RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 FOXN1O15353 648 aa13.12□□□□□ -0.31
NUP54-211ENST00000512151 CYP27B1O15528 508 aa13.12□□□□□ -0.31
NUP54-211ENST00000512151 SMARCC1Q92922 1105 aaPredicted RBP13.12□□□□□ -0.31
NUP54-211ENST00000512151 DCAF5Q96JK2 942 aa13.12□□□□□ -0.31
NUP54-211ENST00000512151 EDC4Q6P2E9 1401 aaKnown RBP13.12□□□□□ -0.31
NUP54-211ENST00000512151 HMGB2P26583 209 aaKnown RBP13.11□□□□□ -0.31
NUP54-211ENST00000512151 SLC12A5Q9H2X9 1139 aa13.11□□□□□ -0.31
NUP54-211ENST00000512151 C4AP0C0L4 1744 aa13.1□□□□□ -0.31
NUP54-211ENST00000512151 LOC102724428A0A0B4J2F2 783 aa13.1□□□□□ -0.31
NUP54-211ENST00000512151 SIK1P57059 783 aa13.1□□□□□ -0.31
NUP54-211ENST00000512151 AMPHP49418 695 aa13.09□□□□□ -0.31
NUP54-211ENST00000512151 CGNL1Q0VF96 1302 aa13.09□□□□□ -0.31
NUP54-211ENST00000512151 PCDH11XQ9BZA7 1347 aa13.09□□□□□ -0.31
NUP54-211ENST00000512151 PCDH11YQ9BZA8 1340 aa13.09□□□□□ -0.31
NUP54-211ENST00000512151 A0A1W2PP64 1363 aa13.09□□□□□ -0.31
NUP54-211ENST00000512151 TATP17735 454 aaPredicted RBP13.08□□□□□ -0.31
NUP54-211ENST00000512151 TMF1P82094 1093 aa13.08□□□□□ -0.31
NUP54-211ENST00000512151 TMC1Q8TDI8 760 aa13.08□□□□□ -0.31
NUP54-211ENST00000512151 RAPGEF4Q8WZA2 1011 aa13.08□□□□□ -0.31
NUP54-211ENST00000512151 CCDC87Q9NVE4 849 aa13.08□□□□□ -0.31
NUP54-211ENST00000512151 MKRN1Q9UHC7 482 aaKnown RBP13.08□□□□□ -0.31
NUP54-211ENST00000512151 RASSF7Q02833 373 aa13.07□□□□□ -0.32
NUP54-211ENST00000512151 HDGFL2Q7Z4V5 671 aaPredicted RBP13.07□□□□□ -0.32
NUP54-211ENST00000512151 PRDM10Q9NQV6 1147 aa13.07□□□□□ -0.32
NUP54-211ENST00000512151 PIM2Q9P1W9 311 aa13.07□□□□□ -0.32
NUP54-211ENST00000512151 ASAP1Q9ULH1 1129 aa13.07□□□□□ -0.32
NUP54-211ENST00000512151 POTECB2RU33 542 aa13.07□□□□□ -0.32
NUP54-211ENST00000512151 GYS1P13807 737 aa13.07□□□□□ -0.32
NUP54-211ENST00000512151 VEGFAP15692 232 aaPredicted RBP13.07□□□□□ -0.32
NUP54-211ENST00000512151 DSG3P32926 999 aa13.07□□□□□ -0.32
NUP54-211ENST00000512151 DALRD3Q5D0E6 543 aaKnown RBP13.07□□□□□ -0.32
NUP54-211ENST00000512151 NLGN1Q8N2Q7 840 aa13.07□□□□□ -0.32
NUP54-211ENST00000512151 KDM6AO15550 1401 aaPredicted RBP13.06□□□□□ -0.32
NUP54-211ENST00000512151 CHRNA5P30532 468 aa13.06□□□□□ -0.32
NUP54-211ENST00000512151 RRS1Q15050 365 aaKnown RBP13.06□□□□□ -0.32
NUP54-211ENST00000512151 GLTPD2A6NH11 291 aa13.05□□□□□ -0.32
NUP54-211ENST00000512151 ATP6V1AP38606 617 aa13.05□□□□□ -0.32
NUP54-211ENST00000512151 TRAPPC3LQ5T215 181 aa13.05□□□□□ -0.32
NUP54-211ENST00000512151 ARHGEF1Q92888 912 aaKnown RBP13.05□□□□□ -0.32
NUP54-211ENST00000512151 ABHD8Q96I13 439 aa13.05□□□□□ -0.32
NUP54-211ENST00000512151 L3MBTL2Q969R5 705 aa13.04□□□□□ -0.32
NUP54-211ENST00000512151 SLC4A9Q96Q91 983 aa13.04□□□□□ -0.32
NUP54-211ENST00000512151 PARP3Q9Y6F1 533 aa13.04□□□□□ -0.32
NUP54-211ENST00000512151 RTL1A6NKG5 1358 aa13.04□□□□□ -0.32
NUP54-211ENST00000512151 DDR1Q08345 913 aa13.03□□□□□ -0.32
NUP54-211ENST00000512151 NKX1-1Q15270 411 aaPredicted RBP13.03□□□□□ -0.32
NUP54-211ENST00000512151 COG3Q96JB2 828 aa13.03□□□□□ -0.32
NUP54-211ENST00000512151 CREBZFQ9NS37 354 aa13.03□□□□□ -0.32
NUP54-211ENST00000512151 RTCBQ9Y3I0 505 aaKnown RBP13.03□□□□□ -0.32
NUP54-211ENST00000512151 ROCK2O75116 1388 aaKnown RBP13.03□□□□□ -0.32
NUP54-211ENST00000512151 CTCFP49711 727 aaPredicted RBP13.02□□□□□ -0.33
NUP54-211ENST00000512151 SP7Q8TDD2 431 aaPredicted RBP13.02□□□□□ -0.33
NUP54-211ENST00000512151 ATG3Q9NT62 314 aa13.02□□□□□ -0.33
NUP54-211ENST00000512151 ZC3H4Q9UPT8 1303 aaKnown RBP13.02□□□□□ -0.33
NUP54-211ENST00000512151 KDRP35968 1356 aa13.02□□□□□ -0.33
NUP54-211ENST00000512151 LBX1P52954 281 aa13.01□□□□□ -0.33
NUP54-211ENST00000512151 HSP90AB2PQ58FF8 381 aa13.01□□□□□ -0.33
NUP54-211ENST00000512151 TERF2IPQ9NYB0 399 aa13.01□□□□□ -0.33
NUP54-211ENST00000512151 CNTNAP1P78357 1384 aa13.01□□□□□ -0.33
NUP54-211ENST00000512151 TIAM2Q8IVF5 1701 aa13□□□□□ -0.33
NUP54-211ENST00000512151 POTEIP0CG38 1075 aa13□□□□□ -0.33
NUP54-211ENST00000512151 POTEJP0CG39 1038 aa13□□□□□ -0.33
NUP54-211ENST00000512151 TMOD3Q9NYL9 352 aa13□□□□□ -0.33
NUP54-211ENST00000512151 SRP68Q9UHB9 627 aaKnown RBP13□□□□□ -0.33
NUP54-211ENST00000512151 MYH14Q7Z406 1995 aaKnown RBP13□□□□□ -0.33
NUP54-211ENST00000512151 LMNB1P20700 586 aa12.99□□□□□ -0.33
NUP54-211ENST00000512151 CCDC88AQ3V6T2 1871 aa12.99□□□□□ -0.33
NUP54-211ENST00000512151 SMG6Q86US8 1419 aaKnown RBP12.98□□□□□ -0.33
NUP54-211ENST00000512151 RPS6KA4O75676 772 aa12.98□□□□□ -0.33
NUP54-211ENST00000512151 RFC4P35249 363 aa12.98□□□□□ -0.33
NUP54-211ENST00000512151 VEGFBP49765 207 aa12.98□□□□□ -0.33
NUP54-211ENST00000512151 MLLT1Q03111 559 aaPredicted RBP12.98□□□□□ -0.33
NUP54-211ENST00000512151 FKBP8Q14318 412 aa12.98□□□□□ -0.33
NUP54-211ENST00000512151 WBP1LQ9NX94 342 aa12.98□□□□□ -0.33
NUP54-211ENST00000512151 COL5A3P25940 1745 aaPredicted RBP12.98□□□□□ -0.33
NUP54-211ENST00000512151 VIRMAQ69YN4 1812 aaKnown RBP12.98□□□□□ -0.33
NUP54-211ENST00000512151 INSRP06213 1382 aa12.97□□□□□ -0.33
NUP54-211ENST00000512151 HSPA8P11142 646 aaKnown RBP12.97□□□□□ -0.33
NUP54-211ENST00000512151 RGS19P49795 217 aa12.97□□□□□ -0.33
NUP54-211ENST00000512151 RC3H1Q5TC82 1133 aaKnown RBP12.97□□□□□ -0.33
NUP54-211ENST00000512151 CHADLQ6NUI6 762 aa12.97□□□□□ -0.33
NUP54-211ENST00000512151 AIDAQ96BJ3 306 aa12.97□□□□□ -0.33
NUP54-211ENST00000512151 CNTNAP4Q9C0A0 1308 aa12.96□□□□□ -0.33
NUP54-211ENST00000512151 NFKBIEO00221 500 aa12.96□□□□□ -0.33
NUP54-211ENST00000512151 CNKSR2Q8WXI2 1034 aa12.96□□□□□ -0.33
NUP54-211ENST00000512151 NCAPD2Q15021 1401 aa12.96□□□□□ -0.33
NUP54-211ENST00000512151 POLRMTO00411 1230 aaKnown RBP12.95□□□□□ -0.34
NUP54-211ENST00000512151 ZNF831Q5JPB2 1677 aa12.95□□□□□ -0.34
NUP54-211ENST00000512151 RBM42Q9BTD8 480 aaKnown RBP12.94□□□□□ -0.34
NUP54-211ENST00000512151 GGNBP2Q9H3C7 697 aa12.94□□□□□ -0.34
NUP54-211ENST00000512151 PASKQ96RG2 1323 aa12.94□□□□□ -0.34
NUP54-211ENST00000512151 USP42Q9H9J4 1324 aaKnown RBP12.94□□□□□ -0.34
NUP54-211ENST00000512151 CCDC85CA6NKD9 419 aa12.94□□□□□ -0.34
NUP54-211ENST00000512151 FYB1O15117 783 aa12.94□□□□□ -0.34
NUP54-211ENST00000512151 PHKG2P15735 406 aa12.94□□□□□ -0.34
NUP54-211ENST00000512151 SPG7Q9UQ90 795 aa12.94□□□□□ -0.34
NUP54-211ENST00000512151 TM4SF1P30408 202 aa12.93□□□□□ -0.34
NUP54-211ENST00000512151 ADAMTS7Q9UKP4 1686 aa12.92□□□□□ -0.34
NUP54-211ENST00000512151 FLT4P35916 1363 aa12.92□□□□□ -0.34
NUP54-211ENST00000512151 DLEC1Q9Y238 1755 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms