RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 CLN3Q13286 438 aa10.82□□□□□ -0.68
CPNE3-201ENST00000517354 ELOAQ14241 798 aaKnown RBP10.82□□□□□ -0.68
CPNE3-201ENST00000517354 SLC27A3Q5K4L6 730 aa10.82□□□□□ -0.68
CPNE3-201ENST00000517354 INSM2Q96T92 566 aaPredicted RBP10.82□□□□□ -0.68
CPNE3-201ENST00000517354 ETNK1Q9HBU6 452 aa10.82□□□□□ -0.68
CPNE3-201ENST00000517354 KDF1Q8NAX2 398 aaPredicted RBP10.81□□□□□ -0.68
CPNE3-201ENST00000517354 ATP13A2Q9NQ11 1180 aa10.81□□□□□ -0.68
CPNE3-201ENST00000517354 ZNF358Q9NW07 568 aa10.81□□□□□ -0.68
CPNE3-201ENST00000517354 SPINT1O43278 529 aa10.8□□□□□ -0.68
CPNE3-201ENST00000517354 SCNN1DP51172 638 aa10.8□□□□□ -0.68
CPNE3-201ENST00000517354 CENPCQ03188 943 aa10.8□□□□□ -0.68
CPNE3-201ENST00000517354 ZFP42Q96MM3 310 aa10.8□□□□□ -0.68
CPNE3-201ENST00000517354 TMEM229AB2RXF0 380 aa10.79□□□□□ -0.68
CPNE3-201ENST00000517354 IL2RAP01589 272 aa10.79□□□□□ -0.68
CPNE3-201ENST00000517354 TLR1Q15399 786 aa10.79□□□□□ -0.68
CPNE3-201ENST00000517354 TMEM214Q6NUQ4 689 aaKnown RBP10.79□□□□□ -0.68
CPNE3-201ENST00000517354 TRIM46Q7Z4K8 759 aa10.79□□□□□ -0.68
CPNE3-201ENST00000517354 SENP2Q9HC62 589 aa10.79□□□□□ -0.68
CPNE3-201ENST00000517354 WASLO00401 505 aaPredicted RBP10.78□□□□□ -0.68
CPNE3-201ENST00000517354 SMTNP53814 917 aa10.78□□□□□ -0.68
CPNE3-201ENST00000517354 ZSCAN10Q96SZ4 725 aaPredicted RBP10.78□□□□□ -0.68
CPNE3-201ENST00000517354 FIGNL2A6NMB9 653 aa10.77□□□□□ -0.69
CPNE3-201ENST00000517354 TTLL8A6PVC2 850 aa10.77□□□□□ -0.69
CPNE3-201ENST00000517354 M0R2N6 131 aa10.77□□□□□ -0.69
CPNE3-201ENST00000517354 GPC1P35052 558 aa10.77□□□□□ -0.69
CPNE3-201ENST00000517354 CTSOP43234 321 aaPredicted RBP10.77□□□□□ -0.69
CPNE3-201ENST00000517354 SLC4A9Q96Q91 983 aa10.77□□□□□ -0.69
CPNE3-201ENST00000517354 DACH1Q9UI36 760 aa10.77□□□□□ -0.69
CPNE3-201ENST00000517354 RNF144AP50876 292 aaPredicted RBP10.76□□□□□ -0.69
CPNE3-201ENST00000517354 TNS4Q8IZW8 715 aa10.76□□□□□ -0.69
CPNE3-201ENST00000517354 TSEN2Q8NCE0 465 aaKnown RBP10.76□□□□□ -0.69
CPNE3-201ENST00000517354 STK32AQ8WU08 396 aa10.76□□□□□ -0.69
CPNE3-201ENST00000517354 A6NJY4 79 aa10.75□□□□□ -0.69
CPNE3-201ENST00000517354 MAN1A2O60476 641 aa10.75□□□□□ -0.69
CPNE3-201ENST00000517354 GNASQ5JWF2 1037 aa10.75□□□□□ -0.69
CPNE3-201ENST00000517354 TMEM164Q5U3C3 297 aa10.75□□□□□ -0.69
CPNE3-201ENST00000517354 KIFC2Q96AC6 838 aa10.75□□□□□ -0.69
CPNE3-201ENST00000517354 ZMIZ1Q9ULJ6 1067 aa10.75□□□□□ -0.69
CPNE3-201ENST00000517354 CDK2AP1O14519 115 aa10.74□□□□□ -0.69
CPNE3-201ENST00000517354 DKK1O94907 266 aa10.74□□□□□ -0.69
CPNE3-201ENST00000517354 PRICKLE2Q7Z3G6 844 aa10.74□□□□□ -0.69
CPNE3-201ENST00000517354 RETREG2Q8NC44 543 aa10.74□□□□□ -0.69
CPNE3-201ENST00000517354 CHMP3Q9Y3E7 222 aa10.74□□□□□ -0.69
CPNE3-201ENST00000517354 SWI5Q1ZZU3 235 aa10.73□□□□□ -0.69
CPNE3-201ENST00000517354 LYSMD3Q7Z3D4 306 aa10.73□□□□□ -0.69
CPNE3-201ENST00000517354 NBPF15Q8N660 670 aa10.73□□□□□ -0.69
CPNE3-201ENST00000517354 LGR5O75473 907 aa10.72□□□□□ -0.69
CPNE3-201ENST00000517354 GRIP2Q9C0E4 1043 aa10.72□□□□□ -0.69
CPNE3-201ENST00000517354 USTQ9Y2C2 406 aa10.72□□□□□ -0.69
CPNE3-201ENST00000517354 SOS2Q07890 1332 aaPredicted RBP10.72□□□□□ -0.69
CPNE3-201ENST00000517354 CHMP7Q8WUX9 453 aaPredicted RBP10.71□□□□□ -0.69
CPNE3-201ENST00000517354 NIFKQ9BYG3 293 aaKnown RBP10.71□□□□□ -0.69
CPNE3-201ENST00000517354 CABP1Q9NZU7 370 aa10.71□□□□□ -0.69
CPNE3-201ENST00000517354 GMPR2Q9P2T1 348 aaKnown RBP10.71□□□□□ -0.69
CPNE3-201ENST00000517354 HRH3Q9Y5N1 445 aa10.71□□□□□ -0.69
CPNE3-201ENST00000517354 C11orf95C9JLR9 678 aaPredicted RBP10.7□□□□□ -0.7
CPNE3-201ENST00000517354 PDIA4P13667 645 aaKnown RBP10.7□□□□□ -0.7
CPNE3-201ENST00000517354 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.7□□□□□ -0.7
CPNE3-201ENST00000517354 PPARGC1BQ86YN6 1023 aaKnown RBP10.7□□□□□ -0.7
CPNE3-201ENST00000517354 SCG3Q8WXD2 468 aaKnown RBP10.7□□□□□ -0.7
CPNE3-201ENST00000517354 VTI1AQ96AJ9 217 aa10.7□□□□□ -0.7
CPNE3-201ENST00000517354 SCHIP1Q9P0W5 487 aaPredicted RBP10.7□□□□□ -0.7
CPNE3-201ENST00000517354 ATAD2Q6PL18 1390 aa10.69□□□□□ -0.7
CPNE3-201ENST00000517354 PRMT3O60678 531 aa10.69□□□□□ -0.7
CPNE3-201ENST00000517354 POU4F2Q12837 409 aa10.69□□□□□ -0.7
CPNE3-201ENST00000517354 MTFR1Q15390 333 aa10.69□□□□□ -0.7
CPNE3-201ENST00000517354 FOXD4L5Q5VV16 416 aaPredicted RBP10.69□□□□□ -0.7
CPNE3-201ENST00000517354 SLC9A9Q8IVB4 645 aa10.69□□□□□ -0.7
CPNE3-201ENST00000517354 RNF217Q8TC41 542 aa10.69□□□□□ -0.7
CPNE3-201ENST00000517354 PRIMPOLQ96LW4 560 aa10.69□□□□□ -0.7
CPNE3-201ENST00000517354 FHDC1Q9C0D6 1143 aaPredicted RBP10.69□□□□□ -0.7
CPNE3-201ENST00000517354 PPP1R12BO60237 982 aaPredicted RBP10.68□□□□□ -0.7
CPNE3-201ENST00000517354 TBCELQ5QJ74 424 aa10.68□□□□□ -0.7
CPNE3-201ENST00000517354 TAS1R3Q7RTX0 852 aa10.68□□□□□ -0.7
CPNE3-201ENST00000517354 GAS2L2Q8NHY3 880 aa10.68□□□□□ -0.7
CPNE3-201ENST00000517354 RHBDD1Q8TEB9 315 aa10.68□□□□□ -0.7
CPNE3-201ENST00000517354 TSPAN10Q9H1Z9 355 aaPredicted RBP10.68□□□□□ -0.7
CPNE3-201ENST00000517354 ZNF232Q9UNY5 417 aa10.68□□□□□ -0.7
CPNE3-201ENST00000517354 RHOQP17081 205 aa10.67□□□□□ -0.7
CPNE3-201ENST00000517354 PHKA2P46019 1235 aa10.67□□□□□ -0.7
CPNE3-201ENST00000517354 CLP1Q92989 425 aaKnown RBP10.67□□□□□ -0.7
CPNE3-201ENST00000517354 AIDAQ96BJ3 306 aa10.67□□□□□ -0.7
CPNE3-201ENST00000517354 TRIM47Q96LD4 638 aa10.67□□□□□ -0.7
CPNE3-201ENST00000517354 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.67□□□□□ -0.7
CPNE3-201ENST00000517354 CARNS1A5YM72 827 aa10.66□□□□□ -0.7
CPNE3-201ENST00000517354 B4GALNT3Q6L9W6 998 aa10.66□□□□□ -0.7
CPNE3-201ENST00000517354 SERTM1A2A2V5 107 aa10.65□□□□□ -0.7
CPNE3-201ENST00000517354 TMEM88BA6NKF7 163 aa10.65□□□□□ -0.7
CPNE3-201ENST00000517354 ATP2B4P23634 1241 aa10.65□□□□□ -0.7
CPNE3-201ENST00000517354 PSMA6P60900 246 aaKnown RBP10.65□□□□□ -0.7
CPNE3-201ENST00000517354 FAM69CQ0P6D2 419 aa10.65□□□□□ -0.7
CPNE3-201ENST00000517354 NBPF10Q6P3W6 841 aaKnown RBP10.65□□□□□ -0.7
CPNE3-201ENST00000517354 TIMMDC1Q9NPL8 285 aa10.65□□□□□ -0.7
CPNE3-201ENST00000517354 PODXL2Q9NZ53 605 aa10.65□□□□□ -0.7
CPNE3-201ENST00000517354 DNMT3LQ9UJW3 386 aa10.65□□□□□ -0.7
CPNE3-201ENST00000517354 SOBPA7XYQ1 873 aa10.64□□□□□ -0.71
CPNE3-201ENST00000517354 IGFBP4P22692 258 aa10.64□□□□□ -0.71
CPNE3-201ENST00000517354 EPHA4P54764 986 aa10.64□□□□□ -0.71
CPNE3-201ENST00000517354 WDR44Q5JSH3 913 aa10.64□□□□□ -0.71
CPNE3-201ENST00000517354 SPATA31C2B4DYI2 1134 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms