RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 PCDHB13Q9Y5F0 798 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 CLTCQ00610 1675 aaKnown RBP4.83□□□□□ -1.64
NEDD4-209ENST00000508871 SPATA31E1Q6ZUB1 1445 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 PRAG1Q86YV5 1406 aa4.83□□□□□ -1.64
NEDD4-209ENST00000508871 RBM33Q96EV2 1170 aaKnown RBP4.83□□□□□ -1.64
NEDD4-209ENST00000508871 USP32Q8NFA0 1604 aa4.82□□□□□ -1.64
NEDD4-209ENST00000508871 SPATA31D1Q6ZQQ2 1576 aa4.82□□□□□ -1.64
NEDD4-209ENST00000508871 HIC1Q14526 733 aa4.82□□□□□ -1.64
NEDD4-209ENST00000508871 WASHC4Q2M389 1173 aa4.82□□□□□ -1.64
NEDD4-209ENST00000508871 DIEXFQ68CQ4 756 aaKnown RBP4.82□□□□□ -1.64
NEDD4-209ENST00000508871 MKNK1Q9BUB5 465 aa4.82□□□□□ -1.64
NEDD4-209ENST00000508871 MAP4K4O95819 1239 aaPredicted RBP4.82□□□□□ -1.64
NEDD4-209ENST00000508871 IFIT2P09913 472 aaKnown RBP4.82□□□□□ -1.64
NEDD4-209ENST00000508871 DEKP35659 375 aaKnown RBP4.82□□□□□ -1.64
NEDD4-209ENST00000508871 PLA2R1Q13018 1463 aa4.82□□□□□ -1.64
NEDD4-209ENST00000508871 ROCK2O75116 1388 aaKnown RBP4.82□□□□□ -1.64
NEDD4-209ENST00000508871 IRF6O14896 467 aa4.82□□□□□ -1.64
NEDD4-209ENST00000508871 CC2D1AQ6P1N0 951 aaPredicted RBP4.82□□□□□ -1.64
NEDD4-209ENST00000508871 FOSP01100 380 aaPredicted RBP4.81□□□□□ -1.64
NEDD4-209ENST00000508871 ATF3P18847 181 aa4.81□□□□□ -1.64
NEDD4-209ENST00000508871 WWC2Q6AWC2 1192 aa4.81□□□□□ -1.64
NEDD4-209ENST00000508871 ZNF16P17020 682 aaPredicted RBP4.81□□□□□ -1.64
NEDD4-209ENST00000508871 RDH13Q8NBN7 331 aa4.81□□□□□ -1.64
NEDD4-209ENST00000508871 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.81□□□□□ -1.647e-8■■■■■ 186.3
NEDD4-209ENST00000508871 HDAC9Q9UKV0 1011 aa4.81□□□□□ -1.64
NEDD4-209ENST00000508871 RIMS1Q86UR5 1692 aaKnown RBP4.81□□□□□ -1.64
NEDD4-209ENST00000508871 TMEM131LA2VDJ0 1609 aa4.81□□□□□ -1.64
NEDD4-209ENST00000508871 SIRT1Q96EB6 747 aa4.81□□□□□ -1.64
NEDD4-209ENST00000508871 ZNF594Q96JF6 807 aaPredicted RBP4.81□□□□□ -1.64
NEDD4-209ENST00000508871 DNAJC6O75061 913 aa4.81□□□□□ -1.64
NEDD4-209ENST00000508871 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.81□□□□□ -1.64
NEDD4-209ENST00000508871 NOS1P29475 1434 aa4.81□□□□□ -1.64
NEDD4-209ENST00000508871 POM121CA8CG34 1229 aa4.81□□□□□ -1.64
NEDD4-209ENST00000508871 PRC1O43663 620 aa4.81□□□□□ -1.64
NEDD4-209ENST00000508871 POLD1P28340 1107 aa4.81□□□□□ -1.64
NEDD4-209ENST00000508871 ANP32AP39687 249 aaKnown RBP4.81□□□□□ -1.64
NEDD4-209ENST00000508871 EIF4G2P78344 907 aaKnown RBP eCLIP4.81□□□□□ -1.64
NEDD4-209ENST00000508871 ZNF354CQ86Y25 554 aa4.81□□□□□ -1.64
NEDD4-209ENST00000508871 MAFGO15525 162 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 SKIP12755 728 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 ANO1Q5XXA6 986 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 ARMCX6Q7L4S7 300 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 SETD1AO15047 1707 aaKnown RBP4.8□□□□□ -1.64
NEDD4-209ENST00000508871 PAX3P23760 479 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 SSR1P43307 286 aaKnown RBP4.8□□□□□ -1.64
NEDD4-209ENST00000508871 TFIP11Q9UBB9 837 aaKnown RBP4.8□□□□□ -1.64
NEDD4-209ENST00000508871 COMMD10Q9Y6G5 202 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 MYOM1P52179 1685 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 ZFYVE9O95405 1425 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 LIG1P18858 919 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 RASA1P20936 1047 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 IFRD2Q12894 506 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-209ENST00000508871 SRPK1Q96SB4 655 aaKnown RBP4.8□□□□□ -1.64
NEDD4-209ENST00000508871 KTN1Q86UP2 1357 aaKnown RBP4.8□□□□□ -1.64
NEDD4-209ENST00000508871 ZNF142P52746 1687 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-209ENST00000508871 QRICH2Q9H0J4 1663 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 SH3BGRP55822 239 aaPredicted RBP4.8□□□□□ -1.64
NEDD4-209ENST00000508871 ARID5AQ03989 594 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 SH3D19Q5HYK7 790 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 CXorf38Q8TB03 319 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.8□□□□□ -1.642e-6■■■□□ 17.3
NEDD4-209ENST00000508871 GPCPD1Q9NPB8 672 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 NEXMIFQ5QGS0 1516 aa4.8□□□□□ -1.64
NEDD4-209ENST00000508871 ARHGEF28Q8N1W1 1705 aaKnown RBP4.8□□□□□ -1.64
NEDD4-209ENST00000508871 SERPINB4P48594 390 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 SLC4A3P48751 1232 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 TERF1P54274 439 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 KIAA2012Q0VF49 1180 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 FER1L4A9Z1Z3 1794 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 VPS37AQ8NEZ2 397 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 KCNH8Q96L42 1107 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 SIN3AQ96ST3 1273 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 MYO5BQ9ULV0 1848 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 RNF40O75150 1001 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 NT5DC4Q86YG4 428 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 PPCSQ9HAB8 311 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 CHPF2Q9P2E5 772 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 PHF8Q9UPP1 1060 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 RABGAP1Q9Y3P9 1069 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 RPGRIP1LQ68CZ1 1315 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 LCA5Q86VQ0 697 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 RPS6KC1Q96S38 1066 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 UBA5Q9GZZ9 404 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 SPDYE16A6NNV3 312 aaPredicted RBP4.79□□□□□ -1.64
NEDD4-209ENST00000508871 RFC5P40937 340 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 ZNF211Q13398 564 aaPredicted RBP4.79□□□□□ -1.64
NEDD4-209ENST00000508871 ODR4Q5SWX8 454 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 IPO9Q96P70 1041 aaKnown RBP4.79□□□□□ -1.64
NEDD4-209ENST00000508871 ANKRD26Q9UPS8 1709 aa4.79□□□□□ -1.64
NEDD4-209ENST00000508871 PPP1R15BQ5SWA1 713 aa4.78□□□□□ -1.64
NEDD4-209ENST00000508871 DEPDC4Q8N2C3 294 aa4.78□□□□□ -1.64
NEDD4-209ENST00000508871 ATL2Q8NHH9 583 aa4.78□□□□□ -1.64
NEDD4-209ENST00000508871 DIP2AQ14689 1571 aa4.78□□□□□ -1.64
NEDD4-209ENST00000508871 COL17A1Q9UMD9 1497 aaPredicted RBP4.78□□□□□ -1.64
NEDD4-209ENST00000508871 CCND1P24385 295 aa4.78□□□□□ -1.64
NEDD4-209ENST00000508871 GRM1Q13255 1194 aa4.78□□□□□ -1.64
NEDD4-209ENST00000508871 SOGA3Q5TF21 947 aa4.78□□□□□ -1.64
NEDD4-209ENST00000508871 FMNL3Q8IVF7 1028 aa4.78□□□□□ -1.64
NEDD4-209ENST00000508871 ACRBPQ8NEB7 543 aa4.78□□□□□ -1.64
NEDD4-209ENST00000508871 FAM200AQ8TCP9 573 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 246.3 ms