RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 PHKG2P15735 406 aa28.3■■■□□ 2.12
SQSTM1-215ENST00000514093 ARHGAP27Q6ZUM4 889 aa28.29■■■□□ 2.12
SQSTM1-215ENST00000514093 IFNL2Q8IZJ0 200 aa28.29■■■□□ 2.12
SQSTM1-215ENST00000514093 N4BP2Q86UW6 1770 aaPredicted RBP28.29■■■□□ 2.12
SQSTM1-215ENST00000514093 TOMM70O94826 608 aa28.28■■■□□ 2.12
SQSTM1-215ENST00000514093 TGFB2P61812 414 aa28.28■■■□□ 2.12
SQSTM1-215ENST00000514093 TRAPPC3LQ5T215 181 aa28.28■■■□□ 2.12
SQSTM1-215ENST00000514093 WASHC2AQ641Q2 1341 aa28.27■■■□□ 2.12
SQSTM1-215ENST00000514093 DNAJC5GQ8N7S2 189 aa28.27■■■□□ 2.12
SQSTM1-215ENST00000514093 NMRK2Q9NPI5 230 aa28.27■■■□□ 2.12
SQSTM1-215ENST00000514093 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.27■■■□□ 2.12
SQSTM1-215ENST00000514093 RTCBQ9Y3I0 505 aaKnown RBP28.27■■■□□ 2.12
SQSTM1-215ENST00000514093 SLC4A9Q96Q91 983 aa28.26■■■□□ 2.11
SQSTM1-215ENST00000514093 KIAA1551Q9HCM1 1747 aa28.26■■■□□ 2.11
SQSTM1-215ENST00000514093 DPEP1P16444 411 aa28.25■■■□□ 2.11
SQSTM1-215ENST00000514093 CDCA8Q53HL2 280 aa28.25■■■□□ 2.11
SQSTM1-215ENST00000514093 NLGN1Q8N2Q7 840 aa28.24■■■□□ 2.11
SQSTM1-215ENST00000514093 ARHGEF1Q92888 912 aaKnown RBP28.24■■■□□ 2.11
SQSTM1-215ENST00000514093 RBM42Q9BTD8 480 aaKnown RBP28.24■■■□□ 2.11
SQSTM1-215ENST00000514093 KIF13BQ9NQT8 1826 aa28.23■■■□□ 2.11
SQSTM1-215ENST00000514093 FCHSD2O94868 740 aa28.23■■■□□ 2.11
SQSTM1-215ENST00000514093 C10orf71Q711Q0 1435 aa28.22■■■□□ 2.11
SQSTM1-215ENST00000514093 CCDC87Q9NVE4 849 aa28.21■■■□□ 2.11
SQSTM1-215ENST00000514093 POLKQ9UBT6 870 aa28.21■■■□□ 2.11
SQSTM1-215ENST00000514093 GYS1P13807 737 aa28.2■■■□□ 2.1
SQSTM1-215ENST00000514093 KDRP35968 1356 aa28.2■■■□□ 2.1
SQSTM1-215ENST00000514093 ANKRD26Q9UPS8 1709 aa28.18■■■□□ 2.1
SQSTM1-215ENST00000514093 RFC4P35249 363 aa28.18■■■□□ 2.1
SQSTM1-215ENST00000514093 HTRA3P83110 453 aa28.18■■■□□ 2.1
SQSTM1-215ENST00000514093 EIF4A2Q14240 407 aaKnown RBP28.18■■■□□ 2.1
SQSTM1-215ENST00000514093 C9orf131Q5VYM1 1079 aa28.18■■■□□ 2.1
SQSTM1-215ENST00000514093 PARP3Q9Y6F1 533 aa28.18■■■□□ 2.1
SQSTM1-215ENST00000514093 KCNA3P22001 575 aa28.17■■■□□ 2.1
SQSTM1-215ENST00000514093 TNNT2P45379 298 aaPredicted RBP28.17■■■□□ 2.1
SQSTM1-215ENST00000514093 RC3H1Q5TC82 1133 aaKnown RBP28.16■■■□□ 2.1
SQSTM1-215ENST00000514093 C4AP0C0L4 1744 aa28.15■■■□□ 2.1
SQSTM1-215ENST00000514093 RPS6KA4O75676 772 aa28.15■■■□□ 2.1
SQSTM1-215ENST00000514093 ADRA2BP18089 450 aa28.15■■■□□ 2.1
SQSTM1-215ENST00000514093 ERVV-2B6SEH9 535 aa28.14■■■□□ 2.1
SQSTM1-215ENST00000514093 C16orf71Q8IYS4 520 aaPredicted RBP28.13■■■□□ 2.09
SQSTM1-215ENST00000514093 RBM46Q8TBY0 533 aaKnown RBP28.13■■■□□ 2.09
SQSTM1-215ENST00000514093 CNTNAP4Q9C0A0 1308 aa28.13■■■□□ 2.09
SQSTM1-215ENST00000514093 CABP4P57796 275 aa28.1■■■□□ 2.09
SQSTM1-215ENST00000514093 DCAF5Q96JK2 942 aa28.1■■■□□ 2.09
SQSTM1-215ENST00000514093 PIM2Q9P1W9 311 aa28.1■■■□□ 2.09
SQSTM1-215ENST00000514093 SRP68Q9UHB9 627 aaKnown RBP28.1■■■□□ 2.09
SQSTM1-215ENST00000514093 BRCA1P38398 1863 aaKnown RBP28.1■■■□□ 2.09
SQSTM1-215ENST00000514093 COL5A3P25940 1745 aaPredicted RBP28.09■■■□□ 2.09
SQSTM1-215ENST00000514093 PTCD1O75127 700 aaKnown RBP28.09■■■□□ 2.09
SQSTM1-215ENST00000514093 WDR90Q96KV7 1748 aa28.09■■■□□ 2.09
SQSTM1-215ENST00000514093 HSP90AB1P08238 724 aaKnown RBP28.08■■■□□ 2.09
SQSTM1-215ENST00000514093 POLR3GLQ9BT43 218 aa28.08■■■□□ 2.09
SQSTM1-215ENST00000514093 MYH14Q7Z406 1995 aaKnown RBP28.08■■■□□ 2.09
SQSTM1-215ENST00000514093 KCPQ6ZWJ8 1503 aa28.08■■■□□ 2.08
SQSTM1-215ENST00000514093 ZNF831Q5JPB2 1677 aa28.07■■■□□ 2.08
SQSTM1-215ENST00000514093 FKBP8Q14318 412 aa28.07■■■□□ 2.08
SQSTM1-215ENST00000514093 PLEKHO1Q53GL0 409 aaPredicted RBP28.07■■■□□ 2.08
SQSTM1-215ENST00000514093 DALRD3Q5D0E6 543 aaKnown RBP28.07■■■□□ 2.08
SQSTM1-215ENST00000514093 ZNF530Q6P9A1 599 aaPredicted RBP28.07■■■□□ 2.08
SQSTM1-215ENST00000514093 KLRG1Q96E93 195 aa28.07■■■□□ 2.08
SQSTM1-215ENST00000514093 RRAGCQ9HB90 399 aa28.07■■■□□ 2.08
SQSTM1-215ENST00000514093 RNF181Q9P0P0 153 aa28.07■■■□□ 2.08
SQSTM1-215ENST00000514093 CHRNA5P30532 468 aa28.06■■■□□ 2.08
SQSTM1-215ENST00000514093 DDR1Q08345 913 aa28.06■■■□□ 2.08
SQSTM1-215ENST00000514093 COL13A1Q5TAT6 717 aaPredicted RBP28.06■■■□□ 2.08
SQSTM1-215ENST00000514093 KDM6AO15550 1401 aaPredicted RBP28.06■■■□□ 2.08
SQSTM1-215ENST00000514093 CRKLP46109 303 aaKnown RBP28.05■■■□□ 2.08
SQSTM1-215ENST00000514093 PLEKHG2Q9H7P9 1386 aa28.05■■■□□ 2.08
SQSTM1-215ENST00000514093 ARFGEF1Q9Y6D6 1849 aa28.04■■■□□ 2.08
SQSTM1-215ENST00000514093 KDM2BQ8NHM5 1336 aa28.03■■■□□ 2.08
SQSTM1-215ENST00000514093 MTHFSP49914 203 aa28.03■■■□□ 2.08
SQSTM1-215ENST00000514093 FSTL1Q12841 308 aa28.03■■■□□ 2.08
SQSTM1-215ENST00000514093 NFATC2IPQ8NCF5 419 aa28.02■■■□□ 2.08
SQSTM1-215ENST00000514093 USP42Q9H9J4 1324 aaKnown RBP28.01■■■□□ 2.07
SQSTM1-215ENST00000514093 AEBP1Q8IUX7 1158 aa28■■■□□ 2.07
SQSTM1-215ENST00000514093 JMYQ8N9B5 988 aa28■■■□□ 2.07
SQSTM1-215ENST00000514093 CAPN15O75808 1086 aa27.99■■■□□ 2.07
SQSTM1-215ENST00000514093 AMOTQ4VCS5 1084 aa27.99■■■□□ 2.07
SQSTM1-215ENST00000514093 C1orf141Q5JVX7 400 aa27.97■■■□□ 2.07
SQSTM1-215ENST00000514093 POLRMTO00411 1230 aaKnown RBP27.96■■■□□ 2.07
SQSTM1-215ENST00000514093 INTS5Q6P9B9 1019 aaKnown RBP27.96■■■□□ 2.07
SQSTM1-215ENST00000514093 TM4SF1P30408 202 aa27.95■■■□□ 2.06
SQSTM1-215ENST00000514093 RASSF7Q02833 373 aa27.95■■■□□ 2.06
SQSTM1-215ENST00000514093 USPL1Q5W0Q7 1092 aa27.94■■■□□ 2.06
SQSTM1-215ENST00000514093 TJP1Q07157 1748 aa27.92■■■□□ 2.06
SQSTM1-215ENST00000514093 SBF1O95248 1867 aa27.92■■■□□ 2.06
SQSTM1-215ENST00000514093 SMC1BQ8NDV3 1235 aa27.92■■■□□ 2.06
SQSTM1-215ENST00000514093 ZPR1O75312 459 aa27.91■■■□□ 2.06
SQSTM1-215ENST00000514093 DNAJC10Q8IXB1 793 aa27.91■■■□□ 2.06
SQSTM1-215ENST00000514093 SULT6B1Q6IMI4 303 aa27.9■■■□□ 2.06
SQSTM1-215ENST00000514093 TNS4Q8IZW8 715 aa27.9■■■□□ 2.06
SQSTM1-215ENST00000514093 PCNTO95613 3336 aa27.89■■■□□ 2.06
SQSTM1-215ENST00000514093 TNRC6CQ9HCJ0 1690 aaKnown RBP27.89■■■□□ 2.06
SQSTM1-215ENST00000514093 PRELPP51888 382 aa27.89■■■□□ 2.06
SQSTM1-215ENST00000514093 PANK3Q9H999 370 aa27.88■■■□□ 2.05
SQSTM1-215ENST00000514093 ADAMTS7Q9UKP4 1686 aa27.87■■■□□ 2.05
SQSTM1-215ENST00000514093 NFIXQ14938 502 aa27.86■■■□□ 2.05
SQSTM1-215ENST00000514093 SOS1Q07889 1333 aaPredicted RBP27.86■■■□□ 2.05
SQSTM1-215ENST00000514093 LMNB1P20700 586 aa27.84■■■□□ 2.05
SQSTM1-215ENST00000514093 SLC39A6Q13433 755 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms