RNA–Protein interactions for RNA: ENST00000525257.1

USP47-205, Transcript of ubiquitin specific peptidase 47, human

TSL 4

Gene USP47, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP47-205	ENST00000525257	CLSPN	Q9HAW4	1339 aa		32.97	■■■□□ 2.87
USP47-205	ENST00000525257	PLEKHG2	Q9H7P9	1386 aa		32.96	■■■□□ 2.87
USP47-205	ENST00000525257	KDR	P35968	1356 aa		32.96	■■■□□ 2.87
USP47-205	ENST00000525257	ADCY9	O60503	1353 aa		32.95	■■■□□ 2.86
USP47-205	ENST00000525257	PANK3	Q9H999	370 aa		32.93	■■■□□ 2.86
USP47-205	ENST00000525257	CEP350	Q5VT06	3117 aa		32.93	■■■□□ 2.86
USP47-205	ENST00000525257	HSPA5	P11021	654 aa	Known RBP	32.92	■■■□□ 2.86
USP47-205	ENST00000525257	ZNF526	Q8TF50	670 aa	Predicted RBP	32.92	■■■□□ 2.86
USP47-205	ENST00000525257	RBM42	Q9BTD8	480 aa	Known RBP	32.92	■■■□□ 2.86
USP47-205	ENST00000525257	GPBP1L1	Q9HC44	474 aa	Predicted RBP	32.92	■■■□□ 2.86
USP47-205	ENST00000525257	ERVV-2	B6SEH9	535 aa		32.91	■■■□□ 2.86
USP47-205	ENST00000525257	MMP10	P09238	476 aa		32.91	■■■□□ 2.86
USP47-205	ENST00000525257	EIF4G2	P78344	907 aa	Known RBP eCLIP	32.91	■■■□□ 2.86	2e-7	■■■■□ 23
USP47-205	ENST00000525257	SLC4A9	Q96Q91	983 aa		32.91	■■■□□ 2.86
USP47-205	ENST00000525257	DCAF5	Q96JK2	942 aa		32.9	■■■□□ 2.86
USP47-205	ENST00000525257	RTCB	Q9Y3I0	505 aa	Known RBP	32.9	■■■□□ 2.86
USP47-205	ENST00000525257	ZNF831	Q5JPB2	1677 aa		32.9	■■■□□ 2.86
USP47-205	ENST00000525257	COL5A3	P25940	1745 aa	Predicted RBP	32.89	■■■□□ 2.86
USP47-205	ENST00000525257	HSP90AB1	P08238	724 aa	Known RBP	32.89	■■■□□ 2.86
USP47-205	ENST00000525257	PLEKHO1	Q53GL0	409 aa	Predicted RBP	32.89	■■■□□ 2.86
USP47-205	ENST00000525257	ZNF530	Q6P9A1	599 aa	Predicted RBP	32.89	■■■□□ 2.86
USP47-205	ENST00000525257	KDM6A	O15550	1401 aa	Predicted RBP	32.88	■■■□□ 2.85
USP47-205	ENST00000525257	TRAPPC3L	Q5T215	181 aa		32.88	■■■□□ 2.85
USP47-205	ENST00000525257	CIC	Q96RK0	1608 aa	Predicted RBP	32.88	■■■□□ 2.85
USP47-205	ENST00000525257	KIF13B	Q9NQT8	1826 aa		32.86	■■■□□ 2.85
USP47-205	ENST00000525257	PXDNL	A1KZ92	1463 aa		32.85	■■■□□ 2.85
USP47-205	ENST00000525257	KIAA1551	Q9HCM1	1747 aa		32.85	■■■□□ 2.85
USP47-205	ENST00000525257	CABP4	P57796	275 aa		32.84	■■■□□ 2.85
USP47-205	ENST00000525257	AEBP1	Q8IUX7	1158 aa		32.84	■■■□□ 2.85
USP47-205	ENST00000525257	N4BP2	Q86UW6	1770 aa	Predicted RBP	32.83	■■■□□ 2.85
USP47-205	ENST00000525257	AMOT	Q4VCS5	1084 aa		32.83	■■■□□ 2.85
USP47-205	ENST00000525257	MORC1	Q86VD1	984 aa		32.83	■■■□□ 2.85
USP47-205	ENST00000525257	CNTNAP4	Q9C0A0	1308 aa		32.82	■■■□□ 2.84
USP47-205	ENST00000525257	RC3H1	Q5TC82	1133 aa	Known RBP	32.82	■■■□□ 2.84
USP47-205	ENST00000525257	NLGN1	Q8N2Q7	840 aa		32.82	■■■□□ 2.84
USP47-205	ENST00000525257	ARHGEF1	Q92888	912 aa	Known RBP	32.82	■■■□□ 2.84
USP47-205	ENST00000525257	ADRA2B	P18089	450 aa		32.8	■■■□□ 2.84
USP47-205	ENST00000525257	C4A	P0C0L4	1744 aa		32.8	■■■□□ 2.84
USP47-205	ENST00000525257	MYH14	Q7Z406	1995 aa	Known RBP	32.79	■■■□□ 2.84
USP47-205	ENST00000525257	C10orf71	Q711Q0	1435 aa		32.79	■■■□□ 2.84
USP47-205	ENST00000525257	MTHFS	P49914	203 aa		32.79	■■■□□ 2.84
USP47-205	ENST00000525257	C1orf141	Q5JVX7	400 aa		32.79	■■■□□ 2.84
USP47-205	ENST00000525257	RPS6KA4	O75676	772 aa		32.78	■■■□□ 2.84
USP47-205	ENST00000525257	RFC4	P35249	363 aa		32.78	■■■□□ 2.84
USP47-205	ENST00000525257	PTCD1	O75127	700 aa	Known RBP	32.77	■■■□□ 2.84
USP47-205	ENST00000525257	GYS1	P13807	737 aa		32.77	■■■□□ 2.84
USP47-205	ENST00000525257	TGFB2	P61812	414 aa		32.77	■■■□□ 2.84
USP47-205	ENST00000525257		A0A0G2JLW4	131 aa		32.76	■■■□□ 2.83
USP47-205	ENST00000525257	SULT6B1	Q6IMI4	303 aa		32.76	■■■□□ 2.83
USP47-205	ENST00000525257	BCS1L	Q9Y276	419 aa		32.76	■■■□□ 2.83
USP47-205	ENST00000525257	NFATC2IP	Q8NCF5	419 aa		32.74	■■■□□ 2.83
USP47-205	ENST00000525257	CCDC87	Q9NVE4	849 aa		32.74	■■■□□ 2.83
USP47-205	ENST00000525257	PARP3	Q9Y6F1	533 aa		32.73	■■■□□ 2.83
USP47-205	ENST00000525257	TJP1	Q07157	1748 aa		32.72	■■■□□ 2.83
USP47-205	ENST00000525257	KNSTRN	Q9Y448	316 aa		32.72	■■■□□ 2.83
USP47-205	ENST00000525257	CRKL	P46109	303 aa	Known RBP	32.71	■■■□□ 2.83
USP47-205	ENST00000525257	SCN11A	Q9UI33	1791 aa		32.7	■■■□□ 2.83
USP47-205	ENST00000525257	DPEP1	P16444	411 aa		32.7	■■■□□ 2.83
USP47-205	ENST00000525257	HSPA6	P17066	643 aa		32.7	■■■□□ 2.83
USP47-205	ENST00000525257	IL13	P35225	146 aa		32.69	■■■□□ 2.82
USP47-205	ENST00000525257	BRCA1	P38398	1863 aa	Known RBP	32.69	■■■□□ 2.82
USP47-205	ENST00000525257	SRP68	Q9UHB9	627 aa	Known RBP	32.68	■■■□□ 2.82
USP47-205	ENST00000525257	KIF3C	O14782	793 aa		32.67	■■■□□ 2.82
USP47-205	ENST00000525257	FCHSD2	O94868	740 aa		32.66	■■■□□ 2.82
USP47-205	ENST00000525257	ARHGAP27	Q6ZUM4	889 aa		32.66	■■■□□ 2.82
USP47-205	ENST00000525257	CCER1	Q8TC90	406 aa	Predicted RBP	32.64	■■■□□ 2.82
USP47-205	ENST00000525257	USP42	Q9H9J4	1324 aa	Known RBP	32.64	■■■□□ 2.82
USP47-205	ENST00000525257	FKBP8	Q14318	412 aa		32.63	■■■□□ 2.81
USP47-205	ENST00000525257	AKAP4	Q5JQC9	854 aa		32.62	■■■□□ 2.81
USP47-205	ENST00000525257	AMER1	Q5JTC6	1135 aa	Predicted RBP	32.61	■■■□□ 2.81
USP47-205	ENST00000525257	KCNA3	P22001	575 aa		32.6	■■■□□ 2.81
USP47-205	ENST00000525257	DDR1	Q08345	913 aa		32.6	■■■□□ 2.81
USP47-205	ENST00000525257	INTS5	Q6P9B9	1019 aa	Known RBP	32.6	■■■□□ 2.81
USP47-205	ENST00000525257	ARFGEF1	Q9Y6D6	1849 aa		32.6	■■■□□ 2.81
USP47-205	ENST00000525257	ADAMTS7	Q9UKP4	1686 aa		32.59	■■■□□ 2.81
USP47-205	ENST00000525257	SLC52A2	Q9HAB3	445 aa		32.59	■■■□□ 2.81
USP47-205	ENST00000525257	VIRMA	Q69YN4	1812 aa	Known RBP	32.58	■■■□□ 2.81
USP47-205	ENST00000525257	DNAJC10	Q8IXB1	793 aa		32.58	■■■□□ 2.81
USP47-205	ENST00000525257	LGR6	Q9HBX8	967 aa		32.58	■■■□□ 2.81
USP47-205	ENST00000525257	HMOX1	P09601	288 aa		32.57	■■■□□ 2.8
USP47-205	ENST00000525257	MRC1	P22897	1456 aa		32.56	■■■□□ 2.8
USP47-205	ENST00000525257	PIM2	Q9P1W9	311 aa		32.56	■■■□□ 2.8
USP47-205	ENST00000525257	KIF7	Q2M1P5	1343 aa		32.54	■■■□□ 2.8
USP47-205	ENST00000525257	RNMT	O43148	476 aa	Known RBP	32.53	■■■□□ 2.8
USP47-205	ENST00000525257	SLC39A6	Q13433	755 aa		32.53	■■■□□ 2.8
USP47-205	ENST00000525257	C9orf131	Q5VYM1	1079 aa		32.53	■■■□□ 2.8
USP47-205	ENST00000525257	POLRMT	O00411	1230 aa	Known RBP	32.52	■■■□□ 2.8
USP47-205	ENST00000525257	ZPR1	O75312	459 aa		32.52	■■■□□ 2.8
USP47-205	ENST00000525257	CHRNA5	P30532	468 aa		32.52	■■■□□ 2.8
USP47-205	ENST00000525257	DALRD3	Q5D0E6	543 aa	Known RBP	32.52	■■■□□ 2.8
USP47-205	ENST00000525257	IFFO2	Q5TF58	517 aa		32.52	■■■□□ 2.8
USP47-205	ENST00000525257	USPL1	Q5W0Q7	1092 aa		32.52	■■■□□ 2.8
USP47-205	ENST00000525257	NMRK2	Q9NPI5	230 aa		32.52	■■■□□ 2.8
USP47-205	ENST00000525257	SOS1	Q07889	1333 aa	Predicted RBP	32.51	■■■□□ 2.8
USP47-205	ENST00000525257	KCP	Q6ZWJ8	1503 aa		32.51	■■■□□ 2.8
USP47-205	ENST00000525257	TOMM70	O94826	608 aa		32.5	■■■□□ 2.79
USP47-205	ENST00000525257	TM4SF1	P30408	202 aa		32.5	■■■□□ 2.79
USP47-205	ENST00000525257	CYP19A1	P11511	503 aa	Predicted RBP	32.49	■■■□□ 2.79
USP47-205	ENST00000525257	MTHFSD	Q2M296	383 aa	Known RBP	32.48	■■■□□ 2.79
USP47-205	ENST00000525257	COL15A1	P39059	1388 aa		32.46	■■■□□ 2.79

Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms