RNA–Protein interactions for RNA: ENST00000524533.1

HIF3A-208, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 507 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-208ENST00000524533 ATG3Q9NT62 314 aa22.27■■□□□ 1.16
HIF3A-208ENST00000524533 KDRP35968 1356 aa22.26■■□□□ 1.15
HIF3A-208ENST00000524533 GRIN3BO60391 1043 aa22.26■■□□□ 1.15
HIF3A-208ENST00000524533 PLEKHO1Q53GL0 409 aaPredicted RBP22.26■■□□□ 1.15
HIF3A-208ENST00000524533 COL5A3P25940 1745 aaPredicted RBP22.26■■□□□ 1.15
HIF3A-208ENST00000524533 GNPATO15228 680 aa22.25■■□□□ 1.15
HIF3A-208ENST00000524533 HSP90AB1P08238 724 aaKnown RBP22.25■■□□□ 1.15
HIF3A-208ENST00000524533 ZNF530Q6P9A1 599 aaPredicted RBP22.25■■□□□ 1.15
HIF3A-208ENST00000524533 DCAF5Q96JK2 942 aa22.25■■□□□ 1.15
HIF3A-208ENST00000524533 KNSTRNQ9Y448 316 aa22.25■■□□□ 1.15
HIF3A-208ENST00000524533 KDM6AO15550 1401 aaPredicted RBP22.24■■□□□ 1.15
HIF3A-208ENST00000524533 ERVV-2B6SEH9 535 aa22.24■■□□□ 1.15
HIF3A-208ENST00000524533 AMOTQ4VCS5 1084 aa22.23■■□□□ 1.15
HIF3A-208ENST00000524533 AEBP1Q8IUX7 1158 aa22.22■■□□□ 1.15
HIF3A-208ENST00000524533 C1orf141Q5JVX7 400 aa22.2■■□□□ 1.14
HIF3A-208ENST00000524533 RBM42Q9BTD8 480 aaKnown RBP22.2■■□□□ 1.14
HIF3A-208ENST00000524533 SCN11AQ9UI33 1791 aa22.18■■□□□ 1.14
HIF3A-208ENST00000524533 KIF7Q2M1P5 1343 aa22.18■■□□□ 1.14
HIF3A-208ENST00000524533 CABP4P57796 275 aa22.18■■□□□ 1.14
HIF3A-208ENST00000524533 C1QTNF8P60827 252 aa22.18■■□□□ 1.14
HIF3A-208ENST00000524533 SULT6B1Q6IMI4 303 aa22.18■■□□□ 1.14
HIF3A-208ENST00000524533 SLC4A9Q96Q91 983 aa22.18■■□□□ 1.14
HIF3A-208ENST00000524533 C4AP0C0L4 1744 aa22.17■■□□□ 1.14
HIF3A-208ENST00000524533 GIGYF1O75420 1035 aaPredicted RBP22.17■■□□□ 1.14
HIF3A-208ENST00000524533 MTHFSP49914 203 aa22.17■■□□□ 1.14
HIF3A-208ENST00000524533 RTCBQ9Y3I0 505 aaKnown RBP22.17■■□□□ 1.14
HIF3A-208ENST00000524533 KIF13BQ9NQT8 1826 aa22.16■■□□□ 1.14
HIF3A-208ENST00000524533 IL13P35225 146 aa22.16■■□□□ 1.14
HIF3A-208ENST00000524533 AMER1Q5JTC6 1135 aaPredicted RBP22.16■■□□□ 1.14
HIF3A-208ENST00000524533 CICQ96RK0 1608 aaPredicted RBP22.16■■□□□ 1.14
HIF3A-208ENST00000524533 TJP1Q07157 1748 aa22.15■■□□□ 1.14
HIF3A-208ENST00000524533 CNTNAP4Q9C0A0 1308 aa22.15■■□□□ 1.14
HIF3A-208ENST00000524533 MMP10P09238 476 aa22.14■■□□□ 1.13
HIF3A-208ENST00000524533 TRAPPC3LQ5T215 181 aa22.14■■□□□ 1.13
HIF3A-208ENST00000524533 RC3H1Q5TC82 1133 aaKnown RBP22.14■■□□□ 1.13
HIF3A-208ENST00000524533 KIAA1551Q9HCM1 1747 aa22.14■■□□□ 1.13
HIF3A-208ENST00000524533 ATP10DQ9P241 1426 aa22.14■■□□□ 1.13
HIF3A-208ENST00000524533 SENP3-EIF4A1A0A087X0R7 540 aa22.13■■□□□ 1.13
HIF3A-208ENST00000524533 ADRA2BP18089 450 aa22.13■■□□□ 1.13
HIF3A-208ENST00000524533 WWC3Q9ULE0 1092 aa22.13■■□□□ 1.13
HIF3A-208ENST00000524533 MYH14Q7Z406 1995 aaKnown RBP22.12■■□□□ 1.13
HIF3A-208ENST00000524533 VIRMAQ69YN4 1812 aaKnown RBP22.12■■□□□ 1.13
HIF3A-208ENST00000524533 PTCD1O75127 700 aaKnown RBP22.11■■□□□ 1.13
HIF3A-208ENST00000524533 NFATC2IPQ8NCF5 419 aa22.11■■□□□ 1.13
HIF3A-208ENST00000524533 PXDNLA1KZ92 1463 aa22.1■■□□□ 1.13
HIF3A-208ENST00000524533 N4BP2Q86UW6 1770 aaPredicted RBP22.1■■□□□ 1.13
HIF3A-208ENST00000524533 RPS6KA4O75676 772 aa22.1■■□□□ 1.13
HIF3A-208ENST00000524533 NLGN1Q8N2Q7 840 aa22.1■■□□□ 1.13
HIF3A-208ENST00000524533 ARHGEF1Q92888 912 aaKnown RBP22.1■■□□□ 1.13
HIF3A-208ENST00000524533 ADCY9O60503 1353 aa22.1■■□□□ 1.13
HIF3A-208ENST00000524533 C10orf71Q711Q0 1435 aa22.09■■□□□ 1.13
HIF3A-208ENST00000524533 RFC4P35249 363 aa22.09■■□□□ 1.13
HIF3A-208ENST00000524533 MRC1P22897 1456 aa22.09■■□□□ 1.13
HIF3A-208ENST00000524533 AKAP4Q5JQC9 854 aa22.08■■□□□ 1.13
HIF3A-208ENST00000524533 GYS1P13807 737 aa22.07■■□□□ 1.12
HIF3A-208ENST00000524533 HMOX1P09601 288 aa22.06■■□□□ 1.12
HIF3A-208ENST00000524533 CRKLP46109 303 aaKnown RBP22.06■■□□□ 1.12
HIF3A-208ENST00000524533 ADAMTS7Q9UKP4 1686 aa22.06■■□□□ 1.12
HIF3A-208ENST00000524533 CC2D1BQ5T0F9 858 aaKnown RBP22.05■■□□□ 1.12
HIF3A-208ENST00000524533 SLC52A2Q9HAB3 445 aa22.05■■□□□ 1.12
HIF3A-208ENST00000524533 PER1O15534 1290 aaPredicted RBP22.04■■□□□ 1.12
HIF3A-208ENST00000524533 CCDC87Q9NVE4 849 aa22.04■■□□□ 1.12
HIF3A-208ENST00000524533 PARP3Q9Y6F1 533 aa22.04■■□□□ 1.12
HIF3A-208ENST00000524533 BRCA1P38398 1863 aaKnown RBP22.03■■□□□ 1.12
HIF3A-208ENST00000524533 DIAPH1O60610 1272 aaKnown RBP22.03■■□□□ 1.12
HIF3A-208ENST00000524533 TGFB2P61812 414 aa22.03■■□□□ 1.12
HIF3A-208ENST00000524533 GPBP1L1Q9HC44 474 aaPredicted RBP22.03■■□□□ 1.12
HIF3A-208ENST00000524533 LGR6Q9HBX8 967 aa22.02■■□□□ 1.12
HIF3A-208ENST00000524533 USP42Q9H9J4 1324 aaKnown RBP22.02■■□□□ 1.12
HIF3A-208ENST00000524533 COL3A1P02461 1466 aaPredicted RBP22.02■■□□□ 1.12
HIF3A-208ENST00000524533 KCPQ6ZWJ8 1503 aa22.01■■□□□ 1.11
HIF3A-208ENST00000524533 RNMTO43148 476 aaKnown RBP22.01■■□□□ 1.11
HIF3A-208ENST00000524533 ZNF526Q8TF50 670 aaPredicted RBP22.01■■□□□ 1.11
HIF3A-208ENST00000524533 UBR2Q8IWV8 1755 aa22■■□□□ 1.11
HIF3A-208ENST00000524533 A0A0G2JLW4 131 aa22■■□□□ 1.11
HIF3A-208ENST00000524533 SRP68Q9UHB9 627 aaKnown RBP22■■□□□ 1.11
HIF3A-208ENST00000524533 BCS1LQ9Y276 419 aa22■■□□□ 1.11
HIF3A-208ENST00000524533 NPC1L1Q9UHC9 1359 aa21.99■■□□□ 1.11
HIF3A-208ENST00000524533 MTHFSDQ2M296 383 aaKnown RBP21.99■■□□□ 1.11
HIF3A-208ENST00000524533 DNAJC10Q8IXB1 793 aa21.99■■□□□ 1.11
HIF3A-208ENST00000524533 INTS5Q6P9B9 1019 aaKnown RBP21.98■■□□□ 1.11
HIF3A-208ENST00000524533 ARFGEF1Q9Y6D6 1849 aa21.97■■□□□ 1.11
HIF3A-208ENST00000524533 DPEP1P16444 411 aa21.97■■□□□ 1.11
HIF3A-208ENST00000524533 SLC39A6Q13433 755 aa21.97■■□□□ 1.11
HIF3A-208ENST00000524533 CNGB1Q14028 1251 aaPredicted RBP21.97■■□□□ 1.11
HIF3A-208ENST00000524533 FKBP8Q14318 412 aa21.97■■□□□ 1.11
HIF3A-208ENST00000524533 DDR1Q08345 913 aa21.95■■□□□ 1.1
HIF3A-208ENST00000524533 SOS1Q07889 1333 aaPredicted RBP21.95■■□□□ 1.1
HIF3A-208ENST00000524533 U2SURPO15042 1029 aaKnown RBP21.94■■□□□ 1.1
HIF3A-208ENST00000524533 FCHSD2O94868 740 aa21.94■■□□□ 1.1
HIF3A-208ENST00000524533 CYP19A1P11511 503 aaPredicted RBP21.94■■□□□ 1.1
HIF3A-208ENST00000524533 COL15A1P39059 1388 aa21.94■■□□□ 1.1
HIF3A-208ENST00000524533 SIPA1L3O60292 1781 aaPredicted RBP21.93■■□□□ 1.1
HIF3A-208ENST00000524533 ZPR1O75312 459 aa21.93■■□□□ 1.1
HIF3A-208ENST00000524533 USPL1Q5W0Q7 1092 aa21.92■■□□□ 1.1
HIF3A-208ENST00000524533 ARHGAP27Q6ZUM4 889 aa21.92■■□□□ 1.1
HIF3A-208ENST00000524533 POLRMTO00411 1230 aaKnown RBP21.91■■□□□ 1.1
HIF3A-208ENST00000524533 VSIG10Q8N0Z9 540 aa21.91■■□□□ 1.1
HIF3A-208ENST00000524533 ZBTB1Q9Y2K1 713 aa21.91■■□□□ 1.1
HIF3A-208ENST00000524533 AFDNP55196 1824 aaKnown RBP21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms