RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 KNSTRNQ9Y448 316 aa15.79■□□□□ 0.12
HMGCS1-204ENST00000507293 SCN11AQ9UI33 1791 aa15.79■□□□□ 0.12
HMGCS1-204ENST00000507293 GNPATO15228 680 aa15.78■□□□□ 0.12
HMGCS1-204ENST00000507293 YBX3P16989 372 aaKnown RBP eCLIP15.78■□□□□ 0.123e-11■□□□□ 9.1
HMGCS1-204ENST00000507293 SSFA2P28290 1259 aa15.78■□□□□ 0.12
HMGCS1-204ENST00000507293 PLEKHO1Q53GL0 409 aaPredicted RBP15.78■□□□□ 0.12
HMGCS1-204ENST00000507293 ZNF530Q6P9A1 599 aaPredicted RBP15.78■□□□□ 0.12
HMGCS1-204ENST00000507293 AEBP1Q8IUX7 1158 aa15.78■□□□□ 0.12
HMGCS1-204ENST00000507293 HSP90AB1P08238 724 aaKnown RBP15.77■□□□□ 0.12
HMGCS1-204ENST00000507293 DCAF5Q96JK2 942 aa15.77■□□□□ 0.12
HMGCS1-204ENST00000507293 CD2APQ9Y5K6 639 aa15.77■□□□□ 0.12
HMGCS1-204ENST00000507293 C4AP0C0L4 1744 aa15.77■□□□□ 0.11
HMGCS1-204ENST00000507293 KIF7Q2M1P5 1343 aa15.76■□□□□ 0.11
HMGCS1-204ENST00000507293 ERVV-2B6SEH9 535 aa15.76■□□□□ 0.11
HMGCS1-204ENST00000507293 AMOTQ4VCS5 1084 aa15.76■□□□□ 0.11
HMGCS1-204ENST00000507293 TJP1Q07157 1748 aa15.75■□□□□ 0.11
HMGCS1-204ENST00000507293 AMER1Q5JTC6 1135 aaPredicted RBP15.75■□□□□ 0.11
HMGCS1-204ENST00000507293 SULT6B1Q6IMI4 303 aa15.75■□□□□ 0.11
HMGCS1-204ENST00000507293 MYH14Q7Z406 1995 aaKnown RBP15.75■□□□□ 0.11
HMGCS1-204ENST00000507293 KIF13BQ9NQT8 1826 aa15.74■□□□□ 0.11
HMGCS1-204ENST00000507293 GRIN3BO60391 1043 aa15.74■□□□□ 0.11
HMGCS1-204ENST00000507293 IL13P35225 146 aa15.74■□□□□ 0.11
HMGCS1-204ENST00000507293 C1orf141Q5JVX7 400 aa15.74■□□□□ 0.11
HMGCS1-204ENST00000507293 SLC4A9Q96Q91 983 aa15.74■□□□□ 0.11
HMGCS1-204ENST00000507293 RBM42Q9BTD8 480 aaKnown RBP15.74■□□□□ 0.11
HMGCS1-204ENST00000507293 CICQ96RK0 1608 aaPredicted RBP15.74■□□□□ 0.11
HMGCS1-204ENST00000507293 CABP4P57796 275 aa15.73■□□□□ 0.11
HMGCS1-204ENST00000507293 KIAA1551Q9HCM1 1747 aa15.73■□□□□ 0.11
HMGCS1-204ENST00000507293 MTHFSP49914 203 aa15.72■□□□□ 0.11
HMGCS1-204ENST00000507293 RTCBQ9Y3I0 505 aaKnown RBP15.71■□□□□ 0.11
HMGCS1-204ENST00000507293 N4BP2Q86UW6 1770 aaPredicted RBP15.71■□□□□ 0.11
HMGCS1-204ENST00000507293 UTRNP46939 3433 aa15.71■□□□□ 0.1
HMGCS1-204ENST00000507293 CNTNAP4Q9C0A0 1308 aa15.7■□□□□ 0.1
HMGCS1-204ENST00000507293 WWC3Q9ULE0 1092 aa15.7■□□□□ 0.1
HMGCS1-204ENST00000507293 MMP10P09238 476 aa15.69■□□□□ 0.1
HMGCS1-204ENST00000507293 TRAPPC3LQ5T215 181 aa15.69■□□□□ 0.1
HMGCS1-204ENST00000507293 RC3H1Q5TC82 1133 aaKnown RBP15.69■□□□□ 0.1
HMGCS1-204ENST00000507293 ADAMTS7Q9UKP4 1686 aa15.68■□□□□ 0.1
HMGCS1-204ENST00000507293 MRC1P22897 1456 aa15.68■□□□□ 0.1
HMGCS1-204ENST00000507293 PTCD1O75127 700 aaKnown RBP15.68■□□□□ 0.1
HMGCS1-204ENST00000507293 ADRA2BP18089 450 aa15.68■□□□□ 0.1
HMGCS1-204ENST00000507293 C1QTNF8P60827 252 aa15.68■□□□□ 0.1
HMGCS1-204ENST00000507293 CC2D1BQ5T0F9 858 aaKnown RBP15.68■□□□□ 0.1
HMGCS1-204ENST00000507293 NFATC2IPQ8NCF5 419 aa15.68■□□□□ 0.1
HMGCS1-204ENST00000507293 PER1O15534 1290 aaPredicted RBP15.67■□□□□ 0.1
HMGCS1-204ENST00000507293 GIGYF1O75420 1035 aaPredicted RBP15.67■□□□□ 0.1
HMGCS1-204ENST00000507293 RPS6KA4O75676 772 aa15.67■□□□□ 0.1
HMGCS1-204ENST00000507293 HMOX1P09601 288 aa15.67■□□□□ 0.1
HMGCS1-204ENST00000507293 AKAP4Q5JQC9 854 aa15.67■□□□□ 0.1
HMGCS1-204ENST00000507293 ARHGEF1Q92888 912 aaKnown RBP15.67■□□□□ 0.1
HMGCS1-204ENST00000507293 BRCA1P38398 1863 aaKnown RBP15.67■□□□□ 0.1
HMGCS1-204ENST00000507293 ATP10DQ9P241 1426 aa15.67■□□□□ 0.1
HMGCS1-204ENST00000507293 PXDNLA1KZ92 1463 aa15.66■□□□□ 0.1
HMGCS1-204ENST00000507293 C10orf71Q711Q0 1435 aa15.66■□□□□ 0.1
HMGCS1-204ENST00000507293 COL3A1P02461 1466 aaPredicted RBP15.65■□□□□ 0.1
HMGCS1-204ENST00000507293 RFC4P35249 363 aa15.65■□□□□ 0.1
HMGCS1-204ENST00000507293 NLGN1Q8N2Q7 840 aa15.65■□□□□ 0.1
HMGCS1-204ENST00000507293 UBR2Q8IWV8 1755 aa15.64■□□□□ 0.1
HMGCS1-204ENST00000507293 ADCY9O60503 1353 aa15.64■□□□□ 0.09
HMGCS1-204ENST00000507293 SENP3-EIF4A1A0A087X0R7 540 aa15.64■□□□□ 0.09
HMGCS1-204ENST00000507293 DIAPH1O60610 1272 aaKnown RBP15.64■□□□□ 0.09
HMGCS1-204ENST00000507293 GYS1P13807 737 aa15.64■□□□□ 0.09
HMGCS1-204ENST00000507293 CRKLP46109 303 aaKnown RBP15.64■□□□□ 0.09
HMGCS1-204ENST00000507293 SLC52A2Q9HAB3 445 aa15.64■□□□□ 0.09
HMGCS1-204ENST00000507293 KCPQ6ZWJ8 1503 aa15.63■□□□□ 0.09
HMGCS1-204ENST00000507293 CNGB1Q14028 1251 aaPredicted RBP15.63■□□□□ 0.09
HMGCS1-204ENST00000507293 LGR6Q9HBX8 967 aa15.63■□□□□ 0.09
HMGCS1-204ENST00000507293 NPC1L1Q9UHC9 1359 aa15.62■□□□□ 0.09
HMGCS1-204ENST00000507293 RNMTO43148 476 aaKnown RBP15.62■□□□□ 0.09
HMGCS1-204ENST00000507293 MTHFSDQ2M296 383 aaKnown RBP15.62■□□□□ 0.09
HMGCS1-204ENST00000507293 DNAJC10Q8IXB1 793 aa15.61■□□□□ 0.09
HMGCS1-204ENST00000507293 CCDC87Q9NVE4 849 aa15.61■□□□□ 0.09
HMGCS1-204ENST00000507293 SRP68Q9UHB9 627 aaKnown RBP15.61■□□□□ 0.09
HMGCS1-204ENST00000507293 PARP3Q9Y6F1 533 aa15.61■□□□□ 0.09
HMGCS1-204ENST00000507293 SIPA1L3O60292 1781 aaPredicted RBP15.61■□□□□ 0.09
HMGCS1-204ENST00000507293 USP42Q9H9J4 1324 aaKnown RBP15.61■□□□□ 0.09
HMGCS1-204ENST00000507293 GOLGB1Q14789 3259 aaKnown RBP15.61■□□□□ 0.09
HMGCS1-204ENST00000507293 ARFGEF1Q9Y6D6 1849 aa15.61■□□□□ 0.09
HMGCS1-204ENST00000507293 TGFB2P61812 414 aa15.6■□□□□ 0.09
HMGCS1-204ENST00000507293 SLC39A6Q13433 755 aa15.6■□□□□ 0.09
HMGCS1-204ENST00000507293 INTS5Q6P9B9 1019 aaKnown RBP15.6■□□□□ 0.09
HMGCS1-204ENST00000507293 A0A0G2JLW4 131 aa15.59■□□□□ 0.09
HMGCS1-204ENST00000507293 ZNF526Q8TF50 670 aaPredicted RBP15.59■□□□□ 0.09
HMGCS1-204ENST00000507293 AFDNP55196 1824 aaKnown RBP15.59■□□□□ 0.09
HMGCS1-204ENST00000507293 U2SURPO15042 1029 aaKnown RBP15.58■□□□□ 0.08
HMGCS1-204ENST00000507293 DPEP1P16444 411 aa15.58■□□□□ 0.08
HMGCS1-204ENST00000507293 FKBP8Q14318 412 aa15.58■□□□□ 0.08
HMGCS1-204ENST00000507293 GPBP1L1Q9HC44 474 aaPredicted RBP15.58■□□□□ 0.08
HMGCS1-204ENST00000507293 BCS1LQ9Y276 419 aa15.58■□□□□ 0.08
HMGCS1-204ENST00000507293 DDR1Q08345 913 aa15.57■□□□□ 0.08
HMGCS1-204ENST00000507293 SOS1Q07889 1333 aaPredicted RBP15.57■□□□□ 0.08
HMGCS1-204ENST00000507293 CYP19A1P11511 503 aaPredicted RBP15.56■□□□□ 0.08
HMGCS1-204ENST00000507293 NRXN2Q9P2S2 1712 aa15.55■□□□□ 0.08
HMGCS1-204ENST00000507293 COL15A1P39059 1388 aa15.55■□□□□ 0.08
HMGCS1-204ENST00000507293 USPL1Q5W0Q7 1092 aa15.55■□□□□ 0.08
HMGCS1-204ENST00000507293 ZPR1O75312 459 aa15.54■□□□□ 0.08
HMGCS1-204ENST00000507293 FCHSD2O94868 740 aa15.54■□□□□ 0.08
HMGCS1-204ENST00000507293 ZBTB1Q9Y2K1 713 aa15.54■□□□□ 0.08
HMGCS1-204ENST00000507293 DLEC1Q9Y238 1755 aa15.54■□□□□ 0.08
HMGCS1-204ENST00000507293 SCN7AQ01118 1682 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 252.8 ms