RNA–Protein interactions for RNA: ENST00000513538.1

TCOF1-212, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-212ENST00000513538 TMOD3Q9NYL9 352 aa13.41□□□□□ -0.26
TCOF1-212ENST00000513538 MYH14Q7Z406 1995 aaKnown RBP13.41□□□□□ -0.26
TCOF1-212ENST00000513538 PXDNLA1KZ92 1463 aa13.41□□□□□ -0.26
TCOF1-212ENST00000513538 BRCA1P38398 1863 aaKnown RBP13.4□□□□□ -0.26
TCOF1-212ENST00000513538 C4AP0C0L4 1744 aa13.4□□□□□ -0.26
TCOF1-212ENST00000513538 GNPATO15228 680 aa13.4□□□□□ -0.26
TCOF1-212ENST00000513538 GPBP1L1Q9HC44 474 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-212ENST00000513538 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.4□□□□□ -0.26
TCOF1-212ENST00000513538 CEP350Q5VT06 3117 aa13.4□□□□□ -0.26
TCOF1-212ENST00000513538 HMGB2P26583 209 aaKnown RBP13.39□□□□□ -0.27
TCOF1-212ENST00000513538 ATP6V1AP38606 617 aa13.39□□□□□ -0.27
TCOF1-212ENST00000513538 EIF4A2Q14240 407 aaKnown RBP13.39□□□□□ -0.27
TCOF1-212ENST00000513538 IFNL2Q8IZJ0 200 aa13.39□□□□□ -0.27
TCOF1-212ENST00000513538 KDM6AO15550 1401 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-212ENST00000513538 MMP10P09238 476 aa13.38□□□□□ -0.27
TCOF1-212ENST00000513538 C10orf71Q711Q0 1435 aa13.38□□□□□ -0.27
TCOF1-212ENST00000513538 PLEKHG2Q9H7P9 1386 aa13.36□□□□□ -0.27
TCOF1-212ENST00000513538 KIF3CO14782 793 aa13.36□□□□□ -0.27
TCOF1-212ENST00000513538 HSPA6P17066 643 aa13.36□□□□□ -0.27
TCOF1-212ENST00000513538 TNNT2P45379 298 aaPredicted RBP13.36□□□□□ -0.27
TCOF1-212ENST00000513538 TJP1Q07157 1748 aa13.36□□□□□ -0.27
TCOF1-212ENST00000513538 IFFO2Q5TF58 517 aa13.35□□□□□ -0.27
TCOF1-212ENST00000513538 ARFGEF1Q9Y6D6 1849 aa13.34□□□□□ -0.27
TCOF1-212ENST00000513538 ADAMTS7Q9UKP4 1686 aa13.34□□□□□ -0.27
TCOF1-212ENST00000513538 A0A0G2JLW4 131 aa13.33□□□□□ -0.28
TCOF1-212ENST00000513538 ARHGEF1Q92888 912 aaKnown RBP13.33□□□□□ -0.28
TCOF1-212ENST00000513538 POLR3GLQ9BT43 218 aa13.33□□□□□ -0.28
TCOF1-212ENST00000513538 CNTNAP4Q9C0A0 1308 aa13.33□□□□□ -0.28
TCOF1-212ENST00000513538 SCN11AQ9UI33 1791 aa13.32□□□□□ -0.28
TCOF1-212ENST00000513538 ERVV-2B6SEH9 535 aa13.32□□□□□ -0.28
TCOF1-212ENST00000513538 GYS1P13807 737 aa13.32□□□□□ -0.28
TCOF1-212ENST00000513538 TRIM26Q12899 539 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-212ENST00000513538 AEBP1Q8IUX7 1158 aa13.32□□□□□ -0.28
TCOF1-212ENST00000513538 RTCBQ9Y3I0 505 aaKnown RBP13.32□□□□□ -0.28
TCOF1-212ENST00000513538 DPEP1P16444 411 aa13.31□□□□□ -0.28
TCOF1-212ENST00000513538 TRAPPC3LQ5T215 181 aa13.31□□□□□ -0.28
TCOF1-212ENST00000513538 RC3H1Q5TC82 1133 aaKnown RBP13.31□□□□□ -0.28
TCOF1-212ENST00000513538 ZNF530Q6P9A1 599 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-212ENST00000513538 DCAF5Q96JK2 942 aa13.31□□□□□ -0.28
TCOF1-212ENST00000513538 RBM42Q9BTD8 480 aaKnown RBP13.31□□□□□ -0.28
TCOF1-212ENST00000513538 BCS1LQ9Y276 419 aa13.31□□□□□ -0.28
TCOF1-212ENST00000513538 VIRMAQ69YN4 1812 aaKnown RBP13.31□□□□□ -0.28
TCOF1-212ENST00000513538 RPS6KA4O75676 772 aa13.3□□□□□ -0.28
TCOF1-212ENST00000513538 TGFB2P61812 414 aa13.3□□□□□ -0.28
TCOF1-212ENST00000513538 NLGN1Q8N2Q7 840 aa13.3□□□□□ -0.28
TCOF1-212ENST00000513538 KCNA3P22001 575 aa13.29□□□□□ -0.28
TCOF1-212ENST00000513538 PLEKHO1Q53GL0 409 aaPredicted RBP13.29□□□□□ -0.28
TCOF1-212ENST00000513538 PANK3Q9H999 370 aa13.29□□□□□ -0.28
TCOF1-212ENST00000513538 CABP4P57796 275 aa13.28□□□□□ -0.28
TCOF1-212ENST00000513538 DDR1Q08345 913 aa13.28□□□□□ -0.28
TCOF1-212ENST00000513538 NMRK2Q9NPI5 230 aa13.28□□□□□ -0.28
TCOF1-212ENST00000513538 SRP68Q9UHB9 627 aaKnown RBP13.28□□□□□ -0.28
TCOF1-212ENST00000513538 TIMELESSQ9UNS1 1208 aa13.28□□□□□ -0.28
TCOF1-212ENST00000513538 PTCD1O75127 700 aaKnown RBP13.27□□□□□ -0.29
TCOF1-212ENST00000513538 HSP90AB1P08238 724 aaKnown RBP13.27□□□□□ -0.29
TCOF1-212ENST00000513538 RFC4P35249 363 aa13.27□□□□□ -0.29
TCOF1-212ENST00000513538 CRKLP46109 303 aaKnown RBP13.27□□□□□ -0.29
TCOF1-212ENST00000513538 ARHGAP27Q6ZUM4 889 aa13.27□□□□□ -0.29
TCOF1-212ENST00000513538 CCDC87Q9NVE4 849 aa13.27□□□□□ -0.29
TCOF1-212ENST00000513538 SBF1O95248 1867 aa13.27□□□□□ -0.29
TCOF1-212ENST00000513538 FCHSD2O94868 740 aa13.26□□□□□ -0.29
TCOF1-212ENST00000513538 HSPA5P11021 654 aaKnown RBP13.26□□□□□ -0.29
TCOF1-212ENST00000513538 AFDNP55196 1824 aaKnown RBP13.26□□□□□ -0.29
TCOF1-212ENST00000513538 FKBP8Q14318 412 aa13.26□□□□□ -0.29
TCOF1-212ENST00000513538 AMOTQ4VCS5 1084 aa13.26□□□□□ -0.29
TCOF1-212ENST00000513538 NFATC2IPQ8NCF5 419 aa13.26□□□□□ -0.29
TCOF1-212ENST00000513538 WDR90Q96KV7 1748 aa13.26□□□□□ -0.29
TCOF1-212ENST00000513538 USP42Q9H9J4 1324 aaKnown RBP13.26□□□□□ -0.29
TCOF1-212ENST00000513538 MRC1P22897 1456 aa13.25□□□□□ -0.29
TCOF1-212ENST00000513538 MTHFSP49914 203 aa13.25□□□□□ -0.29
TCOF1-212ENST00000513538 PARP3Q9Y6F1 533 aa13.25□□□□□ -0.29
TCOF1-212ENST00000513538 TOMM70O94826 608 aa13.24□□□□□ -0.29
TCOF1-212ENST00000513538 C9orf131Q5VYM1 1079 aa13.24□□□□□ -0.29
TCOF1-212ENST00000513538 SULT6B1Q6IMI4 303 aa13.24□□□□□ -0.29
TCOF1-212ENST00000513538 INTS5Q6P9B9 1019 aaKnown RBP13.24□□□□□ -0.29
TCOF1-212ENST00000513538 DNAJC5GQ8N7S2 189 aa13.24□□□□□ -0.29
TCOF1-212ENST00000513538 NRXN2Q9P2S2 1712 aa13.24□□□□□ -0.29
TCOF1-212ENST00000513538 KCPQ6ZWJ8 1503 aa13.23□□□□□ -0.29
TCOF1-212ENST00000513538 DLEC1Q9Y238 1755 aa13.23□□□□□ -0.29
TCOF1-212ENST00000513538 CHRNA5P30532 468 aa13.23□□□□□ -0.29
TCOF1-212ENST00000513538 IL13P35225 146 aa13.23□□□□□ -0.29
TCOF1-212ENST00000513538 EIF4G2P78344 907 aaKnown RBP eCLIP13.23□□□□□ -0.29
TCOF1-212ENST00000513538 C1orf141Q5JVX7 400 aa13.23□□□□□ -0.29
TCOF1-212ENST00000513538 UBR2Q8IWV8 1755 aa13.22□□□□□ -0.29
TCOF1-212ENST00000513538 CLSPNQ9HAW4 1339 aa13.22□□□□□ -0.29
TCOF1-212ENST00000513538 APLP1P51693 650 aa13.22□□□□□ -0.29
TCOF1-212ENST00000513538 MORC1Q86VD1 984 aa13.22□□□□□ -0.29
TCOF1-212ENST00000513538 DNAJC10Q8IXB1 793 aa13.22□□□□□ -0.29
TCOF1-212ENST00000513538 TNRC6CQ9HCJ0 1690 aaKnown RBP13.21□□□□□ -0.29
TCOF1-212ENST00000513538 SOS1Q07889 1333 aaPredicted RBP13.21□□□□□ -0.29
TCOF1-212ENST00000513538 POLRMTO00411 1230 aaKnown RBP13.21□□□□□ -0.29
TCOF1-212ENST00000513538 PCGF6Q9BYE7 350 aa13.21□□□□□ -0.29
TCOF1-212ENST00000513538 PIM2Q9P1W9 311 aa13.21□□□□□ -0.29
TCOF1-212ENST00000513538 TM4SF1P30408 202 aa13.2□□□□□ -0.3
TCOF1-212ENST00000513538 HTRA3P83110 453 aa13.2□□□□□ -0.3
TCOF1-212ENST00000513538 DALRD3Q5D0E6 543 aaKnown RBP13.2□□□□□ -0.3
TCOF1-212ENST00000513538 LGR6Q9HBX8 967 aa13.2□□□□□ -0.3
TCOF1-212ENST00000513538 CCDC88AQ3V6T2 1871 aa13.19□□□□□ -0.3
TCOF1-212ENST00000513538 SLC39A6Q13433 755 aa13.19□□□□□ -0.3
TCOF1-212ENST00000513538 AMER1Q5JTC6 1135 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms