Q9NVR5 837 aaKnown RBP7.9□□□□□ -1.14
USP48-211ENST00000526044 WASLO00401 505 aaPredicted RBP7.89□□□□□ -1.15
USP48-211ENST00000526044 ZBTB7BO15156 539 aaPredicted RBP7.89□□□□□ -1.15
USP48-211ENST00000526044 STAU1O95793 577 aaKnown RBP7.89□□□□□ -1.15
USP48-211ENST00000526044 RASA1P20936 1047 aa7.89□□□□□ -1.15
USP48-211ENST00000526044 RFX1P22670 979 aa7.89□□□□□ -1.15
USP48-211ENST00000526044 CLDN10P78369 228 aa7.89□□□□□ -1.15
USP48-211ENST00000526044 KANK4Q5T7N3 995 aaPredicted RBP7.89□□□□□ -1.15
USP48-211ENST00000526044 LYSMD3Q7Z3D4 306 aa7.89□□□□□ -1.15
USP48-211ENST00000526044 LARGE2Q8N3Y3 721 aa7.89□□□□□ -1.15
USP48-211ENST00000526044 GRIP2Q9C0E4 1043 aa7.89□□□□□ -1.15
USP48-211ENST00000526044 HRH3Q9Y5N1 445 aa7.89□□□□□ -1.15
USP48-211ENST00000526044 PHF20L1A8MW92 1017 aa7.88□□□□□ -1.15
USP48-211ENST00000526044 TMEM229AB2RXF0 380 aa7.88□□□□□ -1.15
USP48-211ENST00000526044 SRSF11Q05519 484 aaKnown RBP7.88□□□□□ -1.15
USP48-211ENST00000526044 CCDC102BQ68D86 513 aa7.88□□□□□ -1.15
USP48-211ENST00000526044 LARP1Q6PKG0 1096 aaKnown RBP7.88□□□□□ -1.15
USP48-211ENST00000526044 PRICKLE2Q7Z3G6 844 aa7.88□□□□□ -1.15
USP48-211ENST00000526044 MSTNO14793 375 aa7.87□□□□□ -1.15
USP48-211ENST00000526044 BACH1O14867 736 aa7.87□□□□□ -1.15
USP48-211ENST00000526044 GTF2E1P29083 439 aaPredicted RBP7.87□□□□□ -1.15
USP48-211ENST00000526044 ZSCAN10Q96SZ4 725 aaPredicted RBP7.87□□□□□ -1.15
USP48-211ENST00000526044 C1orf115Q9H7X2 142 aa7.87□□□□□ -1.15
USP48-211ENST00000526044 RBM19Q9Y4C8 960 aaKnown RBP7.87□□□□□ -1.15
USP48-211ENST00000526044 SUPT5HO00267 1087 aaKnown RBP7.86□□□□□ -1.15
USP48-211ENST00000526044 LYPD4Q6UWN0 246 aa7.86□□□□□ -1.15
USP48-211ENST00000526044 PODNQ7Z5L7 613 aa7.86□□□□□ -1.15
USP48-211ENST00000526044 CCDC82Q8N4S0 544 aa7.86□□□□□ -1.15
USP48-211ENST00000526044 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.86□□□□□ -1.15
USP48-211ENST00000526044 TPCN2Q8NHX9 752 aa7.86□□□□□ -1.15
USP48-211ENST00000526044 SLC4A9Q96Q91 983 aa7.86□□□□□ -1.15
USP48-211ENST00000526044 FHDC1Q9C0D6 1143 aaPredicted RBP7.86□□□□□ -1.15
USP48-211ENST00000526044 SERTAD1Q9UHV2 236 aa7.86□□□□□ -1.15
USP48-211ENST00000526044 KIAA1024Q9UPX6 916 aa7.86□□□□□ -1.15
USP48-211ENST00000526044 CECR2Q9BXF3 1484 aa7.86□□□□□ -1.15
USP48-211ENST00000526044 SMTNP53814 917 aa7.85□□□□□ -1.15
USP48-211ENST00000526044 TLR1Q15399 786 aa7.85□□□□□ -1.15
USP48-211ENST00000526044 TMEM214Q6NUQ4 689 aaKnown RBP7.85□□□□□ -1.15
USP48-211ENST00000526044 SIX5Q8N196 739 aa7.85□□□□□ -1.15
USP48-211ENST00000526044 ZNF594Q96JF6 807 aaPredicted RBP7.85□□□□□ -1.15
USP48-211ENST00000526044 ZNF358Q9NW07 568 aa7.85□□□□□ -1.15
USP48-211ENST00000526044 FAM196BA6NMK8 535 aa7.84□□□□□ -1.15
USP48-211ENST00000526044 SPATA31C2B4DYI2 1134 aa7.84□□□□□ -1.15
USP48-211ENST00000526044 CELA2BP08218 269 aaPredicted RBP7.84□□□□□ -1.15
USP48-211ENST00000526044 POU4F2Q12837 409 aa7.84□□□□□ -1.15
USP48-211ENST00000526044 PTK7Q13308 1070 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms