RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 SMIM5Q71RC9 77 aa24.29■■□□□ 1.48
TPM3-220ENST00000509601 FLAD1Q8NFF5 587 aa24.29■■□□□ 1.48
TPM3-220ENST00000509601 SLC4A9Q96Q91 983 aa24.29■■□□□ 1.48
TPM3-220ENST00000509601 CABP4P57796 275 aa24.28■■□□□ 1.48
TPM3-220ENST00000509601 C1orf141Q5JVX7 400 aa24.28■■□□□ 1.48
TPM3-220ENST00000509601 MAP3K5Q99683 1374 aa24.27■■□□□ 1.48
TPM3-220ENST00000509601 DCAF8L1A6NGE4 600 aa24.26■■□□□ 1.47
TPM3-220ENST00000509601 NFATC2IPQ8NCF5 419 aa24.26■■□□□ 1.47
TPM3-220ENST00000509601 AK7Q96M32 723 aa24.26■■□□□ 1.47
TPM3-220ENST00000509601 C4BP0C0L5 1744 aa24.26■■□□□ 1.47
TPM3-220ENST00000509601 AKAP4Q5JQC9 854 aa24.24■■□□□ 1.47
TPM3-220ENST00000509601 MSL1Q68DK7 614 aa24.24■■□□□ 1.47
TPM3-220ENST00000509601 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.23■■□□□ 1.47
TPM3-220ENST00000509601 MTHFSDQ2M296 383 aaKnown RBP24.23■■□□□ 1.47
TPM3-220ENST00000509601 RBM42Q9BTD8 480 aaKnown RBP24.23■■□□□ 1.47
TPM3-220ENST00000509601 LGR6Q9HBX8 967 aa24.23■■□□□ 1.47
TPM3-220ENST00000509601 COL3A1P02461 1466 aaPredicted RBP24.22■■□□□ 1.47
TPM3-220ENST00000509601 PHF14O94880 888 aa24.21■■□□□ 1.47
TPM3-220ENST00000509601 SSFA2P28290 1259 aa24.21■■□□□ 1.47
TPM3-220ENST00000509601 UBR3Q6ZT12 1888 aa24.2■■□□□ 1.46
TPM3-220ENST00000509601 GNPATO15228 680 aa24.18■■□□□ 1.46
TPM3-220ENST00000509601 RNMTO43148 476 aaKnown RBP24.18■■□□□ 1.46
TPM3-220ENST00000509601 RC3H1Q5TC82 1133 aaKnown RBP24.18■■□□□ 1.46
TPM3-220ENST00000509601 KLHL34Q8N239 644 aa24.18■■□□□ 1.46
TPM3-220ENST00000509601 U2SURPO15042 1029 aaKnown RBP24.17■■□□□ 1.46
TPM3-220ENST00000509601 YY1P25490 414 aa24.17■■□□□ 1.46
TPM3-220ENST00000509601 NLGN2Q8NFZ4 835 aa24.17■■□□□ 1.46
TPM3-220ENST00000509601 SLC52A2Q9HAB3 445 aa24.17■■□□□ 1.46
TPM3-220ENST00000509601 PTCD1O75127 700 aaKnown RBP24.16■■□□□ 1.46
TPM3-220ENST00000509601 PPP2R1AP30153 589 aa24.16■■□□□ 1.46
TPM3-220ENST00000509601 SCN11AQ9UI33 1791 aa24.15■■□□□ 1.46
TPM3-220ENST00000509601 ZNF831Q5JPB2 1677 aa24.14■■□□□ 1.45
TPM3-220ENST00000509601 TRAPPC3LQ5T215 181 aa24.13■■□□□ 1.45
TPM3-220ENST00000509601 RTCBQ9Y3I0 505 aaKnown RBP24.13■■□□□ 1.45
TPM3-220ENST00000509601 GOLGB1Q14789 3259 aaKnown RBP24.13■■□□□ 1.45
TPM3-220ENST00000509601 CNTNAP4Q9C0A0 1308 aa24.12■■□□□ 1.45
TPM3-220ENST00000509601 RPS6KA4O75676 772 aa24.12■■□□□ 1.45
TPM3-220ENST00000509601 ARHGEF1Q92888 912 aaKnown RBP24.12■■□□□ 1.45
TPM3-220ENST00000509601 CFAP53Q96M91 514 aa24.11■■□□□ 1.45
TPM3-220ENST00000509601 MYH14Q7Z406 1995 aaKnown RBP24.11■■□□□ 1.45
TPM3-220ENST00000509601 SLC39A6Q13433 755 aa24.1■■□□□ 1.45
TPM3-220ENST00000509601 GPR162Q16538 588 aa24.1■■□□□ 1.45
TPM3-220ENST00000509601 IL17REQ8NFR9 667 aa24.1■■□□□ 1.45
TPM3-220ENST00000509601 PHACTR3Q96KR7 559 aa24.1■■□□□ 1.45
TPM3-220ENST00000509601 CD2APQ9Y5K6 639 aa24.1■■□□□ 1.45
TPM3-220ENST00000509601 RSPH6AQ9H0K4 717 aa24.09■■□□□ 1.45
TPM3-220ENST00000509601 CRKLP46109 303 aaKnown RBP24.08■■□□□ 1.45
TPM3-220ENST00000509601 COL5A3P25940 1745 aaPredicted RBP24.07■■□□□ 1.44
TPM3-220ENST00000509601 ADRA2BP18089 450 aa24.07■■□□□ 1.44
TPM3-220ENST00000509601 INTS5Q6P9B9 1019 aaKnown RBP24.07■■□□□ 1.44
TPM3-220ENST00000509601 GAS2L2Q8NHY3 880 aa24.07■■□□□ 1.44
TPM3-220ENST00000509601 NUDCQ9Y266 331 aa24.07■■□□□ 1.44
TPM3-220ENST00000509601 ADAMTS7Q9UKP4 1686 aa24.07■■□□□ 1.44
TPM3-220ENST00000509601 MRC1P22897 1456 aa24.07■■□□□ 1.44
TPM3-220ENST00000509601 GNAT3A8MTJ3 354 aa24.06■■□□□ 1.44
TPM3-220ENST00000509601 PRKAR2BP31323 418 aa24.06■■□□□ 1.44
TPM3-220ENST00000509601 DNAJC10Q8IXB1 793 aa24.06■■□□□ 1.44
TPM3-220ENST00000509601 NLGN1Q8N2Q7 840 aa24.04■■□□□ 1.44
TPM3-220ENST00000509601 VIRMAQ69YN4 1812 aaKnown RBP24.04■■□□□ 1.44
TPM3-220ENST00000509601 MMP10P09238 476 aa24.03■■□□□ 1.44
TPM3-220ENST00000509601 U2AF1L5P0DN76 240 aaPredicted RBP24.03■■□□□ 1.44
TPM3-220ENST00000509601 GYS1P13807 737 aa24.03■■□□□ 1.44
TPM3-220ENST00000509601 YBX3P16989 372 aaKnown RBP eCLIP24.03■■□□□ 1.44
TPM3-220ENST00000509601 RFC4P35249 363 aa24.03■■□□□ 1.44
TPM3-220ENST00000509601 U2AF1Q01081 240 aaKnown RBP eCLIP24.03■■□□□ 1.447e-10■■□□□ 13
TPM3-220ENST00000509601 PELP1Q8IZL8 1130 aaKnown RBP24.03■■□□□ 1.44
TPM3-220ENST00000509601 FCHSD2O94868 740 aa24.02■■□□□ 1.44
TPM3-220ENST00000509601 CYP19A1P11511 503 aaPredicted RBP24.02■■□□□ 1.44
TPM3-220ENST00000509601 TJP1Q07157 1748 aa24.01■■□□□ 1.43
TPM3-220ENST00000509601 VSIG10Q8N0Z9 540 aa24■■□□□ 1.43
TPM3-220ENST00000509601 KCPQ6ZWJ8 1503 aa24■■□□□ 1.43
TPM3-220ENST00000509601 CCDC87Q9NVE4 849 aa23.99■■□□□ 1.43
TPM3-220ENST00000509601 SRP68Q9UHB9 627 aaKnown RBP23.99■■□□□ 1.43
TPM3-220ENST00000509601 CICQ96RK0 1608 aaPredicted RBP23.99■■□□□ 1.43
TPM3-220ENST00000509601 CHD4Q14839 1912 aa23.98■■□□□ 1.43
TPM3-220ENST00000509601 TEFQ10587 303 aa23.98■■□□□ 1.43
TPM3-220ENST00000509601 CEMIPQ8WUJ3 1361 aa23.98■■□□□ 1.43
TPM3-220ENST00000509601 GRIN3BO60391 1043 aa23.97■■□□□ 1.43
TPM3-220ENST00000509601 ZNF790Q6PG37 636 aa23.97■■□□□ 1.43
TPM3-220ENST00000509601 ZNF496Q96IT1 587 aaPredicted RBP23.96■■□□□ 1.43
TPM3-220ENST00000509601 SOS1Q07889 1333 aaPredicted RBP23.95■■□□□ 1.42
TPM3-220ENST00000509601 USP42Q9H9J4 1324 aaKnown RBP23.95■■□□□ 1.42
TPM3-220ENST00000509601 FKBP8Q14318 412 aa23.95■■□□□ 1.42
TPM3-220ENST00000509601 TTC5Q8N0Z6 440 aa23.95■■□□□ 1.42
TPM3-220ENST00000509601 ZNF784Q8NCA9 323 aaPredicted RBP23.95■■□□□ 1.42
TPM3-220ENST00000509601 KCNQ3O43525 872 aa23.94■■□□□ 1.42
TPM3-220ENST00000509601 ZBTB1Q9Y2K1 713 aa23.94■■□□□ 1.42
TPM3-220ENST00000509601 DDX10Q13206 875 aaKnown RBP23.93■■□□□ 1.42
TPM3-220ENST00000509601 TM4SF1P30408 202 aa23.92■■□□□ 1.42
TPM3-220ENST00000509601 PARP3Q9Y6F1 533 aa23.92■■□□□ 1.42
TPM3-220ENST00000509601 C4AP0C0L4 1744 aa23.92■■□□□ 1.42
TPM3-220ENST00000509601 UBR2Q8IWV8 1755 aa23.91■■□□□ 1.42
TPM3-220ENST00000509601 MCM10Q7L590 875 aa23.91■■□□□ 1.42
TPM3-220ENST00000509601 SIPA1L3O60292 1781 aaPredicted RBP23.91■■□□□ 1.42
TPM3-220ENST00000509601 HEG1Q9ULI3 1381 aa23.91■■□□□ 1.42
TPM3-220ENST00000509601 BTBD11A6QL63 1104 aa23.9■■□□□ 1.42
TPM3-220ENST00000509601 HTATSF1O43719 755 aaKnown RBP23.9■■□□□ 1.42
TPM3-220ENST00000509601 STARD3NLO95772 234 aa23.9■■□□□ 1.42
TPM3-220ENST00000509601 TGFB2P61812 414 aa23.9■■□□□ 1.42
TPM3-220ENST00000509601 DDR1Q08345 913 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms