RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.44■□□□□ 0.54
TCOF1-215ENST00000515516 HMOX1P09601 288 aa18.44■□□□□ 0.54
TCOF1-215ENST00000515516 SSFA2P28290 1259 aa18.44■□□□□ 0.54
TCOF1-215ENST00000515516 GPR162Q16538 588 aa18.44■□□□□ 0.54
TCOF1-215ENST00000515516 GNPATO15228 680 aa18.43■□□□□ 0.54
TCOF1-215ENST00000515516 ITPK1Q13572 414 aa18.43■□□□□ 0.54
TCOF1-215ENST00000515516 AKAP4Q5JQC9 854 aa18.43■□□□□ 0.54
TCOF1-215ENST00000515516 QSER1Q2KHR3 1735 aa18.43■□□□□ 0.54
TCOF1-215ENST00000515516 PELP1Q8IZL8 1130 aaKnown RBP18.42■□□□□ 0.54
TCOF1-215ENST00000515516 NFATC2IPQ8NCF5 419 aa18.42■□□□□ 0.54
TCOF1-215ENST00000515516 U2SURPO15042 1029 aaKnown RBP18.41■□□□□ 0.54
TCOF1-215ENST00000515516 C5P01031 1676 aa18.41■□□□□ 0.54
TCOF1-215ENST00000515516 KDM6AO15550 1401 aaPredicted RBP18.4■□□□□ 0.54
TCOF1-215ENST00000515516 ITGB4P16144 1822 aa18.4■□□□□ 0.54
TCOF1-215ENST00000515516 CFAP53Q96M91 514 aa18.4■□□□□ 0.54
TCOF1-215ENST00000515516 RTCBQ9Y3I0 505 aaKnown RBP18.4■□□□□ 0.54
TCOF1-215ENST00000515516 PTCD1O75127 700 aaKnown RBP18.39■□□□□ 0.53
TCOF1-215ENST00000515516 TRAPPC3LQ5T215 181 aa18.39■□□□□ 0.53
TCOF1-215ENST00000515516 SMIM5Q71RC9 77 aa18.39■□□□□ 0.53
TCOF1-215ENST00000515516 C4BP0C0L5 1744 aa18.39■□□□□ 0.53
TCOF1-215ENST00000515516 RC3H1Q5TC82 1133 aaKnown RBP18.38■□□□□ 0.53
TCOF1-215ENST00000515516 AMIGO3Q86WK7 504 aa18.38■□□□□ 0.53
TCOF1-215ENST00000515516 NLGN2Q8NFZ4 835 aa18.38■□□□□ 0.53
TCOF1-215ENST00000515516 CD2APQ9Y5K6 639 aa18.37■□□□□ 0.53
TCOF1-215ENST00000515516 MTHFSDQ2M296 383 aaKnown RBP18.36■□□□□ 0.53
TCOF1-215ENST00000515516 SLC4A9Q96Q91 983 aa18.36■□□□□ 0.53
TCOF1-215ENST00000515516 TUBGCP6Q96RT7 1819 aa18.36■□□□□ 0.53
TCOF1-215ENST00000515516 SLC52A2Q9HAB3 445 aa18.36■□□□□ 0.53
TCOF1-215ENST00000515516 CNTNAP4Q9C0A0 1308 aa18.35■□□□□ 0.53
TCOF1-215ENST00000515516 RNMTO43148 476 aaKnown RBP18.35■□□□□ 0.53
TCOF1-215ENST00000515516 ADRA2BP18089 450 aa18.35■□□□□ 0.53
TCOF1-215ENST00000515516 LGR6Q9HBX8 967 aa18.35■□□□□ 0.53
TCOF1-215ENST00000515516 NUDCQ9Y266 331 aa18.35■□□□□ 0.53
TCOF1-215ENST00000515516 GRIN3BO60391 1043 aa18.34■□□□□ 0.53
TCOF1-215ENST00000515516 RPS6KA4O75676 772 aa18.34■□□□□ 0.53
TCOF1-215ENST00000515516 RFC4P35249 363 aa18.34■□□□□ 0.53
TCOF1-215ENST00000515516 NLGN1Q8N2Q7 840 aa18.33■□□□□ 0.52
TCOF1-215ENST00000515516 GAS2L2Q8NHY3 880 aa18.33■□□□□ 0.52
TCOF1-215ENST00000515516 ARHGEF1Q92888 912 aaKnown RBP18.32■□□□□ 0.52
TCOF1-215ENST00000515516 TAF1LQ8IZX4 1826 aa18.32■□□□□ 0.52
TCOF1-215ENST00000515516 CRKLP46109 303 aaKnown RBP18.31■□□□□ 0.52
TCOF1-215ENST00000515516 COL24A1Q17RW2 1714 aa18.31■□□□□ 0.52
TCOF1-215ENST00000515516 MMP10P09238 476 aa18.3■□□□□ 0.52
TCOF1-215ENST00000515516 PPP2R1AP30153 589 aa18.3■□□□□ 0.52
TCOF1-215ENST00000515516 GNAT3A8MTJ3 354 aa18.29■□□□□ 0.52
TCOF1-215ENST00000515516 TEFQ10587 303 aa18.29■□□□□ 0.52
TCOF1-215ENST00000515516 SLC39A6Q13433 755 aa18.29■□□□□ 0.52
TCOF1-215ENST00000515516 TTC5Q8N0Z6 440 aa18.29■□□□□ 0.52
TCOF1-215ENST00000515516 COL3A1P02461 1466 aaPredicted RBP18.28■□□□□ 0.52
TCOF1-215ENST00000515516 U2AF1L5P0DN76 240 aaPredicted RBP18.28■□□□□ 0.52
TCOF1-215ENST00000515516 U2AF1Q01081 240 aaKnown RBP eCLIP18.28■□□□□ 0.52
TCOF1-215ENST00000515516 YBX3P16989 372 aaKnown RBP eCLIP18.27■□□□□ 0.529e-6■□□□□ 10.4
TCOF1-215ENST00000515516 PRKAR2BP31323 418 aa18.27■□□□□ 0.52
TCOF1-215ENST00000515516 DNAJC10Q8IXB1 793 aa18.27■□□□□ 0.52
TCOF1-215ENST00000515516 ZNF784Q8NCA9 323 aaPredicted RBP18.27■□□□□ 0.52
TCOF1-215ENST00000515516 PARP3Q9Y6F1 533 aa18.27■□□□□ 0.52
TCOF1-215ENST00000515516 GYS1P13807 737 aa18.26■□□□□ 0.51
TCOF1-215ENST00000515516 CCDC87Q9NVE4 849 aa18.26■□□□□ 0.51
TCOF1-215ENST00000515516 UBR3Q6ZT12 1888 aa18.26■□□□□ 0.51
TCOF1-215ENST00000515516 INTS5Q6P9B9 1019 aaKnown RBP18.25■□□□□ 0.51
TCOF1-215ENST00000515516 VSIG10Q8N0Z9 540 aa18.25■□□□□ 0.51
TCOF1-215ENST00000515516 ZNF831Q5JPB2 1677 aa18.25■□□□□ 0.51
TCOF1-215ENST00000515516 ZPR1O75312 459 aa18.24■□□□□ 0.51
TCOF1-215ENST00000515516 IL17REQ8NFR9 667 aa18.24■□□□□ 0.51
TCOF1-215ENST00000515516 RSPH6AQ9H0K4 717 aa18.24■□□□□ 0.51
TCOF1-215ENST00000515516 MRC1P22897 1456 aa18.23■□□□□ 0.51
TCOF1-215ENST00000515516 FCHSD2O94868 740 aa18.23■□□□□ 0.51
TCOF1-215ENST00000515516 STARD3NLO95772 234 aa18.23■□□□□ 0.51
TCOF1-215ENST00000515516 CYP19A1P11511 503 aaPredicted RBP18.23■□□□□ 0.51
TCOF1-215ENST00000515516 RTF1Q92541 710 aaKnown RBP18.23■□□□□ 0.51
TCOF1-215ENST00000515516 PHACTR3Q96KR7 559 aa18.23■□□□□ 0.51
TCOF1-215ENST00000515516 NEFMP07197 916 aa18.22■□□□□ 0.51
TCOF1-215ENST00000515516 TGFB2P61812 414 aa18.22■□□□□ 0.51
TCOF1-215ENST00000515516 SRP68Q9UHB9 627 aaKnown RBP18.22■□□□□ 0.51
TCOF1-215ENST00000515516 USP42Q9H9J4 1324 aaKnown RBP18.22■□□□□ 0.51
TCOF1-215ENST00000515516 TEX13AQ9BXU3 409 aaPredicted RBP18.21■□□□□ 0.51
TCOF1-215ENST00000515516 WWC3Q9ULE0 1092 aa18.21■□□□□ 0.51
TCOF1-215ENST00000515516 SCN11AQ9UI33 1791 aa18.2■□□□□ 0.5
TCOF1-215ENST00000515516 ZNF790Q6PG37 636 aa18.2■□□□□ 0.5
TCOF1-215ENST00000515516 SOS1Q07889 1333 aaPredicted RBP18.2■□□□□ 0.5
TCOF1-215ENST00000515516 BTBD11A6QL63 1104 aa18.19■□□□□ 0.5
TCOF1-215ENST00000515516 FKBP8Q14318 412 aa18.19■□□□□ 0.5
TCOF1-215ENST00000515516 FMNL2Q96PY5 1086 aa18.19■□□□□ 0.5
TCOF1-215ENST00000515516 CANXP27824 592 aaKnown RBP18.18■□□□□ 0.5
TCOF1-215ENST00000515516 USPL1Q5W0Q7 1092 aa18.18■□□□□ 0.5
TCOF1-215ENST00000515516 ZNF496Q96IT1 587 aaPredicted RBP18.18■□□□□ 0.5
TCOF1-215ENST00000515516 ZBTB1Q9Y2K1 713 aa18.18■□□□□ 0.5
TCOF1-215ENST00000515516 A0A087WZG4 1122 aa18.17■□□□□ 0.5
TCOF1-215ENST00000515516 A0A0G2JLW4 131 aa18.17■□□□□ 0.5
TCOF1-215ENST00000515516 NPM2Q86SE8 214 aaKnown RBP18.17■□□□□ 0.5
TCOF1-215ENST00000515516 NARFQ9UHQ1 456 aa18.17■□□□□ 0.5
TCOF1-215ENST00000515516 COL5A3P25940 1745 aaPredicted RBP18.17■□□□□ 0.5
TCOF1-215ENST00000515516 PNNQ9H307 717 aaKnown RBP18.16■□□□□ 0.5
TCOF1-215ENST00000515516 KCPQ6ZWJ8 1503 aa18.16■□□□□ 0.5
TCOF1-215ENST00000515516 COL15A1P39059 1388 aa18.16■□□□□ 0.5
TCOF1-215ENST00000515516 CEMIPQ8WUJ3 1361 aa18.16■□□□□ 0.5
TCOF1-215ENST00000515516 CICQ96RK0 1608 aaPredicted RBP18.16■□□□□ 0.5
TCOF1-215ENST00000515516 HEG1Q9ULI3 1381 aa18.16■□□□□ 0.5
TCOF1-215ENST00000515516 UTRNP46939 3433 aa18.16■□□□□ 0.5
TCOF1-215ENST00000515516 HTATSF1O43719 755 aaKnown RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms