RNA–Protein interactions for RNA: ENST00000503274.1

NIPBL-203, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 5

Gene NIPBL, Length 789 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-203ENST00000503274 SENP2Q9HC62 589 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 POLMQ9NP87 494 aaPredicted RBP11.22□□□□□ -0.61
NIPBL-203ENST00000503274 RBM19Q9Y4C8 960 aaKnown RBP11.22□□□□□ -0.61
NIPBL-203ENST00000503274 ATG7O95352 703 aa11.2□□□□□ -0.62
NIPBL-203ENST00000503274 CTSOP43234 321 aaPredicted RBP11.2□□□□□ -0.62
NIPBL-203ENST00000503274 TREML4Q6UXN2 200 aa11.2□□□□□ -0.62
NIPBL-203ENST00000503274 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.2□□□□□ -0.62
NIPBL-203ENST00000503274 KIFC2Q96AC6 838 aa11.2□□□□□ -0.62
NIPBL-203ENST00000503274 SOS2Q07890 1332 aaPredicted RBP11.19□□□□□ -0.62
NIPBL-203ENST00000503274 TTLL8A6PVC2 850 aa11.19□□□□□ -0.62
NIPBL-203ENST00000503274 BACH1O14867 736 aa11.19□□□□□ -0.62
NIPBL-203ENST00000503274 DKK1O94907 266 aa11.19□□□□□ -0.62
NIPBL-203ENST00000503274 SNRPBP14678 240 aaKnown RBP11.19□□□□□ -0.62
NIPBL-203ENST00000503274 GPC1P35052 558 aa11.19□□□□□ -0.62
NIPBL-203ENST00000503274 RNF144AP50876 292 aaPredicted RBP11.19□□□□□ -0.62
NIPBL-203ENST00000503274 ANKMY2Q8IV38 441 aa11.19□□□□□ -0.62
NIPBL-203ENST00000503274 ZNF358Q9NW07 568 aa11.19□□□□□ -0.62
NIPBL-203ENST00000503274 SERTAD1Q9UHV2 236 aa11.19□□□□□ -0.62
NIPBL-203ENST00000503274 HRH3Q9Y5N1 445 aa11.19□□□□□ -0.62
NIPBL-203ENST00000503274 ACIN1Q9UKV3 1341 aaKnown RBP11.18□□□□□ -0.62
NIPBL-203ENST00000503274 CENPCQ03188 943 aa11.18□□□□□ -0.62
NIPBL-203ENST00000503274 DPYDQ12882 1025 aa11.18□□□□□ -0.62
NIPBL-203ENST00000503274 TRIM47Q96LD4 638 aa11.18□□□□□ -0.62
NIPBL-203ENST00000503274 SFI1A8K8P3 1242 aa11.17□□□□□ -0.62
NIPBL-203ENST00000503274 SEC13P55735 322 aa11.17□□□□□ -0.62
NIPBL-203ENST00000503274 ELOAQ14241 798 aaKnown RBP11.17□□□□□ -0.62
NIPBL-203ENST00000503274 FOXD4L5Q5VV16 416 aaPredicted RBP11.17□□□□□ -0.62
NIPBL-203ENST00000503274 SLC4A9Q96Q91 983 aa11.17□□□□□ -0.62
NIPBL-203ENST00000503274 NOVA2Q9UNW9 492 aaKnown RBP11.17□□□□□ -0.62
NIPBL-203ENST00000503274 SMTNP53814 917 aa11.16□□□□□ -0.62
NIPBL-203ENST00000503274 RNF217Q8TC41 542 aa11.16□□□□□ -0.62
NIPBL-203ENST00000503274 FAM200AQ8TCP9 573 aa11.16□□□□□ -0.62
NIPBL-203ENST00000503274 ARXQ96QS3 562 aa11.16□□□□□ -0.62
NIPBL-203ENST00000503274 FIGNL2A6NMB9 653 aa11.15□□□□□ -0.62
NIPBL-203ENST00000503274 M0R2N6 131 aa11.15□□□□□ -0.62
NIPBL-203ENST00000503274 TLR1Q15399 786 aa11.15□□□□□ -0.62
NIPBL-203ENST00000503274 SLC27A3Q5K4L6 730 aa11.15□□□□□ -0.62
NIPBL-203ENST00000503274 GRIP2Q9C0E4 1043 aa11.15□□□□□ -0.62
NIPBL-203ENST00000503274 MAN1A2O60476 641 aa11.14□□□□□ -0.63
NIPBL-203ENST00000503274 FHDC1Q9C0D6 1143 aaPredicted RBP11.14□□□□□ -0.63
NIPBL-203ENST00000503274 ZMIZ1Q9ULJ6 1067 aa11.14□□□□□ -0.63
NIPBL-203ENST00000503274 A6NJY4 79 aa11.13□□□□□ -0.63
NIPBL-203ENST00000503274 LYSMD3Q7Z3D4 306 aa11.13□□□□□ -0.63
NIPBL-203ENST00000503274 ZSCAN10Q96SZ4 725 aaPredicted RBP11.13□□□□□ -0.63
NIPBL-203ENST00000503274 DNMT3LQ9UJW3 386 aa11.13□□□□□ -0.63
NIPBL-203ENST00000503274 MTFR1Q15390 333 aa11.12□□□□□ -0.63
NIPBL-203ENST00000503274 LCE2AQ5TA79 106 aaPredicted RBP11.12□□□□□ -0.63
NIPBL-203ENST00000503274 TSEN2Q8NCE0 465 aaKnown RBP11.12□□□□□ -0.63
NIPBL-203ENST00000503274 GTF2E1P29083 439 aaPredicted RBP11.11□□□□□ -0.63
NIPBL-203ENST00000503274 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.11□□□□□ -0.63
NIPBL-203ENST00000503274 PRICKLE2Q7Z3G6 844 aa11.11□□□□□ -0.63
NIPBL-203ENST00000503274 TNS4Q8IZW8 715 aa11.11□□□□□ -0.63
NIPBL-203ENST00000503274 STK32AQ8WU08 396 aa11.11□□□□□ -0.63
NIPBL-203ENST00000503274 SOBPA7XYQ1 873 aa11.1□□□□□ -0.63
NIPBL-203ENST00000503274 WFS1O76024 890 aa11.1□□□□□ -0.63
NIPBL-203ENST00000503274 TMEM214Q6NUQ4 689 aaKnown RBP11.1□□□□□ -0.63
NIPBL-203ENST00000503274 HINFPQ9BQA5 517 aa11.1□□□□□ -0.63
NIPBL-203ENST00000503274 SPATA31C2B4DYI2 1134 aa11.09□□□□□ -0.63
NIPBL-203ENST00000503274 CDK2AP1O14519 115 aa11.09□□□□□ -0.63
NIPBL-203ENST00000503274 EPHA4P54764 986 aa11.09□□□□□ -0.63
NIPBL-203ENST00000503274 TMEM164Q5U3C3 297 aa11.09□□□□□ -0.63
NIPBL-203ENST00000503274 PPARGC1BQ86YN6 1023 aaKnown RBP11.09□□□□□ -0.63
NIPBL-203ENST00000503274 SCHIP1Q9P0W5 487 aaPredicted RBP11.09□□□□□ -0.63
NIPBL-203ENST00000503274 CSB-PGBD3P0DP91 1061 aa11.08□□□□□ -0.64
NIPBL-203ENST00000503274 POU4F2Q12837 409 aa11.08□□□□□ -0.64
NIPBL-203ENST00000503274 GNASQ5JWF2 1037 aa11.08□□□□□ -0.64
NIPBL-203ENST00000503274 FOXK2Q01167 660 aa11.07□□□□□ -0.64
NIPBL-203ENST00000503274 NFX1Q12986 1120 aaKnown RBP11.07□□□□□ -0.64
NIPBL-203ENST00000503274 NBPF15Q8N660 670 aa11.07□□□□□ -0.64
NIPBL-203ENST00000503274 RHBDD1Q8TEB9 315 aa11.07□□□□□ -0.64
NIPBL-203ENST00000503274 IQSEC3Q9UPP2 1182 aaPredicted RBP11.07□□□□□ -0.64
NIPBL-203ENST00000503274 SWI5Q1ZZU3 235 aa11.06□□□□□ -0.64
NIPBL-203ENST00000503274 TAS1R3Q7RTX0 852 aa11.06□□□□□ -0.64
NIPBL-203ENST00000503274 RHOQP17081 205 aa11.05□□□□□ -0.64
NIPBL-203ENST00000503274 FAM69CQ0P6D2 419 aa11.05□□□□□ -0.64
NIPBL-203ENST00000503274 WDR44Q5JSH3 913 aa11.05□□□□□ -0.64
NIPBL-203ENST00000503274 NBPF10Q6P3W6 841 aaKnown RBP11.05□□□□□ -0.64
NIPBL-203ENST00000503274 SLC9A9Q8IVB4 645 aa11.05□□□□□ -0.64
NIPBL-203ENST00000503274 NIFKQ9BYG3 293 aaKnown RBP11.05□□□□□ -0.64
NIPBL-203ENST00000503274 TSPAN10Q9H1Z9 355 aaPredicted RBP11.05□□□□□ -0.64
NIPBL-203ENST00000503274 USP3Q9Y6I4 520 aa11.05□□□□□ -0.64
NIPBL-203ENST00000503274 LGR5O75473 907 aa11.04□□□□□ -0.64
NIPBL-203ENST00000503274 C4orf17Q53FE4 359 aa11.04□□□□□ -0.64
NIPBL-203ENST00000503274 LCE2CQ5TA81 110 aa11.04□□□□□ -0.64
NIPBL-203ENST00000503274 TBCELQ5QJ74 424 aa11.03□□□□□ -0.64
NIPBL-203ENST00000503274 CABP1Q9NZU7 370 aa11.03□□□□□ -0.64
NIPBL-203ENST00000503274 PHKA2P46019 1235 aa11.02□□□□□ -0.65
NIPBL-203ENST00000503274 PTSQ03393 145 aa11.02□□□□□ -0.65
NIPBL-203ENST00000503274 ZNF295-AS1Q8N0V1 137 aa11.02□□□□□ -0.65
NIPBL-203ENST00000503274 GAS2L2Q8NHY3 880 aa11.02□□□□□ -0.65
NIPBL-203ENST00000503274 SCG3Q8WXD2 468 aaKnown RBP11.02□□□□□ -0.65
NIPBL-203ENST00000503274 ATAD2Q6PL18 1390 aa11.02□□□□□ -0.65
NIPBL-203ENST00000503274 TMEM88BA6NKF7 163 aa11.01□□□□□ -0.65
NIPBL-203ENST00000503274 PSMA6P60900 246 aaKnown RBP11.01□□□□□ -0.65
NIPBL-203ENST00000503274 RETREG2Q8NC44 543 aa11.01□□□□□ -0.65
NIPBL-203ENST00000503274 CLP1Q92989 425 aaKnown RBP11.01□□□□□ -0.65
NIPBL-203ENST00000503274 TIMMDC1Q9NPL8 285 aa11.01□□□□□ -0.65
NIPBL-203ENST00000503274 TERTO14746 1132 aaKnown RBP11□□□□□ -0.65
NIPBL-203ENST00000503274 C21orf2O43822 256 aa11□□□□□ -0.65
NIPBL-203ENST00000503274 PPP1R12BO60237 982 aaPredicted RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms