RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 MPRIPQ6WCQ1 1025 aa18.88■□□□□ 0.61
VCAN-211ENST00000513984 RAPGEF4Q8WZA2 1011 aa18.88■□□□□ 0.61
VCAN-211ENST00000513984 HOXB7P09629 217 aa18.87■□□□□ 0.61
VCAN-211ENST00000513984 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.87■□□□□ 0.61
VCAN-211ENST00000513984 EIF4A1P60842 406 aaKnown RBP18.86■□□□□ 0.61
VCAN-211ENST00000513984 G2E3Q7L622 706 aa18.86■□□□□ 0.61
VCAN-211ENST00000513984 CSB-PGBD3P0DP91 1061 aa18.85■□□□□ 0.61
VCAN-211ENST00000513984 TATP17735 454 aaPredicted RBP18.85■□□□□ 0.61
VCAN-211ENST00000513984 ANP32AP39687 249 aaKnown RBP18.84■□□□□ 0.61
VCAN-211ENST00000513984 PXDNLA1KZ92 1463 aa18.84■□□□□ 0.61
VCAN-211ENST00000513984 BTBD11A6QL63 1104 aa18.84■□□□□ 0.61
VCAN-211ENST00000513984 C1orf115Q9H7X2 142 aa18.84■□□□□ 0.61
VCAN-211ENST00000513984 ROBO1Q9Y6N7 1651 aa18.83■□□□□ 0.61
VCAN-211ENST00000513984 COL5A2P05997 1499 aaPredicted RBP18.83■□□□□ 0.6
VCAN-211ENST00000513984 MRC1P22897 1456 aa18.83■□□□□ 0.6
VCAN-211ENST00000513984 FLIIQ13045 1269 aa18.83■□□□□ 0.6
VCAN-211ENST00000513984 CHMP4AQ9BY43 222 aa18.83■□□□□ 0.6
VCAN-211ENST00000513984 SPG7Q9UQ90 795 aa18.83■□□□□ 0.6
VCAN-211ENST00000513984 KDM6AO15550 1401 aaPredicted RBP18.83■□□□□ 0.6
VCAN-211ENST00000513984 ATP10DQ9P241 1426 aa18.82■□□□□ 0.6
VCAN-211ENST00000513984 PRDM11Q9NQV5 511 aa18.82■□□□□ 0.6
VCAN-211ENST00000513984 CCT4P50991 539 aaKnown RBP18.81■□□□□ 0.6
VCAN-211ENST00000513984 HDGFL1Q5TGJ6 251 aa18.81■□□□□ 0.6
VCAN-211ENST00000513984 SIRT2Q8IXJ6 389 aa18.81■□□□□ 0.6
VCAN-211ENST00000513984 GCC1Q96CN9 775 aa18.81■□□□□ 0.6
VCAN-211ENST00000513984 HEG1Q9ULI3 1381 aa18.81■□□□□ 0.6
VCAN-211ENST00000513984 WDR17Q8IZU2 1322 aa18.81■□□□□ 0.6
VCAN-211ENST00000513984 AHDC1Q5TGY3 1603 aaPredicted RBP18.81■□□□□ 0.6
VCAN-211ENST00000513984 MSH5O43196 834 aa18.81■□□□□ 0.6
VCAN-211ENST00000513984 PHKG2P15735 406 aa18.81■□□□□ 0.6
VCAN-211ENST00000513984 LTBP4Q8N2S1 1624 aa18.8■□□□□ 0.6
VCAN-211ENST00000513984 KCNQ3O43525 872 aa18.8■□□□□ 0.6
VCAN-211ENST00000513984 NUCB1Q02818 461 aa18.8■□□□□ 0.6
VCAN-211ENST00000513984 SHANK3Q9BYB0 1731 aa18.79■□□□□ 0.6
VCAN-211ENST00000513984 F6X3S4 739 aa18.79■□□□□ 0.6
VCAN-211ENST00000513984 FKBP5Q13451 457 aaPredicted RBP18.79■□□□□ 0.6
VCAN-211ENST00000513984 IFNL2Q8IZJ0 200 aa18.79■□□□□ 0.6
VCAN-211ENST00000513984 NECTIN2Q92692 538 aa18.79■□□□□ 0.6
VCAN-211ENST00000513984 COL22A1Q8NFW1 1626 aaPredicted RBP18.79■□□□□ 0.6
VCAN-211ENST00000513984 C5P01031 1676 aa18.78■□□□□ 0.6
VCAN-211ENST00000513984 MEIS3Q99687 375 aa18.77■□□□□ 0.6
VCAN-211ENST00000513984 RPAP2Q8IXW5 612 aaPredicted RBP18.77■□□□□ 0.59
VCAN-211ENST00000513984 ANKRD44Q8N8A2 993 aa18.77■□□□□ 0.59
VCAN-211ENST00000513984 SLC52A2Q9HAB3 445 aa18.77■□□□□ 0.59
VCAN-211ENST00000513984 SLC4A10Q6U841 1118 aa18.76■□□□□ 0.59
VCAN-211ENST00000513984 CHD1LQ86WJ1 897 aa18.76■□□□□ 0.59
VCAN-211ENST00000513984 IPO9Q96P70 1041 aaKnown RBP18.76■□□□□ 0.59
VCAN-211ENST00000513984 CYP27B1O15528 508 aa18.75■□□□□ 0.59
VCAN-211ENST00000513984 GIGYF1O75420 1035 aaPredicted RBP18.74■□□□□ 0.59
VCAN-211ENST00000513984 EIF2S2P20042 333 aaKnown RBP18.74■□□□□ 0.59
VCAN-211ENST00000513984 CEP85Q6P2H3 762 aa18.74■□□□□ 0.59
VCAN-211ENST00000513984 DCAF5Q96JK2 942 aa18.74■□□□□ 0.59
VCAN-211ENST00000513984 COL14A1Q05707 1796 aaKnown RBP18.74■□□□□ 0.59
VCAN-211ENST00000513984 HSP90AB1P08238 724 aaKnown RBP18.74■□□□□ 0.59
VCAN-211ENST00000513984 NPM2Q86SE8 214 aaKnown RBP18.74■□□□□ 0.59
VCAN-211ENST00000513984 CHPF2Q9P2E5 772 aa18.74■□□□□ 0.59
VCAN-211ENST00000513984 TOM1L2Q6ZVM7 507 aa18.73■□□□□ 0.59
VCAN-211ENST00000513984 DCTPP1Q9H773 170 aa18.73■□□□□ 0.59
VCAN-211ENST00000513984 PHAXQ9H814 394 aaKnown RBP18.73■□□□□ 0.59
VCAN-211ENST00000513984 LAMB4A4D0S4 1761 aa18.72■□□□□ 0.59
VCAN-211ENST00000513984 CARD10Q9BWT7 1032 aa18.72■□□□□ 0.59
VCAN-211ENST00000513984 LNPKQ9C0E8 428 aa18.72■□□□□ 0.59
VCAN-211ENST00000513984 ZNF790Q6PG37 636 aa18.72■□□□□ 0.59
VCAN-211ENST00000513984 DBF4Q9UBU7 674 aaPredicted RBP18.72■□□□□ 0.59
VCAN-211ENST00000513984 COL16A1Q07092 1604 aaPredicted RBP18.71■□□□□ 0.59
VCAN-211ENST00000513984 ANKRD45Q5TZF3 282 aa18.71■□□□□ 0.59
VCAN-211ENST00000513984 GLI3P10071 1580 aa18.71■□□□□ 0.59
VCAN-211ENST00000513984 UBR2Q8IWV8 1755 aa18.71■□□□□ 0.59
VCAN-211ENST00000513984 PCDH11XQ9BZA7 1347 aa18.7■□□□□ 0.58
VCAN-211ENST00000513984 PCDH11YQ9BZA8 1340 aa18.7■□□□□ 0.58
VCAN-211ENST00000513984 GNAI3P08754 354 aa18.7■□□□□ 0.58
VCAN-211ENST00000513984 PAPPAQ13219 1627 aa18.7■□□□□ 0.58
VCAN-211ENST00000513984 NFATC2IPQ8NCF5 419 aa18.7■□□□□ 0.58
VCAN-211ENST00000513984 GNAI2P04899 355 aa18.69■□□□□ 0.58
VCAN-211ENST00000513984 PHLPP1O60346 1717 aa18.68■□□□□ 0.58
VCAN-211ENST00000513984 PLCH1Q4KWH8 1693 aa18.68■□□□□ 0.58
VCAN-211ENST00000513984 ZCRB1Q8TBF4 217 aaKnown RBP18.68■□□□□ 0.58
VCAN-211ENST00000513984 WNK3Q9BYP7 1800 aa18.68■□□□□ 0.58
VCAN-211ENST00000513984 HMMRO75330 724 aa18.67■□□□□ 0.58
VCAN-211ENST00000513984 IL2RBP14784 551 aa18.67■□□□□ 0.58
VCAN-211ENST00000513984 LARP1Q6PKG0 1096 aaKnown RBP18.67■□□□□ 0.58
VCAN-211ENST00000513984 ADCY9O60503 1353 aa18.67■□□□□ 0.58
VCAN-211ENST00000513984 PRAMEF22A3QJZ6 481 aa18.67■□□□□ 0.58
VCAN-211ENST00000513984 SLC39A6Q13433 755 aa18.67■□□□□ 0.58
VCAN-211ENST00000513984 DNAAF4Q8WXU2 420 aa18.67■□□□□ 0.58
VCAN-211ENST00000513984 TOGARAM1Q9Y4F4 1720 aa18.66■□□□□ 0.58
VCAN-211ENST00000513984 NOP58Q9Y2X3 529 aaKnown RBP18.66■□□□□ 0.58
VCAN-211ENST00000513984 ANXA1P04083 346 aa18.65■□□□□ 0.58
VCAN-211ENST00000513984 EVA1CP58658 441 aa18.65■□□□□ 0.58
VCAN-211ENST00000513984 NKX1-1Q15270 411 aaPredicted RBP18.65■□□□□ 0.58
VCAN-211ENST00000513984 DDRGK1Q96HY6 314 aa18.65■□□□□ 0.58
VCAN-211ENST00000513984 SRCIN1Q9C0H9 1055 aa18.65■□□□□ 0.58
VCAN-211ENST00000513984 USP44Q9H0E7 712 aa18.65■□□□□ 0.58
VCAN-211ENST00000513984 STRN4Q9NRL3 753 aa18.65■□□□□ 0.58
VCAN-211ENST00000513984 HYPKQ9NX55 129 aa18.65■□□□□ 0.58
VCAN-211ENST00000513984 PI4KAP2A4QPH2 592 aa18.65■□□□□ 0.58
VCAN-211ENST00000513984 SEC24BO95487 1268 aa18.65■□□□□ 0.58
VCAN-211ENST00000513984 PROSER3Q2NL68 480 aa18.65■□□□□ 0.58
VCAN-211ENST00000513984 PI4KAP1Q8N8J0 262 aa18.65■□□□□ 0.58
VCAN-211ENST00000513984 DDX21Q9NR30 783 aaKnown RBP eCLIP18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms