RNA–Protein interactions for RNA: ENST00000506632.2

PDLIM5-209, Transcript of PDZ and LIM domain 5, humanhuman

TSL 3

Gene PDLIM5, Length 907 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-209ENST00000506632 COL23A1Q86Y22 540 aaPredicted RBP12.3□□□□□ -0.44
PDLIM5-209ENST00000506632 ARXQ96QS3 562 aa12.3□□□□□ -0.44
PDLIM5-209ENST00000506632 ATG3Q9NT62 314 aa12.3□□□□□ -0.44
PDLIM5-209ENST00000506632 DIAPH1O60610 1272 aaKnown RBP12.29□□□□□ -0.44
PDLIM5-209ENST00000506632 SYT17Q9BSW7 474 aa12.29□□□□□ -0.44
PDLIM5-209ENST00000506632 FHDC1Q9C0D6 1143 aaPredicted RBP12.29□□□□□ -0.44
PDLIM5-209ENST00000506632 SCN11AQ9UI33 1791 aa12.28□□□□□ -0.44
PDLIM5-209ENST00000506632 ITPK1Q13572 414 aa12.28□□□□□ -0.44
PDLIM5-209ENST00000506632 C1orf141Q5JVX7 400 aa12.28□□□□□ -0.44
PDLIM5-209ENST00000506632 AMIGO3Q86WK7 504 aa12.28□□□□□ -0.44
PDLIM5-209ENST00000506632 LINC00116Q8NCU8 138 aa12.28□□□□□ -0.44
PDLIM5-209ENST00000506632 FLAD1Q8NFF5 587 aa12.28□□□□□ -0.44
PDLIM5-209ENST00000506632 ADAMTS7Q9UKP4 1686 aa12.28□□□□□ -0.44
PDLIM5-209ENST00000506632 HMOX1P09601 288 aa12.27□□□□□ -0.45
PDLIM5-209ENST00000506632 SLC4A9Q96Q91 983 aa12.27□□□□□ -0.45
PDLIM5-209ENST00000506632 MRC1P22897 1456 aa12.27□□□□□ -0.45
PDLIM5-209ENST00000506632 CICQ96RK0 1608 aaPredicted RBP12.26□□□□□ -0.45
PDLIM5-209ENST00000506632 COL5A3P25940 1745 aaPredicted RBP12.26□□□□□ -0.45
PDLIM5-209ENST00000506632 POLD1P28340 1107 aa12.26□□□□□ -0.45
PDLIM5-209ENST00000506632 ATP6V1AP38606 617 aa12.26□□□□□ -0.45
PDLIM5-209ENST00000506632 CABP4P57796 275 aa12.26□□□□□ -0.45
PDLIM5-209ENST00000506632 AKAP4Q5JQC9 854 aa12.26□□□□□ -0.45
PDLIM5-209ENST00000506632 AK7Q96M32 723 aa12.26□□□□□ -0.45
PDLIM5-209ENST00000506632 SSFA2P28290 1259 aa12.25□□□□□ -0.45
PDLIM5-209ENST00000506632 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.24□□□□□ -0.45
PDLIM5-209ENST00000506632 MSH5O43196 834 aa12.24□□□□□ -0.45
PDLIM5-209ENST00000506632 MAPK8IP2Q13387 824 aaPredicted RBP12.24□□□□□ -0.45
PDLIM5-209ENST00000506632 CNGB1Q14028 1251 aaPredicted RBP12.24□□□□□ -0.45
PDLIM5-209ENST00000506632 MTHFSDQ2M296 383 aaKnown RBP12.24□□□□□ -0.45
PDLIM5-209ENST00000506632 NFATC2IPQ8NCF5 419 aa12.24□□□□□ -0.45
PDLIM5-209ENST00000506632 VIRMAQ69YN4 1812 aaKnown RBP12.23□□□□□ -0.45
PDLIM5-209ENST00000506632 RNMTO43148 476 aaKnown RBP12.23□□□□□ -0.45
PDLIM5-209ENST00000506632 PPP2R1AP30153 589 aa12.23□□□□□ -0.45
PDLIM5-209ENST00000506632 SMIM5Q71RC9 77 aa12.23□□□□□ -0.45
PDLIM5-209ENST00000506632 RBM42Q9BTD8 480 aaKnown RBP12.23□□□□□ -0.45
PDLIM5-209ENST00000506632 SLC52A2Q9HAB3 445 aa12.23□□□□□ -0.45
PDLIM5-209ENST00000506632 LGR6Q9HBX8 967 aa12.23□□□□□ -0.45
PDLIM5-209ENST00000506632 RNF216Q9NWF9 866 aaPredicted RBP12.23□□□□□ -0.45
PDLIM5-209ENST00000506632 TJP1Q07157 1748 aa12.23□□□□□ -0.45
PDLIM5-209ENST00000506632 CNTNAP4Q9C0A0 1308 aa12.22□□□□□ -0.45
PDLIM5-209ENST00000506632 MYH14Q7Z406 1995 aaKnown RBP12.22□□□□□ -0.45
PDLIM5-209ENST00000506632 GNPATO15228 680 aa12.22□□□□□ -0.45
PDLIM5-209ENST00000506632 RC3H1Q5TC82 1133 aaKnown RBP12.22□□□□□ -0.45
PDLIM5-209ENST00000506632 MSL1Q68DK7 614 aa12.22□□□□□ -0.45
PDLIM5-209ENST00000506632 DCAF8L1A6NGE4 600 aa12.21□□□□□ -0.45
PDLIM5-209ENST00000506632 U2SURPO15042 1029 aaKnown RBP12.21□□□□□ -0.45
PDLIM5-209ENST00000506632 PHF14O94880 888 aa12.21□□□□□ -0.45
PDLIM5-209ENST00000506632 PTCD1O75127 700 aaKnown RBP12.2□□□□□ -0.46
PDLIM5-209ENST00000506632 NLGN2Q8NFZ4 835 aa12.2□□□□□ -0.46
PDLIM5-209ENST00000506632 CFAP53Q96M91 514 aa12.2□□□□□ -0.46
PDLIM5-209ENST00000506632 RSPH6AQ9H0K4 717 aa12.2□□□□□ -0.46
PDLIM5-209ENST00000506632 KCPQ6ZWJ8 1503 aa12.2□□□□□ -0.46
PDLIM5-209ENST00000506632 RPS6KA4O75676 772 aa12.19□□□□□ -0.46
PDLIM5-209ENST00000506632 RTCBQ9Y3I0 505 aaKnown RBP12.19□□□□□ -0.46
PDLIM5-209ENST00000506632 UBR2Q8IWV8 1755 aa12.18□□□□□ -0.46
PDLIM5-209ENST00000506632 C4AP0C0L4 1744 aa12.18□□□□□ -0.46
PDLIM5-209ENST00000506632 YY1P25490 414 aa12.18□□□□□ -0.46
PDLIM5-209ENST00000506632 GAS2L2Q8NHY3 880 aa12.18□□□□□ -0.46
PDLIM5-209ENST00000506632 CD2APQ9Y5K6 639 aa12.18□□□□□ -0.46
PDLIM5-209ENST00000506632 SIPA1L3O60292 1781 aaPredicted RBP12.18□□□□□ -0.46
PDLIM5-209ENST00000506632 CEMIPQ8WUJ3 1361 aa12.18□□□□□ -0.46
PDLIM5-209ENST00000506632 PRKAR2BP31323 418 aa12.17□□□□□ -0.46
PDLIM5-209ENST00000506632 CRKLP46109 303 aaKnown RBP12.17□□□□□ -0.46
PDLIM5-209ENST00000506632 SLC39A6Q13433 755 aa12.17□□□□□ -0.46
PDLIM5-209ENST00000506632 TRAPPC3LQ5T215 181 aa12.17□□□□□ -0.46
PDLIM5-209ENST00000506632 KLHL34Q8N239 644 aa12.17□□□□□ -0.46
PDLIM5-209ENST00000506632 IL17REQ8NFR9 667 aa12.17□□□□□ -0.46
PDLIM5-209ENST00000506632 PHACTR3Q96KR7 559 aa12.17□□□□□ -0.46
PDLIM5-209ENST00000506632 NUDCQ9Y266 331 aa12.17□□□□□ -0.46
PDLIM5-209ENST00000506632 GNAT3A8MTJ3 354 aa12.16□□□□□ -0.46
PDLIM5-209ENST00000506632 ARHGEF1Q92888 912 aaKnown RBP12.16□□□□□ -0.46
PDLIM5-209ENST00000506632 CHD4Q14839 1912 aa12.15□□□□□ -0.46
PDLIM5-209ENST00000506632 FCHSD2O94868 740 aa12.15□□□□□ -0.46
PDLIM5-209ENST00000506632 GYS1P13807 737 aa12.15□□□□□ -0.46
PDLIM5-209ENST00000506632 INTS5Q6P9B9 1019 aaKnown RBP12.15□□□□□ -0.46
PDLIM5-209ENST00000506632 DNAJC10Q8IXB1 793 aa12.15□□□□□ -0.46
PDLIM5-209ENST00000506632 VSIG10Q8N0Z9 540 aa12.15□□□□□ -0.46
PDLIM5-209ENST00000506632 KIF13BQ9NQT8 1826 aa12.14□□□□□ -0.47
PDLIM5-209ENST00000506632 U2AF1L5P0DN76 240 aaPredicted RBP12.14□□□□□ -0.47
PDLIM5-209ENST00000506632 CYP19A1P11511 503 aaPredicted RBP12.14□□□□□ -0.47
PDLIM5-209ENST00000506632 U2AF1Q01081 240 aaKnown RBP eCLIP12.14□□□□□ -0.47
PDLIM5-209ENST00000506632 GPR162Q16538 588 aa12.14□□□□□ -0.47
PDLIM5-209ENST00000506632 NLGN1Q8N2Q7 840 aa12.14□□□□□ -0.47
PDLIM5-209ENST00000506632 CCDC87Q9NVE4 849 aa12.14□□□□□ -0.47
PDLIM5-209ENST00000506632 USP42Q9H9J4 1324 aaKnown RBP12.13□□□□□ -0.47
PDLIM5-209ENST00000506632 MMP10P09238 476 aa12.13□□□□□ -0.47
PDLIM5-209ENST00000506632 YBX3P16989 372 aaKnown RBP eCLIP12.13□□□□□ -0.476e-6■□□□□ 10.6
PDLIM5-209ENST00000506632 RFC4P35249 363 aa12.13□□□□□ -0.47
PDLIM5-209ENST00000506632 SOS1Q07889 1333 aaPredicted RBP12.12□□□□□ -0.47
PDLIM5-209ENST00000506632 KIAA1551Q9HCM1 1747 aa12.12□□□□□ -0.47
PDLIM5-209ENST00000506632 TEFQ10587 303 aa12.12□□□□□ -0.47
PDLIM5-209ENST00000506632 FKBP8Q14318 412 aa12.12□□□□□ -0.47
PDLIM5-209ENST00000506632 ZNF790Q6PG37 636 aa12.12□□□□□ -0.47
PDLIM5-209ENST00000506632 UTRNP46939 3433 aa12.12□□□□□ -0.47
PDLIM5-209ENST00000506632 C10orf71Q711Q0 1435 aa12.11□□□□□ -0.47
PDLIM5-209ENST00000506632 HEG1Q9ULI3 1381 aa12.11□□□□□ -0.47
PDLIM5-209ENST00000506632 TTC5Q8N0Z6 440 aa12.11□□□□□ -0.47
PDLIM5-209ENST00000506632 ZNF496Q96IT1 587 aaPredicted RBP12.11□□□□□ -0.47
PDLIM5-209ENST00000506632 SRP68Q9UHB9 627 aaKnown RBP12.11□□□□□ -0.47
PDLIM5-209ENST00000506632 ZBTB1Q9Y2K1 713 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms