RNA–Protein interactions for RNA: ENST00000511895.1

LINC01088-208, Transcript of long intergenic non-protein coding RNA 1088, human

TSL 2 BASIC

Gene LINC01088, Length 795 nt, Biotype antisense RNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC01088-208	ENST00000511895	CRTC2	Q53ET0	693 aa	Predicted RBP	11.02	□□□□□ -0.65
LINC01088-208	ENST00000511895	PBXIP1	Q96AQ6	731 aa		11.02	□□□□□ -0.65
LINC01088-208	ENST00000511895	SNRPB	P14678	240 aa	Known RBP	11.01	□□□□□ -0.65
LINC01088-208	ENST00000511895	ZNF787	Q6DD87	383 aa		11.01	□□□□□ -0.65
LINC01088-208	ENST00000511895	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	11.01	□□□□□ -0.65
LINC01088-208	ENST00000511895	XAGE2	Q96GT9	111 aa		11.01	□□□□□ -0.65
LINC01088-208	ENST00000511895	FAM196B	A6NMK8	535 aa		11	□□□□□ -0.65
LINC01088-208	ENST00000511895	SOBP	A7XYQ1	873 aa		11	□□□□□ -0.65
LINC01088-208	ENST00000511895	TMEM229A	B2RXF0	380 aa		11	□□□□□ -0.65
LINC01088-208	ENST00000511895	BACH1	O14867	736 aa		11	□□□□□ -0.65
LINC01088-208	ENST00000511895	GTF2E1	P29083	439 aa	Predicted RBP	11	□□□□□ -0.65
LINC01088-208	ENST00000511895	CENPC	Q03188	943 aa		11	□□□□□ -0.65
LINC01088-208	ENST00000511895	TLR1	Q15399	786 aa		11	□□□□□ -0.65
LINC01088-208	ENST00000511895	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11	□□□□□ -0.65
LINC01088-208	ENST00000511895	RNF144A	P50876	292 aa	Predicted RBP	10.99	□□□□□ -0.65
LINC01088-208	ENST00000511895	PTK7	Q13308	1070 aa		10.99	□□□□□ -0.65
LINC01088-208	ENST00000511895	SIX5	Q8N196	739 aa		10.99	□□□□□ -0.65
LINC01088-208	ENST00000511895	RNF217	Q8TC41	542 aa		10.99	□□□□□ -0.65
LINC01088-208	ENST00000511895	ZNF358	Q9NW07	568 aa		10.99	□□□□□ -0.65
LINC01088-208	ENST00000511895	DNMT3L	Q9UJW3	386 aa		10.99	□□□□□ -0.65
LINC01088-208	ENST00000511895	SFI1	A8K8P3	1242 aa		10.98	□□□□□ -0.65
LINC01088-208	ENST00000511895	GPC1	P35052	558 aa		10.98	□□□□□ -0.65
LINC01088-208	ENST00000511895	DPYD	Q12882	1025 aa		10.98	□□□□□ -0.65
LINC01088-208	ENST00000511895	PRICKLE2	Q7Z3G6	844 aa		10.98	□□□□□ -0.65
LINC01088-208	ENST00000511895	ANKMY2	Q8IV38	441 aa		10.98	□□□□□ -0.65
LINC01088-208	ENST00000511895	WASL	O00401	505 aa	Predicted RBP	10.97	□□□□□ -0.65
LINC01088-208	ENST00000511895	SEC13	P55735	322 aa		10.97	□□□□□ -0.65
LINC01088-208	ENST00000511895	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	10.97	□□□□□ -0.65
LINC01088-208	ENST00000511895	TMEM214	Q6NUQ4	689 aa	Known RBP	10.97	□□□□□ -0.65
LINC01088-208	ENST00000511895	LYSMD3	Q7Z3D4	306 aa		10.97	□□□□□ -0.65
LINC01088-208	ENST00000511895	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	10.97	□□□□□ -0.65
LINC01088-208	ENST00000511895	NOVA2	Q9UNW9	492 aa	Known RBP	10.97	□□□□□ -0.65
LINC01088-208	ENST00000511895	SMTN	P53814	917 aa		10.96	□□□□□ -0.65
LINC01088-208	ENST00000511895	SRPK2	P78362	688 aa	Known RBP	10.96	□□□□□ -0.65
LINC01088-208	ENST00000511895	FAM200A	Q8TCP9	573 aa		10.96	□□□□□ -0.65
LINC01088-208	ENST00000511895	ACIN1	Q9UKV3	1341 aa	Known RBP	10.95	□□□□□ -0.66
LINC01088-208	ENST00000511895	PPP1R15A	O75807	674 aa	Predicted RBP	10.95	□□□□□ -0.66
LINC01088-208	ENST00000511895	GRIP2	Q9C0E4	1043 aa		10.95	□□□□□ -0.66
LINC01088-208	ENST00000511895	HRH3	Q9Y5N1	445 aa		10.95	□□□□□ -0.66
LINC01088-208	ENST00000511895	RHOQ	P17081	205 aa		10.94	□□□□□ -0.66
LINC01088-208	ENST00000511895	HINFP	Q9BQA5	517 aa		10.94	□□□□□ -0.66
LINC01088-208	ENST00000511895		A6NJY4	79 aa		10.93	□□□□□ -0.66
LINC01088-208	ENST00000511895	ATG7	O95352	703 aa		10.93	□□□□□ -0.66
LINC01088-208	ENST00000511895	GNAS	Q5JWF2	1037 aa		10.93	□□□□□ -0.66
LINC01088-208	ENST00000511895	TNS4	Q8IZW8	715 aa		10.93	□□□□□ -0.66
LINC01088-208	ENST00000511895	TSEN2	Q8NCE0	465 aa	Known RBP	10.93	□□□□□ -0.66
LINC01088-208	ENST00000511895	SLC4A9	Q96Q91	983 aa		10.93	□□□□□ -0.66
LINC01088-208	ENST00000511895	FHDC1	Q9C0D6	1143 aa	Predicted RBP	10.93	□□□□□ -0.66
LINC01088-208	ENST00000511895	DKK1	O94907	266 aa		10.92	□□□□□ -0.66
LINC01088-208	ENST00000511895	POU4F2	Q12837	409 aa		10.92	□□□□□ -0.66
LINC01088-208	ENST00000511895	ARX	Q96QS3	562 aa		10.91	□□□□□ -0.66
LINC01088-208	ENST00000511895		M0R2N6	131 aa		10.9	□□□□□ -0.66
LINC01088-208	ENST00000511895	PHKA2	P46019	1235 aa		10.9	□□□□□ -0.66
LINC01088-208	ENST00000511895	NBPF10	Q6P3W6	841 aa	Known RBP	10.9	□□□□□ -0.66
LINC01088-208	ENST00000511895	TAS1R3	Q7RTX0	852 aa		10.9	□□□□□ -0.66
LINC01088-208	ENST00000511895	PPARGC1B	Q86YN6	1023 aa	Known RBP	10.9	□□□□□ -0.66
LINC01088-208	ENST00000511895	NBPF15	Q8N660	670 aa		10.9	□□□□□ -0.66
LINC01088-208	ENST00000511895	STK32A	Q8WU08	396 aa		10.9	□□□□□ -0.66
LINC01088-208	ENST00000511895	ZMIZ1	Q9ULJ6	1067 aa		10.9	□□□□□ -0.66
LINC01088-208	ENST00000511895	CDK2AP1	O14519	115 aa		10.89	□□□□□ -0.67
LINC01088-208	ENST00000511895	LGR5	O75473	907 aa		10.89	□□□□□ -0.67
LINC01088-208	ENST00000511895	ELOA	Q14241	798 aa	Known RBP	10.89	□□□□□ -0.67
LINC01088-208	ENST00000511895	MTFR1	Q15390	333 aa		10.89	□□□□□ -0.67
LINC01088-208	ENST00000511895	TBCEL	Q5QJ74	424 aa		10.89	□□□□□ -0.67
LINC01088-208	ENST00000511895	RHBDD1	Q8TEB9	315 aa		10.89	□□□□□ -0.67
LINC01088-208	ENST00000511895	PTS	Q03393	145 aa		10.88	□□□□□ -0.67
LINC01088-208	ENST00000511895	NIFK	Q9BYG3	293 aa	Known RBP	10.88	□□□□□ -0.67
LINC01088-208	ENST00000511895	CABP1	Q9NZU7	370 aa		10.88	□□□□□ -0.67
LINC01088-208	ENST00000511895	SCHIP1	Q9P0W5	487 aa	Predicted RBP	10.88	□□□□□ -0.67
LINC01088-208	ENST00000511895	SPATA31C2	B4DYI2	1134 aa		10.87	□□□□□ -0.67
LINC01088-208	ENST00000511895	CSB-PGBD3	P0DP91	1061 aa		10.87	□□□□□ -0.67
LINC01088-208	ENST00000511895	C4orf17	Q53FE4	359 aa		10.87	□□□□□ -0.67
LINC01088-208	ENST00000511895	SLC9A9	Q8IVB4	645 aa		10.87	□□□□□ -0.67
LINC01088-208	ENST00000511895	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	10.87	□□□□□ -0.67
LINC01088-208	ENST00000511895	TIMMDC1	Q9NPL8	285 aa		10.87	□□□□□ -0.67
LINC01088-208	ENST00000511895	USP3	Q9Y6I4	520 aa		10.87	□□□□□ -0.67
LINC01088-208	ENST00000511895	PLA2G4A	P47712	749 aa		10.86	□□□□□ -0.67
LINC01088-208	ENST00000511895	EPHA4	P54764	986 aa		10.86	□□□□□ -0.67
LINC01088-208	ENST00000511895	TMEM164	Q5U3C3	297 aa		10.86	□□□□□ -0.67
LINC01088-208	ENST00000511895	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.85	□□□□□ -0.67
LINC01088-208	ENST00000511895	CHMP3	Q9Y3E7	222 aa		10.85	□□□□□ -0.67
LINC01088-208	ENST00000511895	FOXK2	Q01167	660 aa		10.84	□□□□□ -0.67
LINC01088-208	ENST00000511895	CHMP7	Q8WUX9	453 aa	Predicted RBP	10.84	□□□□□ -0.67
LINC01088-208	ENST00000511895	SCG3	Q8WXD2	468 aa	Known RBP	10.84	□□□□□ -0.67
LINC01088-208	ENST00000511895	AIDA	Q96BJ3	306 aa		10.84	□□□□□ -0.67
LINC01088-208	ENST00000511895	PPP1R12B	O60237	982 aa	Predicted RBP	10.83	□□□□□ -0.68
LINC01088-208	ENST00000511895	WDR44	Q5JSH3	913 aa		10.83	□□□□□ -0.68
LINC01088-208	ENST00000511895	CCDC155	Q8N6L0	562 aa		10.83	□□□□□ -0.68
LINC01088-208	ENST00000511895	GAS2L1	Q99501	681 aa	Predicted RBP	10.83	□□□□□ -0.68
LINC01088-208	ENST00000511895	ZNF232	Q9UNY5	417 aa		10.83	□□□□□ -0.68
LINC01088-208	ENST00000511895	PARP3	Q9Y6F1	533 aa		10.83	□□□□□ -0.68
LINC01088-208	ENST00000511895	ATAD2	Q6PL18	1390 aa		10.82	□□□□□ -0.68
LINC01088-208	ENST00000511895	SWI5	Q1ZZU3	235 aa		10.82	□□□□□ -0.68
LINC01088-208	ENST00000511895	SLC35F4	A4IF30	521 aa		10.81	□□□□□ -0.68
LINC01088-208	ENST00000511895	PSMA6	P60900	246 aa	Known RBP	10.81	□□□□□ -0.68
LINC01088-208	ENST00000511895	RIPOR1	Q6ZS17	1223 aa		10.81	□□□□□ -0.68
LINC01088-208	ENST00000511895	NXF1	Q9UBU9	619 aa	Known RBP	10.81	□□□□□ -0.68
LINC01088-208	ENST00000511895	DYRK1B	Q9Y463	629 aa		10.81	□□□□□ -0.68
LINC01088-208	ENST00000511895	SENP3-EIF4A1	A0A087X0R7	540 aa		10.8	□□□□□ -0.68
LINC01088-208	ENST00000511895		A0A1B0GTH6	734 aa		10.8	□□□□□ -0.68

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