RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 SLC51AQ86UW1 340 aa2.44□□□□□ -2.02
RNU6-539P-201ENST00000516665 KSR1Q8IVT5 923 aa2.44□□□□□ -2.02
RNU6-539P-201ENST00000516665 GPAMQ9HCL2 828 aa2.44□□□□□ -2.02
RNU6-539P-201ENST00000516665 USP21Q9UK80 565 aa2.44□□□□□ -2.02
RNU6-539P-201ENST00000516665 ADH1AP07327 375 aa2.43□□□□□ -2.02
RNU6-539P-201ENST00000516665 ZSCAN22P10073 491 aaPredicted RBP2.43□□□□□ -2.02
RNU6-539P-201ENST00000516665 CHGAP10645 457 aaKnown RBP2.43□□□□□ -2.02
RNU6-539P-201ENST00000516665 C8orf86Q6ZUL3 223 aa2.43□□□□□ -2.02
RNU6-539P-201ENST00000516665 BPHLQ86WA6 291 aaPredicted RBP2.43□□□□□ -2.02
RNU6-539P-201ENST00000516665 MEGF10Q96KG7 1140 aa2.43□□□□□ -2.02
RNU6-539P-201ENST00000516665 C20orf173Q96LM9 149 aa2.43□□□□□ -2.02
RNU6-539P-201ENST00000516665 DNAJC5Q9H3Z4 198 aa2.43□□□□□ -2.02
RNU6-539P-201ENST00000516665 HOXA2O43364 376 aa2.42□□□□□ -2.02
RNU6-539P-201ENST00000516665 GTPBP6O43824 516 aaPredicted RBP2.42□□□□□ -2.02
RNU6-539P-201ENST00000516665 BNIP3LO60238 219 aa2.42□□□□□ -2.02
RNU6-539P-201ENST00000516665 NID1P14543 1247 aa2.42□□□□□ -2.02
RNU6-539P-201ENST00000516665 CTHP32929 405 aa2.42□□□□□ -2.02
RNU6-539P-201ENST00000516665 TMEM132AQ24JP5 1023 aa2.42□□□□□ -2.02
RNU6-539P-201ENST00000516665 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
RNU6-539P-201ENST00000516665 TRMT44Q8IYL2 757 aaKnown RBP2.42□□□□□ -2.02
RNU6-539P-201ENST00000516665 CRELD1Q96HD1 420 aa2.42□□□□□ -2.02
RNU6-539P-201ENST00000516665 M0R082 166 aa2.41□□□□□ -2.02
RNU6-539P-201ENST00000516665 PAPLNO95428 1278 aa2.41□□□□□ -2.02
RNU6-539P-201ENST00000516665 IREB2P48200 963 aaKnown RBP2.41□□□□□ -2.02
RNU6-539P-201ENST00000516665 COL19A1Q14993 1142 aa2.41□□□□□ -2.02
RNU6-539P-201ENST00000516665 NBPF14Q5TI25 921 aa2.41□□□□□ -2.02
RNU6-539P-201ENST00000516665 NBPF10Q6P3W6 841 aaKnown RBP2.41□□□□□ -2.02
RNU6-539P-201ENST00000516665 LRRC56Q8IYG6 542 aaPredicted RBP2.41□□□□□ -2.02
RNU6-539P-201ENST00000516665 NBPF15Q8N660 670 aa2.41□□□□□ -2.02
RNU6-539P-201ENST00000516665 ZNF417Q8TAU3 575 aa2.41□□□□□ -2.02
RNU6-539P-201ENST00000516665 TOX2Q96NM4 488 aa2.41□□□□□ -2.02
RNU6-539P-201ENST00000516665 ZNF587Q96SQ5 575 aaPredicted RBP2.41□□□□□ -2.02
RNU6-539P-201ENST00000516665 NDFIP2Q9NV92 336 aa2.41□□□□□ -2.02
RNU6-539P-201ENST00000516665 A0A0A0MRY4 1105 aa2.4□□□□□ -2.03
RNU6-539P-201ENST00000516665 GRIK1P39086 918 aa2.4□□□□□ -2.03
RNU6-539P-201ENST00000516665 PKD2Q13563 968 aa2.4□□□□□ -2.03
RNU6-539P-201ENST00000516665 KRTAP5-4Q6L8H1 288 aa2.4□□□□□ -2.03
RNU6-539P-201ENST00000516665 INTS5Q6P9B9 1019 aaKnown RBP2.4□□□□□ -2.03
RNU6-539P-201ENST00000516665 SIAH1Q8IUQ4 282 aa2.4□□□□□ -2.03
RNU6-539P-201ENST00000516665 ZSCAN18Q8TBC5 510 aaPredicted RBP2.4□□□□□ -2.03
RNU6-539P-201ENST00000516665 WFDC12Q8WWY7 111 aa2.4□□□□□ -2.03
RNU6-539P-201ENST00000516665 RELTQ969Z4 430 aa2.4□□□□□ -2.03
RNU6-539P-201ENST00000516665 KRTAP4-4Q9BYR3 166 aa2.4□□□□□ -2.03
RNU6-539P-201ENST00000516665 TIMMDC1Q9NPL8 285 aa2.4□□□□□ -2.03
RNU6-539P-201ENST00000516665 MEGF11A6BM72 1044 aa2.39□□□□□ -2.03
RNU6-539P-201ENST00000516665 IGLV1-40P01703 118 aa2.39□□□□□ -2.03
RNU6-539P-201ENST00000516665 NOS3P29474 1203 aa2.39□□□□□ -2.03
RNU6-539P-201ENST00000516665 ADD1P35611 737 aaKnown RBP2.39□□□□□ -2.03
RNU6-539P-201ENST00000516665 PCBP4P57723 403 aaKnown RBP2.39□□□□□ -2.03
RNU6-539P-201ENST00000516665 KRTAP10-7P60409 375 aaPredicted RBP2.39□□□□□ -2.03
RNU6-539P-201ENST00000516665 NFKB2Q00653 900 aa2.39□□□□□ -2.03
RNU6-539P-201ENST00000516665 TRAPPC3LQ5T215 181 aa2.39□□□□□ -2.03
RNU6-539P-201ENST00000516665 FAM53CQ9NYF3 392 aa2.39□□□□□ -2.03
RNU6-539P-201ENST00000516665 MAP10Q9P2G4 905 aa2.39□□□□□ -2.03
RNU6-539P-201ENST00000516665 CARMIL2Q6F5E8 1435 aa2.39□□□□□ -2.03
RNU6-539P-201ENST00000516665 ATP5J2-PTCD1G3V325 749 aa2.38□□□□□ -2.03
RNU6-539P-201ENST00000516665 PTCD1O75127 700 aaKnown RBP2.38□□□□□ -2.03
RNU6-539P-201ENST00000516665 ALBP02768 609 aa2.38□□□□□ -2.03
RNU6-539P-201ENST00000516665 KRTAP10-9P60411 292 aa2.38□□□□□ -2.03
RNU6-539P-201ENST00000516665 TMPRSS4Q9NRS4 437 aa2.38□□□□□ -2.03
RNU6-539P-201ENST00000516665 HCN2Q9UL51 889 aa2.38□□□□□ -2.03
RNU6-539P-201ENST00000516665 MAGEB6P1A0A0J9YX57 407 aa2.37□□□□□ -2.03
RNU6-539P-201ENST00000516665 C6orf229H3BNL8 230 aa2.37□□□□□ -2.03
RNU6-539P-201ENST00000516665 CD46P15529 392 aa2.37□□□□□ -2.03
RNU6-539P-201ENST00000516665 HOXA5P20719 270 aa2.37□□□□□ -2.03
RNU6-539P-201ENST00000516665 TGM1P22735 817 aa2.37□□□□□ -2.03
RNU6-539P-201ENST00000516665 GRNP28799 593 aaKnown RBP2.37□□□□□ -2.03
RNU6-539P-201ENST00000516665 SLC38A3Q99624 504 aa2.37□□□□□ -2.03
RNU6-539P-201ENST00000516665 RUBCNLQ9H714 662 aa2.37□□□□□ -2.03
RNU6-539P-201ENST00000516665 PRDM6Q9NQX0 595 aa2.37□□□□□ -2.03
RNU6-539P-201ENST00000516665 ARIH1Q9Y4X5 557 aaPredicted RBP2.37□□□□□ -2.03
RNU6-539P-201ENST00000516665 ELOA3CA0A087WX78 387 aaPredicted RBP2.36□□□□□ -2.03
RNU6-539P-201ENST00000516665 ELOA3DA6NLF2 546 aaPredicted RBP2.36□□□□□ -2.03
RNU6-539P-201ENST00000516665 USP46P62068 366 aa2.36□□□□□ -2.03
RNU6-539P-201ENST00000516665 DHX9Q08211 1270 aaKnown RBP2.36□□□□□ -2.03
RNU6-539P-201ENST00000516665 HNRNPA0Q13151 305 aaKnown RBP2.36□□□□□ -2.03
RNU6-539P-201ENST00000516665 ELOA3BQ3SY89 546 aa2.36□□□□□ -2.03
RNU6-539P-201ENST00000516665 ZNF784Q8NCA9 323 aaPredicted RBP2.36□□□□□ -2.03
RNU6-539P-201ENST00000516665 ELOA3Q8NG57 546 aa2.36□□□□□ -2.03
RNU6-539P-201ENST00000516665 PHOX2BQ99453 314 aa2.36□□□□□ -2.03
RNU6-539P-201ENST00000516665 NUTM2FA1L443 756 aa2.35□□□□□ -2.03
RNU6-539P-201ENST00000516665 PRR19A6NJB7 356 aa2.35□□□□□ -2.03
RNU6-539P-201ENST00000516665 AKAP8O43823 692 aaKnown RBP2.35□□□□□ -2.03
RNU6-539P-201ENST00000516665 FOXD2O60548 495 aaPredicted RBP2.35□□□□□ -2.03
RNU6-539P-201ENST00000516665 LILRA1O75019 489 aa2.35□□□□□ -2.03
RNU6-539P-201ENST00000516665 INTS6LQ5JSJ4 861 aaKnown RBP2.35□□□□□ -2.03
RNU6-539P-201ENST00000516665 NFXL1Q6ZNB6 911 aa2.35□□□□□ -2.03
RNU6-539P-201ENST00000516665 KCTD15Q96SI1 283 aaPredicted RBP2.35□□□□□ -2.03
RNU6-539P-201ENST00000516665 STARD13Q9Y3M8 1113 aa2.35□□□□□ -2.03
RNU6-539P-201ENST00000516665 MEN1O00255 615 aa2.34□□□□□ -2.03
RNU6-539P-201ENST00000516665 GPC1P35052 558 aa2.34□□□□□ -2.03
RNU6-539P-201ENST00000516665 MESP2Q0VG99 397 aa2.34□□□□□ -2.03
RNU6-539P-201ENST00000516665 SLC27A3Q5K4L6 730 aa2.34□□□□□ -2.03
RNU6-539P-201ENST00000516665 NAF1Q96HR8 494 aaKnown RBP2.34□□□□□ -2.03
RNU6-539P-201ENST00000516665 MDFIQ99750 246 aa2.34□□□□□ -2.03
RNU6-539P-201ENST00000516665 CARD14Q9BXL6 1004 aa2.34□□□□□ -2.03
RNU6-539P-201ENST00000516665 PCDHGC3Q9UN70 934 aa2.34□□□□□ -2.03
RNU6-539P-201ENST00000516665 WASLO00401 505 aaPredicted RBP2.33□□□□□ -2.04
RNU6-539P-201ENST00000516665 GSC2O15499 205 aa2.33□□□□□ -2.04
RNU6-539P-201ENST00000516665 CD33P20138 364 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms