RNA–Protein interactions for RNA: ENST00000503982.1

LSM6-203, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 820 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-203ENST00000503982 ATG3Q9NT62 314 aa29.87■■■□□ 2.37
LSM6-203ENST00000503982 ERVV-2B6SEH9 535 aa29.86■■■□□ 2.37
LSM6-203ENST00000503982 CABP4P57796 275 aa29.86■■■□□ 2.37
LSM6-203ENST00000503982 GPR162Q16538 588 aa29.86■■■□□ 2.37
LSM6-203ENST00000503982 MAP3K5Q99683 1374 aa29.86■■■□□ 2.37
LSM6-203ENST00000503982 LINC00116Q8NCU8 138 aa29.85■■■□□ 2.37
LSM6-203ENST00000503982 PER1O15534 1290 aaPredicted RBP29.84■■■□□ 2.37
LSM6-203ENST00000503982 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.82■■■□□ 2.36
LSM6-203ENST00000503982 HMOX1P09601 288 aa29.82■■■□□ 2.36
LSM6-203ENST00000503982 SMIM5Q71RC9 77 aa29.82■■■□□ 2.36
LSM6-203ENST00000503982 CHD4Q14839 1912 aa29.82■■■□□ 2.36
LSM6-203ENST00000503982 GNPATO15228 680 aa29.81■■■□□ 2.36
LSM6-203ENST00000503982 ITPK1Q13572 414 aa29.81■■■□□ 2.36
LSM6-203ENST00000503982 KDM6AO15550 1401 aaPredicted RBP29.8■■■□□ 2.36
LSM6-203ENST00000503982 DIAPH1O60610 1272 aaKnown RBP29.8■■■□□ 2.36
LSM6-203ENST00000503982 KDRP35968 1356 aa29.79■■■□□ 2.36
LSM6-203ENST00000503982 SSFA2P28290 1259 aa29.79■■■□□ 2.36
LSM6-203ENST00000503982 NLGN2Q8NFZ4 835 aa29.78■■■□□ 2.36
LSM6-203ENST00000503982 SCN11AQ9UI33 1791 aa29.77■■■□□ 2.36
LSM6-203ENST00000503982 AMIGO3Q86WK7 504 aa29.77■■■□□ 2.36
LSM6-203ENST00000503982 VIRMAQ69YN4 1812 aaKnown RBP29.77■■■□□ 2.36
LSM6-203ENST00000503982 AKAP4Q5JQC9 854 aa29.75■■■□□ 2.35
LSM6-203ENST00000503982 NFATC2IPQ8NCF5 419 aa29.75■■■□□ 2.35
LSM6-203ENST00000503982 U2SURPO15042 1029 aaKnown RBP29.74■■■□□ 2.35
LSM6-203ENST00000503982 PTCD1O75127 700 aaKnown RBP29.73■■■□□ 2.35
LSM6-203ENST00000503982 RTCBQ9Y3I0 505 aaKnown RBP29.73■■■□□ 2.35
LSM6-203ENST00000503982 NPC1L1Q9UHC9 1359 aa29.72■■■□□ 2.35
LSM6-203ENST00000503982 ZNF831Q5JPB2 1677 aa29.72■■■□□ 2.35
LSM6-203ENST00000503982 COL5A3P25940 1745 aaPredicted RBP29.71■■■□□ 2.35
LSM6-203ENST00000503982 TRAPPC3LQ5T215 181 aa29.69■■■□□ 2.34
LSM6-203ENST00000503982 SLC4A9Q96Q91 983 aa29.69■■■□□ 2.34
LSM6-203ENST00000503982 CFAP53Q96M91 514 aa29.66■■■□□ 2.34
LSM6-203ENST00000503982 LGR6Q9HBX8 967 aa29.66■■■□□ 2.34
LSM6-203ENST00000503982 CD2APQ9Y5K6 639 aa29.66■■■□□ 2.34
LSM6-203ENST00000503982 MTHFSDQ2M296 383 aaKnown RBP29.65■■■□□ 2.34
LSM6-203ENST00000503982 SLC52A2Q9HAB3 445 aa29.65■■■□□ 2.34
LSM6-203ENST00000503982 RNMTO43148 476 aaKnown RBP29.64■■■□□ 2.34
LSM6-203ENST00000503982 RC3H1Q5TC82 1133 aaKnown RBP29.64■■■□□ 2.34
LSM6-203ENST00000503982 CNTNAP4Q9C0A0 1308 aa29.64■■■□□ 2.34
LSM6-203ENST00000503982 RFC4P35249 363 aa29.63■■■□□ 2.33
LSM6-203ENST00000503982 MYH14Q7Z406 1995 aaKnown RBP29.63■■■□□ 2.33
LSM6-203ENST00000503982 COL3A1P02461 1466 aaPredicted RBP29.61■■■□□ 2.33
LSM6-203ENST00000503982 GRIN3BO60391 1043 aa29.61■■■□□ 2.33
LSM6-203ENST00000503982 RPS6KA4O75676 772 aa29.61■■■□□ 2.33
LSM6-203ENST00000503982 ARHGEF1Q92888 912 aaKnown RBP29.61■■■□□ 2.33
LSM6-203ENST00000503982 TJP1Q07157 1748 aa29.61■■■□□ 2.33
LSM6-203ENST00000503982 MMP10P09238 476 aa29.6■■■□□ 2.33
LSM6-203ENST00000503982 ADRA2BP18089 450 aa29.6■■■□□ 2.33
LSM6-203ENST00000503982 CRKLP46109 303 aaKnown RBP29.59■■■□□ 2.33
LSM6-203ENST00000503982 SLC39A6Q13433 755 aa29.59■■■□□ 2.33
LSM6-203ENST00000503982 ZNF784Q8NCA9 323 aaPredicted RBP29.59■■■□□ 2.33
LSM6-203ENST00000503982 WWC3Q9ULE0 1092 aa29.59■■■□□ 2.33
LSM6-203ENST00000503982 UTRNP46939 3433 aa29.59■■■□□ 2.33
LSM6-203ENST00000503982 YBX3P16989 372 aaKnown RBP eCLIP29.58■■■□□ 2.333e-6■□□□□ 8.1
LSM6-203ENST00000503982 C4AP0C0L4 1744 aa29.57■■■□□ 2.32
LSM6-203ENST00000503982 NLGN1Q8N2Q7 840 aa29.57■■■□□ 2.32
LSM6-203ENST00000503982 GAS2L2Q8NHY3 880 aa29.57■■■□□ 2.32
LSM6-203ENST00000503982 NUDCQ9Y266 331 aa29.57■■■□□ 2.32
LSM6-203ENST00000503982 MRC1P22897 1456 aa29.55■■■□□ 2.32
LSM6-203ENST00000503982 ZEB1P37275 1124 aaPredicted RBP29.55■■■□□ 2.32
LSM6-203ENST00000503982 DNAJC10Q8IXB1 793 aa29.54■■■□□ 2.32
LSM6-203ENST00000503982 CICQ96RK0 1608 aaPredicted RBP29.53■■■□□ 2.32
LSM6-203ENST00000503982 TEFQ10587 303 aa29.53■■■□□ 2.32
LSM6-203ENST00000503982 TTC5Q8N0Z6 440 aa29.53■■■□□ 2.32
LSM6-203ENST00000503982 GNAT3A8MTJ3 354 aa29.52■■■□□ 2.32
LSM6-203ENST00000503982 PPP2R1AP30153 589 aa29.52■■■□□ 2.32
LSM6-203ENST00000503982 PARP3Q9Y6F1 533 aa29.52■■■□□ 2.32
LSM6-203ENST00000503982 ADAMTS7Q9UKP4 1686 aa29.51■■■□□ 2.31
LSM6-203ENST00000503982 GYS1P13807 737 aa29.51■■■□□ 2.31
LSM6-203ENST00000503982 U2AF1L5P0DN76 240 aaPredicted RBP29.5■■■□□ 2.31
LSM6-203ENST00000503982 PRKAR2BP31323 418 aa29.5■■■□□ 2.31
LSM6-203ENST00000503982 U2AF1Q01081 240 aaKnown RBP eCLIP29.5■■■□□ 2.31
LSM6-203ENST00000503982 CCDC87Q9NVE4 849 aa29.5■■■□□ 2.31
LSM6-203ENST00000503982 SRP68Q9UHB9 627 aaKnown RBP29.49■■■□□ 2.31
LSM6-203ENST00000503982 N4BP2Q86UW6 1770 aaPredicted RBP29.48■■■□□ 2.31
LSM6-203ENST00000503982 GOLGB1Q14789 3259 aaKnown RBP29.47■■■□□ 2.31
LSM6-203ENST00000503982 KCPQ6ZWJ8 1503 aa29.47■■■□□ 2.31
LSM6-203ENST00000503982 ZPR1O75312 459 aa29.46■■■□□ 2.31
LSM6-203ENST00000503982 INTS5Q6P9B9 1019 aaKnown RBP29.46■■■□□ 2.31
LSM6-203ENST00000503982 KIF13BQ9NQT8 1826 aa29.45■■■□□ 2.31
LSM6-203ENST00000503982 UBR2Q8IWV8 1755 aa29.45■■■□□ 2.31
LSM6-203ENST00000503982 USP42Q9H9J4 1324 aaKnown RBP29.45■■■□□ 2.3
LSM6-203ENST00000503982 CYP19A1P11511 503 aaPredicted RBP29.44■■■□□ 2.3
LSM6-203ENST00000503982 RSPH6AQ9H0K4 717 aa29.44■■■□□ 2.3
LSM6-203ENST00000503982 IL17REQ8NFR9 667 aa29.43■■■□□ 2.3
LSM6-203ENST00000503982 PHACTR3Q96KR7 559 aa29.43■■■□□ 2.3
LSM6-203ENST00000503982 SIPA1L3O60292 1781 aaPredicted RBP29.42■■■□□ 2.3
LSM6-203ENST00000503982 VSIG10Q8N0Z9 540 aa29.42■■■□□ 2.3
LSM6-203ENST00000503982 FKBP8Q14318 412 aa29.41■■■□□ 2.3
LSM6-203ENST00000503982 USPL1Q5W0Q7 1092 aa29.41■■■□□ 2.3
LSM6-203ENST00000503982 RTF1Q92541 710 aaKnown RBP29.41■■■□□ 2.3
LSM6-203ENST00000503982 ZBTB1Q9Y2K1 713 aa29.41■■■□□ 2.3
LSM6-203ENST00000503982 SOS1Q07889 1333 aaPredicted RBP29.41■■■□□ 2.3
LSM6-203ENST00000503982 C10orf71Q711Q0 1435 aa29.4■■■□□ 2.3
LSM6-203ENST00000503982 A0A0G2JLW4 131 aa29.4■■■□□ 2.3
LSM6-203ENST00000503982 CANXP27824 592 aaKnown RBP29.4■■■□□ 2.3
LSM6-203ENST00000503982 TGFB2P61812 414 aa29.4■■■□□ 2.3
LSM6-203ENST00000503982 COL15A1P39059 1388 aa29.39■■■□□ 2.3
LSM6-203ENST00000503982 STARD3NLO95772 234 aa29.39■■■□□ 2.3
LSM6-203ENST00000503982 PXDNLA1KZ92 1463 aa29.39■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms