RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 GPR162Q16538 588 aa19.53■□□□□ 0.72
HMGCS1-203ENST00000507004 CD2APQ9Y5K6 639 aa19.53■□□□□ 0.72
HMGCS1-203ENST00000507004 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.52■□□□□ 0.72
HMGCS1-203ENST00000507004 ZNF831Q5JPB2 1677 aa19.52■□□□□ 0.71
HMGCS1-203ENST00000507004 RC3H1Q5TC82 1133 aaKnown RBP19.51■□□□□ 0.71
HMGCS1-203ENST00000507004 AEBP1Q8IUX7 1158 aa19.51■□□□□ 0.71
HMGCS1-203ENST00000507004 LINC00116Q8NCU8 138 aa19.51■□□□□ 0.71
HMGCS1-203ENST00000507004 GRIN3BO60391 1043 aa19.5■□□□□ 0.71
HMGCS1-203ENST00000507004 DIAPH1O60610 1272 aaKnown RBP19.5■□□□□ 0.71
HMGCS1-203ENST00000507004 ADRA2BP18089 450 aa19.5■□□□□ 0.71
HMGCS1-203ENST00000507004 AKAP4Q5JQC9 854 aa19.5■□□□□ 0.71
HMGCS1-203ENST00000507004 UBR3Q6ZT12 1888 aa19.5■□□□□ 0.71
HMGCS1-203ENST00000507004 GNPATO15228 680 aa19.49■□□□□ 0.71
HMGCS1-203ENST00000507004 RTCBQ9Y3I0 505 aaKnown RBP19.49■□□□□ 0.71
HMGCS1-203ENST00000507004 KDM6AO15550 1401 aaPredicted RBP19.49■□□□□ 0.71
HMGCS1-203ENST00000507004 CHD4Q14839 1912 aa19.49■□□□□ 0.71
HMGCS1-203ENST00000507004 PHF14O94880 888 aa19.48■□□□□ 0.71
HMGCS1-203ENST00000507004 ITPK1Q13572 414 aa19.48■□□□□ 0.71
HMGCS1-203ENST00000507004 CC2D1BQ5T0F9 858 aaKnown RBP19.48■□□□□ 0.71
HMGCS1-203ENST00000507004 MSL1Q68DK7 614 aa19.48■□□□□ 0.71
HMGCS1-203ENST00000507004 RBM42Q9BTD8 480 aaKnown RBP19.48■□□□□ 0.71
HMGCS1-203ENST00000507004 CNTNAP4Q9C0A0 1308 aa19.48■□□□□ 0.71
HMGCS1-203ENST00000507004 TRAPPC3LQ5T215 181 aa19.46■□□□□ 0.71
HMGCS1-203ENST00000507004 NLGN1Q8N2Q7 840 aa19.45■□□□□ 0.7
HMGCS1-203ENST00000507004 PELP1Q8IZL8 1130 aaKnown RBP19.44■□□□□ 0.7
HMGCS1-203ENST00000507004 NFATC2IPQ8NCF5 419 aa19.44■□□□□ 0.7
HMGCS1-203ENST00000507004 NLGN2Q8NFZ4 835 aa19.44■□□□□ 0.7
HMGCS1-203ENST00000507004 RPS6KA4O75676 772 aa19.43■□□□□ 0.7
HMGCS1-203ENST00000507004 CFAP53Q96M91 514 aa19.43■□□□□ 0.7
HMGCS1-203ENST00000507004 SLC52A2Q9HAB3 445 aa19.42■□□□□ 0.7
HMGCS1-203ENST00000507004 HMOX1P09601 288 aa19.41■□□□□ 0.7
HMGCS1-203ENST00000507004 RFC4P35249 363 aa19.41■□□□□ 0.7
HMGCS1-203ENST00000507004 AMIGO3Q86WK7 504 aa19.41■□□□□ 0.7
HMGCS1-203ENST00000507004 ZNF784Q8NCA9 323 aaPredicted RBP19.41■□□□□ 0.7
HMGCS1-203ENST00000507004 SLC4A9Q96Q91 983 aa19.41■□□□□ 0.7
HMGCS1-203ENST00000507004 SCN11AQ9UI33 1791 aa19.41■□□□□ 0.7
HMGCS1-203ENST00000507004 GAS2L2Q8NHY3 880 aa19.4■□□□□ 0.7
HMGCS1-203ENST00000507004 RNMTO43148 476 aaKnown RBP19.39■□□□□ 0.69
HMGCS1-203ENST00000507004 PTCD1O75127 700 aaKnown RBP19.39■□□□□ 0.69
HMGCS1-203ENST00000507004 NUDCQ9Y266 331 aa19.39■□□□□ 0.69
HMGCS1-203ENST00000507004 MRC1P22897 1456 aa19.38■□□□□ 0.69
HMGCS1-203ENST00000507004 COL5A3P25940 1745 aaPredicted RBP19.38■□□□□ 0.69
HMGCS1-203ENST00000507004 MTHFSDQ2M296 383 aaKnown RBP19.38■□□□□ 0.69
HMGCS1-203ENST00000507004 ARHGEF1Q92888 912 aaKnown RBP19.38■□□□□ 0.69
HMGCS1-203ENST00000507004 CICQ96RK0 1608 aaPredicted RBP19.38■□□□□ 0.69
HMGCS1-203ENST00000507004 U2SURPO15042 1029 aaKnown RBP19.37■□□□□ 0.69
HMGCS1-203ENST00000507004 MMP10P09238 476 aa19.37■□□□□ 0.69
HMGCS1-203ENST00000507004 COL3A1P02461 1466 aaPredicted RBP19.36■□□□□ 0.69
HMGCS1-203ENST00000507004 CRKLP46109 303 aaKnown RBP19.36■□□□□ 0.69
HMGCS1-203ENST00000507004 VSIG10Q8N0Z9 540 aa19.36■□□□□ 0.69
HMGCS1-203ENST00000507004 YBX3P16989 372 aaKnown RBP eCLIP19.35■□□□□ 0.693e-11■□□□□ 9.1
HMGCS1-203ENST00000507004 TGFB2P61812 414 aa19.35■□□□□ 0.69
HMGCS1-203ENST00000507004 CCDC87Q9NVE4 849 aa19.35■□□□□ 0.69
HMGCS1-203ENST00000507004 SMIM5Q71RC9 77 aa19.34■□□□□ 0.69
HMGCS1-203ENST00000507004 LGR6Q9HBX8 967 aa19.34■□□□□ 0.69
HMGCS1-203ENST00000507004 PARP3Q9Y6F1 533 aa19.34■□□□□ 0.69
HMGCS1-203ENST00000507004 ADAMTS7Q9UKP4 1686 aa19.33■□□□□ 0.69
HMGCS1-203ENST00000507004 GNAT3A8MTJ3 354 aa19.33■□□□□ 0.68
HMGCS1-203ENST00000507004 GYS1P13807 737 aa19.33■□□□□ 0.68
HMGCS1-203ENST00000507004 TTC5Q8N0Z6 440 aa19.33■□□□□ 0.68
HMGCS1-203ENST00000507004 TEFQ10587 303 aa19.32■□□□□ 0.68
HMGCS1-203ENST00000507004 USP42Q9H9J4 1324 aaKnown RBP19.31■□□□□ 0.68
HMGCS1-203ENST00000507004 TEX13AQ9BXU3 409 aaPredicted RBP19.31■□□□□ 0.68
HMGCS1-203ENST00000507004 MYH14Q7Z406 1995 aaKnown RBP19.31■□□□□ 0.68
HMGCS1-203ENST00000507004 CNGB1Q14028 1251 aaPredicted RBP19.3■□□□□ 0.68
HMGCS1-203ENST00000507004 DNAJC10Q8IXB1 793 aa19.3■□□□□ 0.68
HMGCS1-203ENST00000507004 TJP1Q07157 1748 aa19.29■□□□□ 0.68
HMGCS1-203ENST00000507004 C10orf71Q711Q0 1435 aa19.29■□□□□ 0.68
HMGCS1-203ENST00000507004 ZPR1O75312 459 aa19.29■□□□□ 0.68
HMGCS1-203ENST00000507004 STARD3NLO95772 234 aa19.29■□□□□ 0.68
HMGCS1-203ENST00000507004 INTS5Q6P9B9 1019 aaKnown RBP19.29■□□□□ 0.68
HMGCS1-203ENST00000507004 FCHSD2O94868 740 aa19.28■□□□□ 0.68
HMGCS1-203ENST00000507004 CYP19A1P11511 503 aaPredicted RBP19.28■□□□□ 0.68
HMGCS1-203ENST00000507004 PPP2R1AP30153 589 aa19.28■□□□□ 0.68
HMGCS1-203ENST00000507004 KIF13BQ9NQT8 1826 aa19.28■□□□□ 0.68
HMGCS1-203ENST00000507004 SOS1Q07889 1333 aaPredicted RBP19.27■□□□□ 0.68
HMGCS1-203ENST00000507004 PRKAR2BP31323 418 aa19.27■□□□□ 0.68
HMGCS1-203ENST00000507004 SLC39A6Q13433 755 aa19.27■□□□□ 0.68
HMGCS1-203ENST00000507004 C4AP0C0L4 1744 aa19.27■□□□□ 0.68
HMGCS1-203ENST00000507004 VIRMAQ69YN4 1812 aaKnown RBP19.27■□□□□ 0.68
HMGCS1-203ENST00000507004 KCPQ6ZWJ8 1503 aa19.26■□□□□ 0.67
HMGCS1-203ENST00000507004 A0A087WZG4 1122 aa19.26■□□□□ 0.67
HMGCS1-203ENST00000507004 NEFMP07197 916 aa19.26■□□□□ 0.67
HMGCS1-203ENST00000507004 U2AF1L5P0DN76 240 aaPredicted RBP19.26■□□□□ 0.67
HMGCS1-203ENST00000507004 U2AF1Q01081 240 aaKnown RBP eCLIP19.26■□□□□ 0.67
HMGCS1-203ENST00000507004 RSPH6AQ9H0K4 717 aa19.26■□□□□ 0.67
HMGCS1-203ENST00000507004 UTRNP46939 3433 aa19.25■□□□□ 0.67
HMGCS1-203ENST00000507004 PXDNLA1KZ92 1463 aa19.25■□□□□ 0.67
HMGCS1-203ENST00000507004 CEMIPQ8WUJ3 1361 aa19.25■□□□□ 0.67
HMGCS1-203ENST00000507004 GIGYF1O75420 1035 aaPredicted RBP19.25■□□□□ 0.67
HMGCS1-203ENST00000507004 ZNF790Q6PG37 636 aa19.25■□□□□ 0.67
HMGCS1-203ENST00000507004 IL17REQ8NFR9 667 aa19.25■□□□□ 0.67
HMGCS1-203ENST00000507004 RTF1Q92541 710 aaKnown RBP19.25■□□□□ 0.67
HMGCS1-203ENST00000507004 NARFQ9UHQ1 456 aa19.25■□□□□ 0.67
HMGCS1-203ENST00000507004 HTATSF1O43719 755 aaKnown RBP19.24■□□□□ 0.67
HMGCS1-203ENST00000507004 COL15A1P39059 1388 aa19.23■□□□□ 0.67
HMGCS1-203ENST00000507004 C1QTNF8P60827 252 aa19.23■□□□□ 0.67
HMGCS1-203ENST00000507004 FKBP8Q14318 412 aa19.23■□□□□ 0.67
HMGCS1-203ENST00000507004 NPM2Q86SE8 214 aaKnown RBP19.23■□□□□ 0.67
HMGCS1-203ENST00000507004 FMNL2Q96PY5 1086 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms