RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 IL13P35225 146 aa17.75■□□□□ 0.43
HMGCS1-205ENST00000508319 ITPK1Q13572 414 aa17.75■□□□□ 0.43
HMGCS1-205ENST00000508319 PLEKHO1Q53GL0 409 aaPredicted RBP17.75■□□□□ 0.43
HMGCS1-205ENST00000508319 ZNF530Q6P9A1 599 aaPredicted RBP17.75■□□□□ 0.43
HMGCS1-205ENST00000508319 DCAF5Q96JK2 942 aa17.75■□□□□ 0.43
HMGCS1-205ENST00000508319 ATG3Q9NT62 314 aa17.75■□□□□ 0.43
HMGCS1-205ENST00000508319 ERVV-2B6SEH9 535 aa17.74■□□□□ 0.43
HMGCS1-205ENST00000508319 HSP90AB1P08238 724 aaKnown RBP17.74■□□□□ 0.43
HMGCS1-205ENST00000508319 AMOTQ4VCS5 1084 aa17.74■□□□□ 0.43
HMGCS1-205ENST00000508319 SMIM5Q71RC9 77 aa17.74■□□□□ 0.43
HMGCS1-205ENST00000508319 SCN11AQ9UI33 1791 aa17.74■□□□□ 0.43
HMGCS1-205ENST00000508319 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.73■□□□□ 0.43
HMGCS1-205ENST00000508319 PHF14O94880 888 aa17.73■□□□□ 0.43
HMGCS1-205ENST00000508319 SSFA2P28290 1259 aa17.73■□□□□ 0.43
HMGCS1-205ENST00000508319 ATP6V1AP38606 617 aa17.73■□□□□ 0.43
HMGCS1-205ENST00000508319 SULT6B1Q6IMI4 303 aa17.73■□□□□ 0.43
HMGCS1-205ENST00000508319 GPR162Q16538 588 aa17.72■□□□□ 0.43
HMGCS1-205ENST00000508319 VIRMAQ69YN4 1812 aaKnown RBP17.71■□□□□ 0.43
HMGCS1-205ENST00000508319 GNPATO15228 680 aa17.71■□□□□ 0.43
HMGCS1-205ENST00000508319 SLC4A9Q96Q91 983 aa17.71■□□□□ 0.43
HMGCS1-205ENST00000508319 CICQ96RK0 1608 aaPredicted RBP17.71■□□□□ 0.43
HMGCS1-205ENST00000508319 ZNF784Q8NCA9 323 aaPredicted RBP17.7■□□□□ 0.42
HMGCS1-205ENST00000508319 MTHFSP49914 203 aa17.69■□□□□ 0.42
HMGCS1-205ENST00000508319 C1orf141Q5JVX7 400 aa17.69■□□□□ 0.42
HMGCS1-205ENST00000508319 CC2D1BQ5T0F9 858 aaKnown RBP17.69■□□□□ 0.42
HMGCS1-205ENST00000508319 MYH14Q7Z406 1995 aaKnown RBP17.69■□□□□ 0.42
HMGCS1-205ENST00000508319 TJP1Q07157 1748 aa17.69■□□□□ 0.42
HMGCS1-205ENST00000508319 COL3A1P02461 1466 aaPredicted RBP17.69■□□□□ 0.42
HMGCS1-205ENST00000508319 NPC1L1Q9UHC9 1359 aa17.68■□□□□ 0.42
HMGCS1-205ENST00000508319 C4AP0C0L4 1744 aa17.68■□□□□ 0.42
HMGCS1-205ENST00000508319 CABP4P57796 275 aa17.68■□□□□ 0.42
HMGCS1-205ENST00000508319 PELP1Q8IZL8 1130 aaKnown RBP17.68■□□□□ 0.42
HMGCS1-205ENST00000508319 MRC1P22897 1456 aa17.68■□□□□ 0.42
HMGCS1-205ENST00000508319 ADAMTS7Q9UKP4 1686 aa17.67■□□□□ 0.42
HMGCS1-205ENST00000508319 YBX3P16989 372 aaKnown RBP eCLIP17.67■□□□□ 0.42
HMGCS1-205ENST00000508319 RBM42Q9BTD8 480 aaKnown RBP17.67■□□□□ 0.42
HMGCS1-205ENST00000508319 CD2APQ9Y5K6 639 aa17.67■□□□□ 0.42
HMGCS1-205ENST00000508319 CNTNAP4Q9C0A0 1308 aa17.66■□□□□ 0.42
HMGCS1-205ENST00000508319 KIF13BQ9NQT8 1826 aa17.64■□□□□ 0.41
HMGCS1-205ENST00000508319 HMOX1P09601 288 aa17.64■□□□□ 0.41
HMGCS1-205ENST00000508319 AKAP4Q5JQC9 854 aa17.64■□□□□ 0.41
HMGCS1-205ENST00000508319 NFATC2IPQ8NCF5 419 aa17.64■□□□□ 0.41
HMGCS1-205ENST00000508319 DIAPH1O60610 1272 aaKnown RBP17.63■□□□□ 0.41
HMGCS1-205ENST00000508319 RC3H1Q5TC82 1133 aaKnown RBP17.63■□□□□ 0.41
HMGCS1-205ENST00000508319 RTCBQ9Y3I0 505 aaKnown RBP17.63■□□□□ 0.41
HMGCS1-205ENST00000508319 KIAA1551Q9HCM1 1747 aa17.63■□□□□ 0.41
HMGCS1-205ENST00000508319 PTCD1O75127 700 aaKnown RBP17.62■□□□□ 0.41
HMGCS1-205ENST00000508319 GRIN3BO60391 1043 aa17.61■□□□□ 0.41
HMGCS1-205ENST00000508319 TRAPPC3LQ5T215 181 aa17.61■□□□□ 0.41
HMGCS1-205ENST00000508319 ARHGEF1Q92888 912 aaKnown RBP17.6■□□□□ 0.41
HMGCS1-205ENST00000508319 SLC52A2Q9HAB3 445 aa17.6■□□□□ 0.41
HMGCS1-205ENST00000508319 LGR6Q9HBX8 967 aa17.6■□□□□ 0.41
HMGCS1-205ENST00000508319 KCPQ6ZWJ8 1503 aa17.6■□□□□ 0.41
HMGCS1-205ENST00000508319 UBR2Q8IWV8 1755 aa17.59■□□□□ 0.41
HMGCS1-205ENST00000508319 RPS6KA4O75676 772 aa17.59■□□□□ 0.41
HMGCS1-205ENST00000508319 MMP10P09238 476 aa17.59■□□□□ 0.41
HMGCS1-205ENST00000508319 MTHFSDQ2M296 383 aaKnown RBP17.59■□□□□ 0.41
HMGCS1-205ENST00000508319 C10orf71Q711Q0 1435 aa17.58■□□□□ 0.41
HMGCS1-205ENST00000508319 RNMTO43148 476 aaKnown RBP17.58■□□□□ 0.4
HMGCS1-205ENST00000508319 CRKLP46109 303 aaKnown RBP17.58■□□□□ 0.4
HMGCS1-205ENST00000508319 CNGB1Q14028 1251 aaPredicted RBP17.58■□□□□ 0.4
HMGCS1-205ENST00000508319 PXDNLA1KZ92 1463 aa17.57■□□□□ 0.4
HMGCS1-205ENST00000508319 GYS1P13807 737 aa17.57■□□□□ 0.4
HMGCS1-205ENST00000508319 N4BP2Q86UW6 1770 aaPredicted RBP17.57■□□□□ 0.4
HMGCS1-205ENST00000508319 SIPA1L3O60292 1781 aaPredicted RBP17.56■□□□□ 0.4
HMGCS1-205ENST00000508319 NLGN1Q8N2Q7 840 aa17.56■□□□□ 0.4
HMGCS1-205ENST00000508319 BRCA1P38398 1863 aaKnown RBP17.55■□□□□ 0.4
HMGCS1-205ENST00000508319 RFC4P35249 363 aa17.55■□□□□ 0.4
HMGCS1-205ENST00000508319 U2SURPO15042 1029 aaKnown RBP17.54■□□□□ 0.4
HMGCS1-205ENST00000508319 SLC39A6Q13433 755 aa17.54■□□□□ 0.4
HMGCS1-205ENST00000508319 INTS5Q6P9B9 1019 aaKnown RBP17.54■□□□□ 0.4
HMGCS1-205ENST00000508319 WWC3Q9ULE0 1092 aa17.54■□□□□ 0.4
HMGCS1-205ENST00000508319 ADCY9O60503 1353 aa17.53■□□□□ 0.4
HMGCS1-205ENST00000508319 USP42Q9H9J4 1324 aaKnown RBP17.53■□□□□ 0.4
HMGCS1-205ENST00000508319 DNAJC10Q8IXB1 793 aa17.53■□□□□ 0.4
HMGCS1-205ENST00000508319 SRP68Q9UHB9 627 aaKnown RBP17.53■□□□□ 0.4
HMGCS1-205ENST00000508319 CCDC87Q9NVE4 849 aa17.52■□□□□ 0.4
HMGCS1-205ENST00000508319 SOS1Q07889 1333 aaPredicted RBP17.51■□□□□ 0.39
HMGCS1-205ENST00000508319 ATP10DQ9P241 1426 aa17.51■□□□□ 0.39
HMGCS1-205ENST00000508319 CYP19A1P11511 503 aaPredicted RBP17.5■□□□□ 0.39
HMGCS1-205ENST00000508319 GAS2L2Q8NHY3 880 aa17.5■□□□□ 0.39
HMGCS1-205ENST00000508319 PARP3Q9Y6F1 533 aa17.5■□□□□ 0.39
HMGCS1-205ENST00000508319 TGFB2P61812 414 aa17.49■□□□□ 0.39
HMGCS1-205ENST00000508319 FKBP8Q14318 412 aa17.49■□□□□ 0.39
HMGCS1-205ENST00000508319 IL17REQ8NFR9 667 aa17.49■□□□□ 0.39
HMGCS1-205ENST00000508319 PPP2R1AP30153 589 aa17.48■□□□□ 0.39
HMGCS1-205ENST00000508319 C1QTNF8P60827 252 aa17.48■□□□□ 0.39
HMGCS1-205ENST00000508319 DDR1Q08345 913 aa17.48■□□□□ 0.39
HMGCS1-205ENST00000508319 VSIG10Q8N0Z9 540 aa17.48■□□□□ 0.39
HMGCS1-205ENST00000508319 CFAP53Q96M91 514 aa17.48■□□□□ 0.39
HMGCS1-205ENST00000508319 RSPH6AQ9H0K4 717 aa17.48■□□□□ 0.39
HMGCS1-205ENST00000508319 ZBTB1Q9Y2K1 713 aa17.48■□□□□ 0.39
HMGCS1-205ENST00000508319 COL15A1P39059 1388 aa17.48■□□□□ 0.39
HMGCS1-205ENST00000508319 CEMIPQ8WUJ3 1361 aa17.48■□□□□ 0.39
HMGCS1-205ENST00000508319 ARFGEF1Q9Y6D6 1849 aa17.47■□□□□ 0.39
HMGCS1-205ENST00000508319 GNAT3A8MTJ3 354 aa17.47■□□□□ 0.39
HMGCS1-205ENST00000508319 GIGYF1O75420 1035 aaPredicted RBP17.47■□□□□ 0.39
HMGCS1-205ENST00000508319 AFDNP55196 1824 aaKnown RBP17.47■□□□□ 0.39
HMGCS1-205ENST00000508319 NRXN2Q9P2S2 1712 aa17.47■□□□□ 0.39
HMGCS1-205ENST00000508319 A0A0G2JLW4 131 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 131.7 ms