RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, humanhuman

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-223ENST00000515459 KIF13BQ9NQT8 1826 aa21.8■■□□□ 1.08
LMNA-223ENST00000515459 CICQ96RK0 1608 aaPredicted RBP21.79■■□□□ 1.08
LMNA-223ENST00000515459 PLEKHG2Q9H7P9 1386 aa21.78■■□□□ 1.08
LMNA-223ENST00000515459 MMP10P09238 476 aa21.78■■□□□ 1.08
LMNA-223ENST00000515459 ZNF831Q5JPB2 1677 aa21.77■■□□□ 1.08
LMNA-223ENST00000515459 RTCBQ9Y3I0 505 aaKnown RBP21.77■■□□□ 1.08
LMNA-223ENST00000515459 EIF4A2Q14240 407 aaKnown RBP21.76■■□□□ 1.07
LMNA-223ENST00000515459 TRAPPC3LQ5T215 181 aa21.76■■□□□ 1.07
LMNA-223ENST00000515459 KIAA1551Q9HCM1 1747 aa21.76■■□□□ 1.07
LMNA-223ENST00000515459 N4BP2Q86UW6 1770 aaPredicted RBP21.76■■□□□ 1.07
LMNA-223ENST00000515459 KDRP35968 1356 aa21.75■■□□□ 1.07
LMNA-223ENST00000515459 NLGN1Q8N2Q7 840 aa21.75■■□□□ 1.07
LMNA-223ENST00000515459 PXDNLA1KZ92 1463 aa21.75■■□□□ 1.07
LMNA-223ENST00000515459 ERVV-2B6SEH9 535 aa21.74■■□□□ 1.07
LMNA-223ENST00000515459 TGFB2P61812 414 aa21.74■■□□□ 1.07
LMNA-223ENST00000515459 COL5A3P25940 1745 aaPredicted RBP21.74■■□□□ 1.07
LMNA-223ENST00000515459 KIF3CO14782 793 aa21.73■■□□□ 1.07
LMNA-223ENST00000515459 TNNT2P45379 298 aaPredicted RBP21.73■■□□□ 1.07
LMNA-223ENST00000515459 RBM42Q9BTD8 480 aaKnown RBP21.73■■□□□ 1.07
LMNA-223ENST00000515459 HSP90AB1P08238 724 aaKnown RBP21.72■■□□□ 1.07
LMNA-223ENST00000515459 RC3H1Q5TC82 1133 aaKnown RBP21.72■■□□□ 1.07
LMNA-223ENST00000515459 DCAF5Q96JK2 942 aa21.72■■□□□ 1.07
LMNA-223ENST00000515459 SLC4A9Q96Q91 983 aa21.72■■□□□ 1.07
LMNA-223ENST00000515459 ADRA2BP18089 450 aa21.71■■□□□ 1.07
LMNA-223ENST00000515459 POLR3GLQ9BT43 218 aa21.71■■□□□ 1.07
LMNA-223ENST00000515459 BCS1LQ9Y276 419 aa21.71■■□□□ 1.07
LMNA-223ENST00000515459 C4AP0C0L4 1744 aa21.71■■□□□ 1.07
LMNA-223ENST00000515459 C10orf71Q711Q0 1435 aa21.71■■□□□ 1.07
LMNA-223ENST00000515459 A0A0G2JLW4 131 aa21.7■■□□□ 1.06
LMNA-223ENST00000515459 ARHGEF1Q92888 912 aaKnown RBP21.7■■□□□ 1.06
LMNA-223ENST00000515459 CCDC87Q9NVE4 849 aa21.7■■□□□ 1.06
LMNA-223ENST00000515459 TIMELESSQ9UNS1 1208 aa21.7■■□□□ 1.06
LMNA-223ENST00000515459 RFC4P35249 363 aa21.69■■□□□ 1.06
LMNA-223ENST00000515459 PLEKHO1Q53GL0 409 aaPredicted RBP21.69■■□□□ 1.06
LMNA-223ENST00000515459 CNTNAP4Q9C0A0 1308 aa21.69■■□□□ 1.06
LMNA-223ENST00000515459 RPS6KA4O75676 772 aa21.68■■□□□ 1.06
LMNA-223ENST00000515459 TRIM26Q12899 539 aaPredicted RBP21.68■■□□□ 1.06
LMNA-223ENST00000515459 BRCA1P38398 1863 aaKnown RBP21.68■■□□□ 1.06
LMNA-223ENST00000515459 GYS1P13807 737 aa21.67■■□□□ 1.06
LMNA-223ENST00000515459 CABP4P57796 275 aa21.67■■□□□ 1.06
LMNA-223ENST00000515459 PARP3Q9Y6F1 533 aa21.67■■□□□ 1.06
LMNA-223ENST00000515459 MYH14Q7Z406 1995 aaKnown RBP21.67■■□□□ 1.06
LMNA-223ENST00000515459 KDM6AO15550 1401 aaPredicted RBP21.66■■□□□ 1.06
LMNA-223ENST00000515459 DPEP1P16444 411 aa21.66■■□□□ 1.06
LMNA-223ENST00000515459 AMOTQ4VCS5 1084 aa21.66■■□□□ 1.06
LMNA-223ENST00000515459 ZNF530Q6P9A1 599 aaPredicted RBP21.66■■□□□ 1.06
LMNA-223ENST00000515459 ARHGAP27Q6ZUM4 889 aa21.66■■□□□ 1.06
LMNA-223ENST00000515459 TOMM70O94826 608 aa21.65■■□□□ 1.06
LMNA-223ENST00000515459 FCHSD2O94868 740 aa21.65■■□□□ 1.06
LMNA-223ENST00000515459 ARFGEF1Q9Y6D6 1849 aa21.64■■□□□ 1.05
LMNA-223ENST00000515459 MTHFSP49914 203 aa21.63■■□□□ 1.05
LMNA-223ENST00000515459 APLP1P51693 650 aa21.63■■□□□ 1.05
LMNA-223ENST00000515459 PTCD1O75127 700 aaKnown RBP21.62■■□□□ 1.05
LMNA-223ENST00000515459 C1orf141Q5JVX7 400 aa21.62■■□□□ 1.05
LMNA-223ENST00000515459 CRKLP46109 303 aaKnown RBP21.6■■□□□ 1.05
LMNA-223ENST00000515459 NFATC2IPQ8NCF5 419 aa21.6■■□□□ 1.05
LMNA-223ENST00000515459 PANK3Q9H999 370 aa21.6■■□□□ 1.05
LMNA-223ENST00000515459 PIM2Q9P1W9 311 aa21.6■■□□□ 1.05
LMNA-223ENST00000515459 KCNA3P22001 575 aa21.59■■□□□ 1.05
LMNA-223ENST00000515459 TJP1Q07157 1748 aa21.59■■□□□ 1.05
LMNA-223ENST00000515459 AEBP1Q8IUX7 1158 aa21.59■■□□□ 1.05
LMNA-223ENST00000515459 NMRK2Q9NPI5 230 aa21.59■■□□□ 1.05
LMNA-223ENST00000515459 SCN11AQ9UI33 1791 aa21.58■■□□□ 1.04
LMNA-223ENST00000515459 USP42Q9H9J4 1324 aaKnown RBP21.57■■□□□ 1.04
LMNA-223ENST00000515459 C9orf131Q5VYM1 1079 aa21.57■■□□□ 1.04
LMNA-223ENST00000515459 SRP68Q9UHB9 627 aaKnown RBP21.57■■□□□ 1.04
LMNA-223ENST00000515459 CLSPNQ9HAW4 1339 aa21.56■■□□□ 1.04
LMNA-223ENST00000515459 EIF4G2P78344 907 aaKnown RBP eCLIP21.56■■□□□ 1.04
LMNA-223ENST00000515459 FKBP8Q14318 412 aa21.56■■□□□ 1.04
LMNA-223ENST00000515459 DALRD3Q5D0E6 543 aaKnown RBP21.56■■□□□ 1.04
LMNA-223ENST00000515459 MORC1Q86VD1 984 aa21.56■■□□□ 1.04
LMNA-223ENST00000515459 SULT6B1Q6IMI4 303 aa21.55■■□□□ 1.04
LMNA-223ENST00000515459 DNAJC5GQ8N7S2 189 aa21.55■■□□□ 1.04
LMNA-223ENST00000515459 WDR90Q96KV7 1748 aa21.55■■□□□ 1.04
LMNA-223ENST00000515459 DDR1Q08345 913 aa21.54■■□□□ 1.04
LMNA-223ENST00000515459 C16orf71Q8IYS4 520 aaPredicted RBP21.54■■□□□ 1.04
LMNA-223ENST00000515459 ADAMTS7Q9UKP4 1686 aa21.53■■□□□ 1.04
LMNA-223ENST00000515459 RBM46Q8TBY0 533 aaKnown RBP21.53■■□□□ 1.04
LMNA-223ENST00000515459 HSPA5P11021 654 aaKnown RBP21.52■■□□□ 1.04
LMNA-223ENST00000515459 INTS5Q6P9B9 1019 aaKnown RBP21.52■■□□□ 1.04
LMNA-223ENST00000515459 KDM2BQ8NHM5 1336 aa21.52■■□□□ 1.03
LMNA-223ENST00000515459 SBF1O95248 1867 aa21.52■■□□□ 1.03
LMNA-223ENST00000515459 CHRNA5P30532 468 aa21.51■■□□□ 1.03
LMNA-223ENST00000515459 RNF181Q9P0P0 153 aa21.51■■□□□ 1.03
LMNA-223ENST00000515459 KCPQ6ZWJ8 1503 aa21.5■■□□□ 1.03
LMNA-223ENST00000515459 POLRMTO00411 1230 aaKnown RBP21.5■■□□□ 1.03
LMNA-223ENST00000515459 ZPR1O75312 459 aa21.5■■□□□ 1.03
LMNA-223ENST00000515459 TM4SF1P30408 202 aa21.5■■□□□ 1.03
LMNA-223ENST00000515459 IL13P35225 146 aa21.5■■□□□ 1.03
LMNA-223ENST00000515459 VIRMAQ69YN4 1812 aaKnown RBP21.5■■□□□ 1.03
LMNA-223ENST00000515459 AKAP4Q5JQC9 854 aa21.49■■□□□ 1.03
LMNA-223ENST00000515459 DNAJC10Q8IXB1 793 aa21.49■■□□□ 1.03
LMNA-223ENST00000515459 KNSTRNQ9Y448 316 aa21.49■■□□□ 1.03
LMNA-223ENST00000515459 TNRC6CQ9HCJ0 1690 aaKnown RBP21.49■■□□□ 1.03
LMNA-223ENST00000515459 FSTL1Q12841 308 aa21.48■■□□□ 1.03
LMNA-223ENST00000515459 USPL1Q5W0Q7 1092 aa21.48■■□□□ 1.03
LMNA-223ENST00000515459 SLC52A2Q9HAB3 445 aa21.48■■□□□ 1.03
LMNA-223ENST00000515459 PCGF6Q9BYE7 350 aa21.47■■□□□ 1.03
LMNA-223ENST00000515459 AFDNP55196 1824 aaKnown RBP21.47■■□□□ 1.03
LMNA-223ENST00000515459 SOS1Q07889 1333 aaPredicted RBP21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms