RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 NSD3Q9BZ95 1437 aa15.7■□□□□ 0.1
LIMCH1-221ENST00000515785 ATP6V1AP38606 617 aa15.7■□□□□ 0.1
LIMCH1-221ENST00000515785 FSTL1Q12841 308 aa15.7■□□□□ 0.1
LIMCH1-221ENST00000515785 ITPK1Q13572 414 aa15.7■□□□□ 0.1
LIMCH1-221ENST00000515785 HSP90AB2PQ58FF8 381 aa15.7■□□□□ 0.1
LIMCH1-221ENST00000515785 RNF216Q9NWF9 866 aaPredicted RBP15.7■□□□□ 0.1
LIMCH1-221ENST00000515785 KIAA1551Q9HCM1 1747 aa15.7■□□□□ 0.1
LIMCH1-221ENST00000515785 ASAP1Q9ULH1 1129 aa15.69■□□□□ 0.1
LIMCH1-221ENST00000515785 SMG6Q86US8 1419 aaKnown RBP15.68■□□□□ 0.1
LIMCH1-221ENST00000515785 TMF1P82094 1093 aa15.68■□□□□ 0.1
LIMCH1-221ENST00000515785 GGNBP2Q9H3C7 697 aa15.68■□□□□ 0.1
LIMCH1-221ENST00000515785 MAP2P11137 1827 aaKnown RBP15.68■□□□□ 0.1
LIMCH1-221ENST00000515785 KIF13BQ9NQT8 1826 aa15.68■□□□□ 0.1
LIMCH1-221ENST00000515785 TRAPPC3LQ5T215 181 aa15.67■□□□□ 0.1
LIMCH1-221ENST00000515785 KCPQ6ZWJ8 1503 aa15.67■□□□□ 0.1
LIMCH1-221ENST00000515785 KDM2BQ8NHM5 1336 aa15.67■□□□□ 0.1
LIMCH1-221ENST00000515785 RTL1A6NKG5 1358 aa15.66■□□□□ 0.1
LIMCH1-221ENST00000515785 NLGN1Q8N2Q7 840 aa15.66■□□□□ 0.1
LIMCH1-221ENST00000515785 CCDC87Q9NVE4 849 aa15.66■□□□□ 0.1
LIMCH1-221ENST00000515785 TMOD3Q9NYL9 352 aa15.66■□□□□ 0.1
LIMCH1-221ENST00000515785 RNF181Q9P0P0 153 aa15.66■□□□□ 0.1
LIMCH1-221ENST00000515785 FYB1O15117 783 aa15.65■□□□□ 0.1
LIMCH1-221ENST00000515785 PARP3Q9Y6F1 533 aa15.65■□□□□ 0.1
LIMCH1-221ENST00000515785 HSPA1AP0DMV8 641 aaKnown RBP15.64■□□□□ 0.09
LIMCH1-221ENST00000515785 HSPA1BP0DMV9 641 aaKnown RBP15.64■□□□□ 0.09
LIMCH1-221ENST00000515785 KCNA3P22001 575 aa15.64■□□□□ 0.09
LIMCH1-221ENST00000515785 ARHGEF1Q92888 912 aaKnown RBP15.64■□□□□ 0.09
LIMCH1-221ENST00000515785 PUS7Q96PZ0 661 aaKnown RBP15.64■□□□□ 0.09
LIMCH1-221ENST00000515785 RTCBQ9Y3I0 505 aaKnown RBP15.64■□□□□ 0.09
LIMCH1-221ENST00000515785 C10orf71Q711Q0 1435 aa15.63■□□□□ 0.09
LIMCH1-221ENST00000515785 NKX1-1Q15270 411 aaPredicted RBP15.63■□□□□ 0.09
LIMCH1-221ENST00000515785 SMC1BQ8NDV3 1235 aa15.63■□□□□ 0.09
LIMCH1-221ENST00000515785 ATG3Q9NT62 314 aa15.63■□□□□ 0.09
LIMCH1-221ENST00000515785 PIM2Q9P1W9 311 aa15.63■□□□□ 0.09
LIMCH1-221ENST00000515785 SPG7Q9UQ90 795 aa15.63■□□□□ 0.09
LIMCH1-221ENST00000515785 INSRP06213 1382 aa15.62■□□□□ 0.09
LIMCH1-221ENST00000515785 DALRD3Q5D0E6 543 aaKnown RBP15.62■□□□□ 0.09
LIMCH1-221ENST00000515785 RBM42Q9BTD8 480 aaKnown RBP15.62■□□□□ 0.09
LIMCH1-221ENST00000515785 BRCA1P38398 1863 aaKnown RBP15.62■□□□□ 0.09
LIMCH1-221ENST00000515785 PKD1L3Q7Z443 1732 aa15.62■□□□□ 0.09
LIMCH1-221ENST00000515785 PLEKHG2Q9H7P9 1386 aa15.62■□□□□ 0.09
LIMCH1-221ENST00000515785 PPM1GO15355 546 aaPredicted RBP15.61■□□□□ 0.09
LIMCH1-221ENST00000515785 GYS1P13807 737 aa15.61■□□□□ 0.09
LIMCH1-221ENST00000515785 RFC4P35249 363 aa15.61■□□□□ 0.09
LIMCH1-221ENST00000515785 ARFGEF1Q9Y6D6 1849 aa15.61■□□□□ 0.09
LIMCH1-221ENST00000515785 C4AP0C0L4 1744 aa15.6■□□□□ 0.09
LIMCH1-221ENST00000515785 ST20-MTHFSA0A0A6YYL1 179 aa15.59■□□□□ 0.09
LIMCH1-221ENST00000515785 CHRNA5P30532 468 aa15.59■□□□□ 0.09
LIMCH1-221ENST00000515785 CNKSR2Q8WXI2 1034 aa15.59■□□□□ 0.09
LIMCH1-221ENST00000515785 DCAF5Q96JK2 942 aa15.59■□□□□ 0.09
LIMCH1-221ENST00000515785 SLC4A9Q96Q91 983 aa15.59■□□□□ 0.09
LIMCH1-221ENST00000515785 EMILIN1Q9Y6C2 1016 aa15.59■□□□□ 0.09
LIMCH1-221ENST00000515785 FLT4P35916 1363 aa15.59■□□□□ 0.09
LIMCH1-221ENST00000515785 SBF1O95248 1867 aa15.59■□□□□ 0.09
LIMCH1-221ENST00000515785 PCNTO95613 3336 aa15.57■□□□□ 0.08
LIMCH1-221ENST00000515785 PHKG2P15735 406 aa15.57■□□□□ 0.08
LIMCH1-221ENST00000515785 IFNL2Q8IZJ0 200 aa15.57■□□□□ 0.08
LIMCH1-221ENST00000515785 TESK2Q96S53 571 aa15.57■□□□□ 0.08
LIMCH1-221ENST00000515785 TNRC6CQ9HCJ0 1690 aaKnown RBP15.57■□□□□ 0.08
LIMCH1-221ENST00000515785 RPS6KA4O75676 772 aa15.56■□□□□ 0.08
LIMCH1-221ENST00000515785 SRP68Q9UHB9 627 aaKnown RBP15.56■□□□□ 0.08
LIMCH1-221ENST00000515785 RASSF7Q02833 373 aa15.55■□□□□ 0.08
LIMCH1-221ENST00000515785 RC3H1Q5TC82 1133 aaKnown RBP15.55■□□□□ 0.08
LIMCH1-221ENST00000515785 EYA1Q99502 592 aa15.55■□□□□ 0.08
LIMCH1-221ENST00000515785 VEGFAP15692 232 aaPredicted RBP15.54■□□□□ 0.08
LIMCH1-221ENST00000515785 DDR1Q08345 913 aa15.54■□□□□ 0.08
LIMCH1-221ENST00000515785 FKBP8Q14318 412 aa15.54■□□□□ 0.08
LIMCH1-221ENST00000515785 KIF20BQ96Q89 1820 aa15.52■□□□□ 0.08
LIMCH1-221ENST00000515785 KDRP35968 1356 aa15.52■□□□□ 0.08
LIMCH1-221ENST00000515785 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.52■□□□□ 0.08
LIMCH1-221ENST00000515785 MYH14Q7Z406 1995 aaKnown RBP15.52■□□□□ 0.07
LIMCH1-221ENST00000515785 KIF24Q5T7B8 1368 aa15.51■□□□□ 0.07
LIMCH1-221ENST00000515785 CNTNAP4Q9C0A0 1308 aa15.51■□□□□ 0.07
LIMCH1-221ENST00000515785 CCDC88AQ3V6T2 1871 aa15.51■□□□□ 0.07
LIMCH1-221ENST00000515785 GLTPD2A6NH11 291 aa15.51■□□□□ 0.07
LIMCH1-221ENST00000515785 PTCD1O75127 700 aaKnown RBP15.51■□□□□ 0.07
LIMCH1-221ENST00000515785 MKRN1Q9UHC7 482 aaKnown RBP15.51■□□□□ 0.07
LIMCH1-221ENST00000515785 KCNA4P22459 653 aa15.5■□□□□ 0.07
LIMCH1-221ENST00000515785 COL5A3P25940 1745 aaPredicted RBP15.5■□□□□ 0.07
LIMCH1-221ENST00000515785 LMNB1P20700 586 aa15.49■□□□□ 0.07
LIMCH1-221ENST00000515785 TONSLQ96HA7 1378 aa15.49■□□□□ 0.07
LIMCH1-221ENST00000515785 ERVV-2B6SEH9 535 aa15.48■□□□□ 0.07
LIMCH1-221ENST00000515785 CRKLP46109 303 aaKnown RBP15.48■□□□□ 0.07
LIMCH1-221ENST00000515785 CABP4P57796 275 aa15.48■□□□□ 0.07
LIMCH1-221ENST00000515785 NCAPD2Q15021 1401 aa15.48■□□□□ 0.07
LIMCH1-221ENST00000515785 WASHC2AQ641Q2 1341 aa15.47■□□□□ 0.07
LIMCH1-221ENST00000515785 POTECB2RU33 542 aa15.47■□□□□ 0.07
LIMCH1-221ENST00000515785 POLRMTO00411 1230 aaKnown RBP15.47■□□□□ 0.07
LIMCH1-221ENST00000515785 TM4SF1P30408 202 aa15.47■□□□□ 0.07
LIMCH1-221ENST00000515785 CARD14Q9BXL6 1004 aa15.47■□□□□ 0.07
LIMCH1-221ENST00000515785 USP42Q9H9J4 1324 aaKnown RBP15.46■□□□□ 0.07
LIMCH1-221ENST00000515785 FOXN1O15353 648 aa15.46■□□□□ 0.07
LIMCH1-221ENST00000515785 SLC24A1O60721 1099 aa15.46■□□□□ 0.07
LIMCH1-221ENST00000515785 SLC34A2O95436 690 aa15.46■□□□□ 0.07
LIMCH1-221ENST00000515785 ZNF831Q5JPB2 1677 aa15.45■□□□□ 0.06
LIMCH1-221ENST00000515785 USPL1Q5W0Q7 1092 aa15.45■□□□□ 0.06
LIMCH1-221ENST00000515785 ZC3H4Q9UPT8 1303 aaKnown RBP15.44■□□□□ 0.06
LIMCH1-221ENST00000515785 ZPR1O75312 459 aa15.44■□□□□ 0.06
LIMCH1-221ENST00000515785 TNNT2P45379 298 aaPredicted RBP15.44■□□□□ 0.06
LIMCH1-221ENST00000515785 ZNF219Q9P2Y4 722 aaPredicted RBP15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms