RNA–Protein interactions for RNA: ENST00000508800.1

NEDD9-212, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 834 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-212ENST00000508800 C4AP0C0L4 1744 aa15.97■□□□□ 0.15
NEDD9-212ENST00000508800 PUS7Q96PZ0 661 aaKnown RBP15.96■□□□□ 0.15
NEDD9-212ENST00000508800 PCDH10Q9P2E7 1040 aa15.96■□□□□ 0.15
NEDD9-212ENST00000508800 LINC00116Q8NCU8 138 aa15.95■□□□□ 0.14
NEDD9-212ENST00000508800 SLC12A5Q9H2X9 1139 aa15.95■□□□□ 0.14
NEDD9-212ENST00000508800 DPEP1P16444 411 aa15.94■□□□□ 0.14
NEDD9-212ENST00000508800 TMF1P82094 1093 aa15.94■□□□□ 0.14
NEDD9-212ENST00000508800 PIGBQ92521 554 aa15.94■□□□□ 0.14
NEDD9-212ENST00000508800 L3MBTL2Q969R5 705 aa15.94■□□□□ 0.14
NEDD9-212ENST00000508800 RRAGCQ9HB90 399 aa15.94■□□□□ 0.14
NEDD9-212ENST00000508800 RNF181Q9P0P0 153 aa15.94■□□□□ 0.14
NEDD9-212ENST00000508800 PIM2Q9P1W9 311 aa15.94■□□□□ 0.14
NEDD9-212ENST00000508800 CYP27B1O15528 508 aa15.93■□□□□ 0.14
NEDD9-212ENST00000508800 ADRA2BP18089 450 aa15.93■□□□□ 0.14
NEDD9-212ENST00000508800 DCAF5Q96JK2 942 aa15.93■□□□□ 0.14
NEDD9-212ENST00000508800 ZNF831Q5JPB2 1677 aa15.92■□□□□ 0.14
NEDD9-212ENST00000508800 SMIM5Q71RC9 77 aa15.92■□□□□ 0.14
NEDD9-212ENST00000508800 USHBP1Q8N6Y0 703 aa15.92■□□□□ 0.14
NEDD9-212ENST00000508800 PARP3Q9Y6F1 533 aa15.92■□□□□ 0.14
NEDD9-212ENST00000508800 INSRP06213 1382 aa15.91■□□□□ 0.14
NEDD9-212ENST00000508800 KIF24Q5T7B8 1368 aa15.91■□□□□ 0.14
NEDD9-212ENST00000508800 NKX1-1Q15270 411 aaPredicted RBP15.91■□□□□ 0.14
NEDD9-212ENST00000508800 DALRD3Q5D0E6 543 aaKnown RBP15.91■□□□□ 0.14
NEDD9-212ENST00000508800 TRAPPC3LQ5T215 181 aa15.91■□□□□ 0.14
NEDD9-212ENST00000508800 RTCBQ9Y3I0 505 aaKnown RBP15.91■□□□□ 0.14
NEDD9-212ENST00000508800 VEGFAP15692 232 aaPredicted RBP15.9■□□□□ 0.14
NEDD9-212ENST00000508800 ATP6V1AP38606 617 aa15.9■□□□□ 0.14
NEDD9-212ENST00000508800 TMOD3Q9NYL9 352 aa15.89■□□□□ 0.13
NEDD9-212ENST00000508800 KCNA3P22001 575 aa15.88■□□□□ 0.13
NEDD9-212ENST00000508800 ITPK1Q13572 414 aa15.88■□□□□ 0.13
NEDD9-212ENST00000508800 FLT4P35916 1363 aa15.87■□□□□ 0.13
NEDD9-212ENST00000508800 KDM6AO15550 1401 aaPredicted RBP15.87■□□□□ 0.13
NEDD9-212ENST00000508800 GYS1P13807 737 aa15.87■□□□□ 0.13
NEDD9-212ENST00000508800 RC3H1Q5TC82 1133 aaKnown RBP15.87■□□□□ 0.13
NEDD9-212ENST00000508800 PRDM10Q9NQV6 1147 aa15.87■□□□□ 0.13
NEDD9-212ENST00000508800 SPG7Q9UQ90 795 aa15.87■□□□□ 0.13
NEDD9-212ENST00000508800 COL5A3P25940 1745 aaPredicted RBP15.86■□□□□ 0.13
NEDD9-212ENST00000508800 RFC4P35249 363 aa15.86■□□□□ 0.13
NEDD9-212ENST00000508800 RRS1Q15050 365 aaKnown RBP15.86■□□□□ 0.13
NEDD9-212ENST00000508800 NCAPD2Q15021 1401 aa15.85■□□□□ 0.13
NEDD9-212ENST00000508800 GLTPD2A6NH11 291 aa15.85■□□□□ 0.13
NEDD9-212ENST00000508800 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.85■□□□□ 0.13
NEDD9-212ENST00000508800 ASAP1Q9ULH1 1129 aa15.85■□□□□ 0.13
NEDD9-212ENST00000508800 KDRP35968 1356 aa15.85■□□□□ 0.13
NEDD9-212ENST00000508800 SLC24A1O60721 1099 aa15.84■□□□□ 0.13
NEDD9-212ENST00000508800 FBLN1P23142 703 aa15.84■□□□□ 0.13
NEDD9-212ENST00000508800 ARHGEF1Q92888 912 aaKnown RBP15.84■□□□□ 0.13
NEDD9-212ENST00000508800 CNTNAP4Q9C0A0 1308 aa15.84■□□□□ 0.13
NEDD9-212ENST00000508800 TIAM2Q8IVF5 1701 aa15.83■□□□□ 0.13
NEDD9-212ENST00000508800 LMNB1P20700 586 aa15.83■□□□□ 0.12
NEDD9-212ENST00000508800 CARD11Q9BXL7 1154 aa15.83■□□□□ 0.12
NEDD9-212ENST00000508800 CREBZFQ9NS37 354 aa15.83■□□□□ 0.12
NEDD9-212ENST00000508800 RPS6KA4O75676 772 aa15.82■□□□□ 0.12
NEDD9-212ENST00000508800 HSP90AB2PQ58FF8 381 aa15.82■□□□□ 0.12
NEDD9-212ENST00000508800 MYH14Q7Z406 1995 aaKnown RBP15.81■□□□□ 0.12
NEDD9-212ENST00000508800 CCDC88AQ3V6T2 1871 aa15.8■□□□□ 0.12
NEDD9-212ENST00000508800 TONSLQ96HA7 1378 aa15.8■□□□□ 0.12
NEDD9-212ENST00000508800 CTCFP49711 727 aaPredicted RBP15.8■□□□□ 0.12
NEDD9-212ENST00000508800 IFNL2Q8IZJ0 200 aa15.8■□□□□ 0.12
NEDD9-212ENST00000508800 AIDAQ96BJ3 306 aa15.8■□□□□ 0.12
NEDD9-212ENST00000508800 ATG3Q9NT62 314 aa15.8■□□□□ 0.12
NEDD9-212ENST00000508800 KIF20BQ96Q89 1820 aa15.8■□□□□ 0.12
NEDD9-212ENST00000508800 FOXN1O15353 648 aa15.79■□□□□ 0.12
NEDD9-212ENST00000508800 PDE4DIPQ5VU43 2346 aa15.78■□□□□ 0.12
NEDD9-212ENST00000508800 DLEC1Q9Y238 1755 aa15.78■□□□□ 0.12
NEDD9-212ENST00000508800 FYB1O15117 783 aa15.78■□□□□ 0.12
NEDD9-212ENST00000508800 DPY19L2Q6NUT2 758 aa15.78■□□□□ 0.12
NEDD9-212ENST00000508800 PHKG2P15735 406 aa15.77■□□□□ 0.12
NEDD9-212ENST00000508800 ANKRD26Q9UPS8 1709 aa15.77■□□□□ 0.11
NEDD9-212ENST00000508800 CNTNAP1P78357 1384 aa15.76■□□□□ 0.11
NEDD9-212ENST00000508800 DICER1Q9UPY3 1922 aaKnown RBP15.76■□□□□ 0.11
NEDD9-212ENST00000508800 ERVV-2B6SEH9 535 aa15.76■□□□□ 0.11
NEDD9-212ENST00000508800 CHRNA5P30532 468 aa15.76■□□□□ 0.11
NEDD9-212ENST00000508800 RASSF7Q02833 373 aa15.76■□□□□ 0.11
NEDD9-212ENST00000508800 FAM161AQ3B820 660 aa15.76■□□□□ 0.11
NEDD9-212ENST00000508800 RBM42Q9BTD8 480 aaKnown RBP15.76■□□□□ 0.11
NEDD9-212ENST00000508800 GGNBP2Q9H3C7 697 aa15.76■□□□□ 0.11
NEDD9-212ENST00000508800 MKRN1Q9UHC7 482 aaKnown RBP15.76■□□□□ 0.11
NEDD9-212ENST00000508800 USP42Q9H9J4 1324 aaKnown RBP15.75■□□□□ 0.11
NEDD9-212ENST00000508800 CHADLQ6NUI6 762 aa15.75■□□□□ 0.11
NEDD9-212ENST00000508800 DDR1Q08345 913 aa15.74■□□□□ 0.11
NEDD9-212ENST00000508800 SLC4A9Q96Q91 983 aa15.74■□□□□ 0.11
NEDD9-212ENST00000508800 HSP90AB1P08238 724 aaKnown RBP15.73■□□□□ 0.11
NEDD9-212ENST00000508800 FKBP8Q14318 412 aa15.73■□□□□ 0.11
NEDD9-212ENST00000508800 VIRMAQ69YN4 1812 aaKnown RBP15.73■□□□□ 0.11
NEDD9-212ENST00000508800 NRXN2Q9P2S2 1712 aa15.72■□□□□ 0.11
NEDD9-212ENST00000508800 POLRMTO00411 1230 aaKnown RBP15.72■□□□□ 0.11
NEDD9-212ENST00000508800 MLLT1Q03111 559 aaPredicted RBP15.72■□□□□ 0.11
NEDD9-212ENST00000508800 ABHD8Q96I13 439 aa15.72■□□□□ 0.11
NEDD9-212ENST00000508800 AFDNP55196 1824 aaKnown RBP15.72■□□□□ 0.11
NEDD9-212ENST00000508800 POTECB2RU33 542 aa15.71■□□□□ 0.11
NEDD9-212ENST00000508800 CRKLP46109 303 aaKnown RBP15.71■□□□□ 0.11
NEDD9-212ENST00000508800 TTLL6Q8N841 843 aa15.71■□□□□ 0.11
NEDD9-212ENST00000508800 TESK2Q96S53 571 aa15.71■□□□□ 0.11
NEDD9-212ENST00000508800 TM4SF1P30408 202 aa15.7■□□□□ 0.1
NEDD9-212ENST00000508800 SIN3AQ96ST3 1273 aa15.7■□□□□ 0.1
NEDD9-212ENST00000508800 WBP1LQ9NX94 342 aa15.7■□□□□ 0.1
NEDD9-212ENST00000508800 SRP68Q9UHB9 627 aaKnown RBP15.7■□□□□ 0.1
NEDD9-212ENST00000508800 WASHC2AQ641Q2 1341 aa15.69■□□□□ 0.1
NEDD9-212ENST00000508800 EYA1Q99502 592 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms