RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 MMP10P09238 476 aa13.21□□□□□ -0.29
UBR4-216ENST00000494503 ATG3Q9NT62 314 aa13.21□□□□□ -0.29
UBR4-216ENST00000494503 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.21□□□□□ -0.296e-10■□□□□ 8.9
UBR4-216ENST00000494503 EIF4G2P78344 907 aaKnown RBP eCLIP13.2□□□□□ -0.3
UBR4-216ENST00000494503 ZNF530Q6P9A1 599 aaPredicted RBP13.2□□□□□ -0.3
UBR4-216ENST00000494503 TIMELESSQ9UNS1 1208 aa13.2□□□□□ -0.3
UBR4-216ENST00000494503 RTCBQ9Y3I0 505 aaKnown RBP13.2□□□□□ -0.3
UBR4-216ENST00000494503 HSP90AB1P08238 724 aaKnown RBP13.19□□□□□ -0.3
UBR4-216ENST00000494503 CABP4P57796 275 aa13.19□□□□□ -0.3
UBR4-216ENST00000494503 PLEKHO1Q53GL0 409 aaPredicted RBP13.19□□□□□ -0.3
UBR4-216ENST00000494503 C1orf141Q5JVX7 400 aa13.19□□□□□ -0.3
UBR4-216ENST00000494503 TRAPPC3LQ5T215 181 aa13.19□□□□□ -0.3
UBR4-216ENST00000494503 MORC1Q86VD1 984 aa13.19□□□□□ -0.3
UBR4-216ENST00000494503 PANK3Q9H999 370 aa13.19□□□□□ -0.3
UBR4-216ENST00000494503 N4BP2Q86UW6 1770 aaPredicted RBP13.19□□□□□ -0.3
UBR4-216ENST00000494503 CICQ96RK0 1608 aaPredicted RBP13.18□□□□□ -0.3
UBR4-216ENST00000494503 HSPA5P11021 654 aaKnown RBP13.18□□□□□ -0.3
UBR4-216ENST00000494503 RFC4P35249 363 aa13.18□□□□□ -0.3
UBR4-216ENST00000494503 PTCD1O75127 700 aaKnown RBP13.17□□□□□ -0.3
UBR4-216ENST00000494503 MTHFSP49914 203 aa13.17□□□□□ -0.3
UBR4-216ENST00000494503 DCAF5Q96JK2 942 aa13.17□□□□□ -0.3
UBR4-216ENST00000494503 BCS1LQ9Y276 419 aa13.17□□□□□ -0.3
UBR4-216ENST00000494503 ERVV-2B6SEH9 535 aa13.16□□□□□ -0.3
UBR4-216ENST00000494503 CCER1Q8TC90 406 aaPredicted RBP13.16□□□□□ -0.3
UBR4-216ENST00000494503 AMOTQ4VCS5 1084 aa13.15□□□□□ -0.3
UBR4-216ENST00000494503 AEBP1Q8IUX7 1158 aa13.15□□□□□ -0.3
UBR4-216ENST00000494503 NLGN1Q8N2Q7 840 aa13.15□□□□□ -0.3
UBR4-216ENST00000494503 CCDC87Q9NVE4 849 aa13.15□□□□□ -0.3
UBR4-216ENST00000494503 KNSTRNQ9Y448 316 aa13.15□□□□□ -0.3
UBR4-216ENST00000494503 PARP3Q9Y6F1 533 aa13.15□□□□□ -0.3
UBR4-216ENST00000494503 COL5A3P25940 1745 aaPredicted RBP13.15□□□□□ -0.3
UBR4-216ENST00000494503 KDRP35968 1356 aa13.15□□□□□ -0.3
UBR4-216ENST00000494503 CEP350Q5VT06 3117 aa13.15□□□□□ -0.31
UBR4-216ENST00000494503 CLSPNQ9HAW4 1339 aa13.14□□□□□ -0.31
UBR4-216ENST00000494503 A0A0G2JLW4 131 aa13.14□□□□□ -0.31
UBR4-216ENST00000494503 SULT6B1Q6IMI4 303 aa13.14□□□□□ -0.31
UBR4-216ENST00000494503 ARHGEF1Q92888 912 aaKnown RBP13.14□□□□□ -0.31
UBR4-216ENST00000494503 KDM6AO15550 1401 aaPredicted RBP13.13□□□□□ -0.31
UBR4-216ENST00000494503 C4AP0C0L4 1744 aa13.13□□□□□ -0.31
UBR4-216ENST00000494503 PXDNLA1KZ92 1463 aa13.13□□□□□ -0.31
UBR4-216ENST00000494503 ADCY9O60503 1353 aa13.13□□□□□ -0.31
UBR4-216ENST00000494503 FCHSD2O94868 740 aa13.13□□□□□ -0.31
UBR4-216ENST00000494503 CNGB1Q14028 1251 aaPredicted RBP13.13□□□□□ -0.31
UBR4-216ENST00000494503 ARHGAP27Q6ZUM4 889 aa13.13□□□□□ -0.31
UBR4-216ENST00000494503 SLC4A9Q96Q91 983 aa13.13□□□□□ -0.31
UBR4-216ENST00000494503 KIF13BQ9NQT8 1826 aa13.13□□□□□ -0.31
UBR4-216ENST00000494503 CNTNAP4Q9C0A0 1308 aa13.13□□□□□ -0.31
UBR4-216ENST00000494503 MYH14Q7Z406 1995 aaKnown RBP13.12□□□□□ -0.31
UBR4-216ENST00000494503 ADRA2BP18089 450 aa13.12□□□□□ -0.31
UBR4-216ENST00000494503 NFATC2IPQ8NCF5 419 aa13.12□□□□□ -0.31
UBR4-216ENST00000494503 PLEKHG2Q9H7P9 1386 aa13.11□□□□□ -0.31
UBR4-216ENST00000494503 RPS6KA4O75676 772 aa13.11□□□□□ -0.31
UBR4-216ENST00000494503 GYS1P13807 737 aa13.11□□□□□ -0.31
UBR4-216ENST00000494503 DPEP1P16444 411 aa13.11□□□□□ -0.31
UBR4-216ENST00000494503 CRKLP46109 303 aaKnown RBP13.11□□□□□ -0.31
UBR4-216ENST00000494503 TGFB2P61812 414 aa13.11□□□□□ -0.31
UBR4-216ENST00000494503 ZNF831Q5JPB2 1677 aa13.11□□□□□ -0.31
UBR4-216ENST00000494503 HSPA6P17066 643 aa13.1□□□□□ -0.31
UBR4-216ENST00000494503 RC3H1Q5TC82 1133 aaKnown RBP13.1□□□□□ -0.31
UBR4-216ENST00000494503 SRP68Q9UHB9 627 aaKnown RBP13.1□□□□□ -0.31
UBR4-216ENST00000494503 VIRMAQ69YN4 1812 aaKnown RBP13.1□□□□□ -0.31
UBR4-216ENST00000494503 C10orf71Q711Q0 1435 aa13.1□□□□□ -0.31
UBR4-216ENST00000494503 KIAA1551Q9HCM1 1747 aa13.1□□□□□ -0.31
UBR4-216ENST00000494503 SCN11AQ9UI33 1791 aa13.09□□□□□ -0.31
UBR4-216ENST00000494503 HMOX1P09601 288 aa13.09□□□□□ -0.31
UBR4-216ENST00000494503 TJP1Q07157 1748 aa13.08□□□□□ -0.32
UBR4-216ENST00000494503 ZPR1O75312 459 aa13.08□□□□□ -0.32
UBR4-216ENST00000494503 FKBP8Q14318 412 aa13.07□□□□□ -0.32
UBR4-216ENST00000494503 C16orf71Q8IYS4 520 aaPredicted RBP13.07□□□□□ -0.32
UBR4-216ENST00000494503 BRCA1P38398 1863 aaKnown RBP13.07□□□□□ -0.32
UBR4-216ENST00000494503 KIF3CO14782 793 aa13.06□□□□□ -0.32
UBR4-216ENST00000494503 IL13P35225 146 aa13.06□□□□□ -0.32
UBR4-216ENST00000494503 AKAP4Q5JQC9 854 aa13.06□□□□□ -0.32
UBR4-216ENST00000494503 CC2D1BQ5T0F9 858 aaKnown RBP13.06□□□□□ -0.32
UBR4-216ENST00000494503 DNAJC10Q8IXB1 793 aa13.06□□□□□ -0.32
UBR4-216ENST00000494503 PIM2Q9P1W9 311 aa13.06□□□□□ -0.32
UBR4-216ENST00000494503 USP42Q9H9J4 1324 aaKnown RBP13.06□□□□□ -0.32
UBR4-216ENST00000494503 ARFGEF1Q9Y6D6 1849 aa13.06□□□□□ -0.32
UBR4-216ENST00000494503 CHRNA5P30532 468 aa13.05□□□□□ -0.32
UBR4-216ENST00000494503 SLC39A6Q13433 755 aa13.05□□□□□ -0.32
UBR4-216ENST00000494503 DALRD3Q5D0E6 543 aaKnown RBP13.05□□□□□ -0.32
UBR4-216ENST00000494503 C9orf131Q5VYM1 1079 aa13.05□□□□□ -0.32
UBR4-216ENST00000494503 SLC52A2Q9HAB3 445 aa13.05□□□□□ -0.32
UBR4-216ENST00000494503 DDR1Q08345 913 aa13.04□□□□□ -0.32
UBR4-216ENST00000494503 USPL1Q5W0Q7 1092 aa13.04□□□□□ -0.32
UBR4-216ENST00000494503 LGR6Q9HBX8 967 aa13.04□□□□□ -0.32
UBR4-216ENST00000494503 NMRK2Q9NPI5 230 aa13.04□□□□□ -0.32
UBR4-216ENST00000494503 RNF181Q9P0P0 153 aa13.04□□□□□ -0.32
UBR4-216ENST00000494503 ZNF330Q9Y3S2 320 aaPredicted RBP13.04□□□□□ -0.32
UBR4-216ENST00000494503 U2SURPO15042 1029 aaKnown RBP13.02□□□□□ -0.33
UBR4-216ENST00000494503 RNMTO43148 476 aaKnown RBP13.02□□□□□ -0.33
UBR4-216ENST00000494503 DIAPH1O60610 1272 aaKnown RBP13.02□□□□□ -0.33
UBR4-216ENST00000494503 TOMM70O94826 608 aa13.02□□□□□ -0.33
UBR4-216ENST00000494503 APLP1P51693 650 aa13.02□□□□□ -0.33
UBR4-216ENST00000494503 IFFO2Q5TF58 517 aa13.02□□□□□ -0.33
UBR4-216ENST00000494503 INTS5Q6P9B9 1019 aaKnown RBP13.02□□□□□ -0.33
UBR4-216ENST00000494503 TTC5Q8N0Z6 440 aa13.02□□□□□ -0.33
UBR4-216ENST00000494503 KIF7Q2M1P5 1343 aa13.02□□□□□ -0.33
UBR4-216ENST00000494503 POLRMTO00411 1230 aaKnown RBP13.01□□□□□ -0.33
UBR4-216ENST00000494503 KCNA3P22001 575 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms